Talt005197.1
Basic Information
- Insect
- Tortricodes alternella
- Gene Symbol
- -
- Assembly
- GCA_947859335.1
- Location
- OX401971.1:30181166-30220281[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.72 46 5.1 0.1 1 23 247 270 247 270 0.92 2 14 0.98 62 4.6 0.4 2 23 279 300 279 300 0.95 3 14 3.7 2.4e+02 2.8 0.1 1 23 304 326 304 326 0.93 4 14 0.0045 0.29 12.0 0.2 2 19 332 349 332 352 0.93 5 14 0.018 1.1 10.1 1.9 3 21 360 378 359 379 0.90 6 14 0.00013 0.0085 16.8 1.4 2 23 395 416 394 416 0.95 7 14 0.00015 0.0094 16.7 0.3 1 23 421 443 421 443 0.98 8 14 0.00011 0.007 17.1 5.1 1 21 452 472 452 477 0.94 9 14 0.00011 0.007 17.1 5.1 1 21 491 511 491 516 0.94 10 14 0.00011 0.007 17.1 5.1 1 21 530 550 530 555 0.94 11 14 0.00057 0.036 14.8 1.7 1 23 563 586 563 586 0.92 12 14 0.0024 0.15 12.9 0.3 1 23 592 615 592 615 0.96 13 14 0.019 1.2 10.0 0.4 3 19 629 645 627 646 0.89 14 14 0.0066 0.42 11.5 1.2 1 23 659 682 659 682 0.98
Sequence Information
- Coding Sequence
- ATGAAGGAAGTAAATATTAATATTGAAGGTTACAATGTGAATGGTATATGCGTCGGTTGCTTAAACTATGGTCGCAAAATGTTCTACAGTGAAAAAGTTAAGGAATGTTTTAAATTACTCGGAAATATTGATGTGCCCGATGGGTTGGCAGTACAAGTATGCTGGGAGTGCCTGGCTGCTGTCAAAAGGGTCGACAGGTTCCGGAAGCTTATTCTCAATTCCTATGACATCCTCATTGATTACTCGAGACAGCACACATTCCTCAATGCCCCATCGGACCTGTCTGTTCATGCGACGCAGCGTCTCAGGGCCACCCAGACAGAGGTCCACGGAGACGCGCCCAAGCTTCAAGTTGAAGTTGACGTAAGCGTTGTTAAAGAGGAGACGAAAGAGGAGCTTCAGTTTCCTGAATCGGAACCAATCAAATCCGAGTCAGAATTCTTCGACAATGCCGATTTCTCTCAGGAACAGGACTTGACTTCTGAAGATGACATCCAGCTTTCCAAACTAAAGAAAAAGAAGAAGAAAGAGAAACGCACTAAAAAGAGCAAGAAGAAGAGAAAAGAGTATAAGGAACAGATGATAAAGGAGACAAAACCCGAGATATCCCTCCAACGTTCCACCAGAAAGCTGAAGAACCTCCCAGCGGACCTGGTGGAGCTGTACACCATGACAGAAGAGGAAATGTGGGAGATAAGGGCGGAGGACGTGGAGAGCAAAGAGTTCTCCGTGCTGAAGTACCGCTGCGATGACTGCATCATCGGGTTCAGCTCGGAGAGGCTCATGAGCGACCACGTGCAGGGGAAACACAAGCCGAAAGGGCCGGATTGTCCCCAGTGCGACGTGTGCAAAGCGTACTTCCTCACCAAAGACAACGTGTCTAACCATAGAGCGCTGCACCTGAGCGCGTTCCGCTGCGTGCGCTGCGGCGCGCGCACCGCGCTCAAGCGCCGCATGCTCGCGCACGCGCGCGCGCACTCCGGCGCCGCCGAGCAGTGCGCCACGTGCGGGGAGGAGTTCAGTTCTAAATCAAAGCTGTCGTATCACAAAGGTGTTTGCAACCAAGCGCGCCCCCACTGCGACTGTTGCGGGAAGGTGTTCGCCAATAAAATGACGCTCAAGTACCATCTCAAAATTCTCCCTCAGAACAAGGAAGACAAGCCGAAGGAGAAGCTATACATCAAGTGTAAGGGTTGCGACAAAGTATTCCACTCTAAAAAGAGCTACCGagcgcatgtTGTAATACACGACGGTCTCACGTATCCGTGCCCAATTTGCGGAAAACTGTTTCAATGGAAGCGGAATCTAGCCAGACATACAAGAAATCACAGAGACCGCGACGCGGGCGCCACGCACGAGTGTCGCGACTGCGGCAAGAGCTTCAGCAGCCGCGACTGCTACAACAACCACATGAAGCTGAGCAAGCGGCACGTGCACGAGGACGCCTACGTCCGCCCACTGCTGGGCCCGCACGAGTGTCGCGACTGCGGCAAGAGCTTCAGCAGCCGCGACTGCTACAACAATCACATGAAGCTGAGCAAGCGGCACGTGCACGAGGACGCCTACGTCCGCCCACTGCTGGGCCCGCACGAGTGTCGCGACTGCGGCAAGAGCTTCAGCAGCCGCGACTGCTACAACAACCACATGAAGCTGAGCAAGCGGCACGTGCACGAGGACGCCTACGTCCACGAGTGTTCGTACTGCGGTAAGAAATTTGCAACTAAATGGTGTATGGTGGACCACATAGACTGGGACCACCTAAAGAGGATCAAGTATCAGTGCAGCGTTTGTTTTAAGGCTTTCAAAACGGCTAAAATAATGGTGGCCCACATGAACAACATACACGAGGGGAAGAAAAACAGGGAGCCGGAGGGCGAGCACCTGTGCGAGATATGCGGCAAGTCTTACAAGACGGTGAAGCGGCTGAAGGGCCACGTGTGGGCGATGCACACCAACCGCTCCAGCACCAAGAGCTTCAAGTGCAAGCTGTGCCCGGCCACCTTCACCTGGCAGACCTCCATCTACAAGCACATGAAGATGATGCACGACAACAAACGGCCCAAACTTCGCCCGCTGGCCAAGAAGCAGGAGCCGTACTCGACCTTGAGCGCCAGGCCCGCGCCCTACTTCCCGCCGAACATCAACTTACACGGTCTCACGCATGCGCAAGGACTTGTGCATAATATAGTTTGA
- Protein Sequence
- MKEVNINIEGYNVNGICVGCLNYGRKMFYSEKVKECFKLLGNIDVPDGLAVQVCWECLAAVKRVDRFRKLILNSYDILIDYSRQHTFLNAPSDLSVHATQRLRATQTEVHGDAPKLQVEVDVSVVKEETKEELQFPESEPIKSESEFFDNADFSQEQDLTSEDDIQLSKLKKKKKKEKRTKKSKKKRKEYKEQMIKETKPEISLQRSTRKLKNLPADLVELYTMTEEEMWEIRAEDVESKEFSVLKYRCDDCIIGFSSERLMSDHVQGKHKPKGPDCPQCDVCKAYFLTKDNVSNHRALHLSAFRCVRCGARTALKRRMLAHARAHSGAAEQCATCGEEFSSKSKLSYHKGVCNQARPHCDCCGKVFANKMTLKYHLKILPQNKEDKPKEKLYIKCKGCDKVFHSKKSYRAHVVIHDGLTYPCPICGKLFQWKRNLARHTRNHRDRDAGATHECRDCGKSFSSRDCYNNHMKLSKRHVHEDAYVRPLLGPHECRDCGKSFSSRDCYNNHMKLSKRHVHEDAYVRPLLGPHECRDCGKSFSSRDCYNNHMKLSKRHVHEDAYVHECSYCGKKFATKWCMVDHIDWDHLKRIKYQCSVCFKAFKTAKIMVAHMNNIHEGKKNREPEGEHLCEICGKSYKTVKRLKGHVWAMHTNRSSTKSFKCKLCPATFTWQTSIYKHMKMMHDNKRPKLRPLAKKQEPYSTLSARPAPYFPPNINLHGLTHAQGLVHNIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -