Talt004727.1
Basic Information
- Insect
- Tortricodes alternella
- Gene Symbol
- -
- Assembly
- GCA_947859335.1
- Location
- OX401971.1:23547764-23560617[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 9.3e-05 0.0059 17.3 0.3 1 23 252 274 252 274 0.98 2 12 0.38 24 5.9 1.3 1 23 281 303 281 303 0.93 3 12 0.096 6.1 7.8 0.7 2 23 308 329 307 329 0.93 4 12 0.00021 0.013 16.2 3.8 1 23 334 357 334 357 0.96 5 12 0.029 1.9 9.4 0.1 3 23 364 385 363 385 0.94 6 12 0.058 3.7 8.5 0.1 2 20 396 414 395 416 0.93 7 12 3.3 2.1e+02 3.0 0.0 3 20 428 445 427 447 0.89 8 12 0.00012 0.0075 17.0 2.5 1 23 454 477 454 477 0.97 9 12 0.00018 0.012 16.4 0.3 3 23 507 527 506 527 0.97 10 12 3.8e-06 0.00025 21.6 0.3 1 23 533 555 533 555 0.98 11 12 5.8e-06 0.00037 21.1 0.2 1 23 561 583 561 583 0.98 12 12 0.00067 0.043 14.6 2.1 1 23 589 612 589 612 0.96
Sequence Information
- Coding Sequence
- ATGAAGACAGTTAATAAAGAACACTTAAAACAGTCTCCAAAGTTGTTATGCTGCCGTGCGTGTCTTGCTACTGATGTTAAATTGTTTAATATTCACGAAAATCGACTGGCAGAAGCTTTTTCACACGTTACGGGGACGCCTGTGGTGGAAGTAGATGGACTGCCCCGGCACCTGTGTGCTTTCTGCTGTGTCGCATTGAACAAATGCATCGAGTTCCGGGCCAAGAGTCTCCGCGCACACCATTGCTTGACCACAGGAAAGCTACGGCATGAGTTAACCACAGACTACATCCGCACCATAGACCGCCTCTCCCACCAACTTCTCCTCAACCTGTCATTAAAAAAACTCGACGGCACAGACTATAATGAACTTCAAGTCGAGGAAATTAAGAAAGAAGAAGACATAGCCAACATATTCTTAGATACAGACAATTTAAAAATCAAATATGAAATCAAGGACAAGATAGATGAAATAGAAGATTTCGATGATGATAATTCTGAACACATATTTGTTGCGACAAATCCTGTATCCGAAGTGAAGAAGGAAAGAAGAGTCAAAAAGAGGAAGTGTGAGACGGAGGAAAGGCATACGAGAAAAATCAAGAAGAGGCTCTCTAATAATGACTATTTGCCGGATTTTGATTTTGCCATGTTTGAGAGCAGTTATAGCGTGGATATTATCGCTTTGACAAAGGAAGAGCAATTGGCGGAAATACAGGCGCGCAAAGTGTCTGATAACTATCAGTATGCAGCCTTTAAGTGTGAGGAGTGCGGGAAGGGATACAGAGCTGAAGAGGCGTATAATAACCACATGACGAGACATAGCCCGAGTGTTGGTCCCCACGCTTGCGAGATATGCTTGGTTCGGTTCAAGCGTCTCTCGCGCCGCCAGGAGCACCAGGACCTGCACCGGCTGAAGCTGGTCTGCAGGCAGTGCGGCTTCGTCTCGCGGAACCGATATCAAGCGAAGAAACATTTTGAATGGCACACGGGCAAAATACACGTGTGCAAACACTGCGGGGCCAGTTTTACCAAGAGCTCGACGTATCTATCGCACGTCCGGCTGCAACACCCCGCGATGAACGTGGCGTGCGACGTCTGCGGGGAGACCTTCGTGGGGCGGCTCGGGCTCCTGCAGCACAAGTCCAGGGCGCACCAGAAGGTCGCGTCAATAAAACCCGAGTCGAAGTGTTTGTCGTGCGGCGTCCAATTCGAGAGCGCCGACGCTCTCAGCAGGCACACGGACTCAAGTGCGGGCGGGTGCGATCCTGATATGAGGTCTTGTTTAATATGCGGTGAGTCGTTGCTGACAGAAGAATCCTTGCAGAGCCACGCTCAGGAGTGCCGAAGTTCGGAGCAGTTCAAATGTCTTGAGTGCAACAAAACCTTCGCCTCCTCGTCCTCATACGACGTGCACCACCAGCGCGTCCACTTGAACGTCCGCTGGAGGAAGTCGCGGGATAAGCGCGCCAAGCGCCGCCCGCCCAGGGACGAGCCGCCCAAGCGACGTGAGGCCATGTGCGAGGTCTGCGGGAAGGCTTGCGAGTCGAACGCGGCGCTGGTGTATCACCAACGGAGCCATACCGGGGAGCGCCCGTACAAATGCTCGCAGTGCCCGAAGTCCTTCACGATGCCGCAAGCGCTGATTACGCACCAGCTCGTCCACTCCGACGAGCGCCCGTACATGTGCTCGGTGTGTCCCAAGGCCTTCAAACAGAAGGTCGCCCTTCAACTGCACAGTCGAGTCCACACAGGCGAGCGTCCGTACAAATGCTCAATGTGCGATAGTTCGTTCAAGCAGGGTCCACACTTGCGTACGCACGTCAAGTTGATGCATAACGTACCTTGCGACAAGCAACGCCGCGGGGCGAAGCGGAAGATCTTGTAA
- Protein Sequence
- MKTVNKEHLKQSPKLLCCRACLATDVKLFNIHENRLAEAFSHVTGTPVVEVDGLPRHLCAFCCVALNKCIEFRAKSLRAHHCLTTGKLRHELTTDYIRTIDRLSHQLLLNLSLKKLDGTDYNELQVEEIKKEEDIANIFLDTDNLKIKYEIKDKIDEIEDFDDDNSEHIFVATNPVSEVKKERRVKKRKCETEERHTRKIKKRLSNNDYLPDFDFAMFESSYSVDIIALTKEEQLAEIQARKVSDNYQYAAFKCEECGKGYRAEEAYNNHMTRHSPSVGPHACEICLVRFKRLSRRQEHQDLHRLKLVCRQCGFVSRNRYQAKKHFEWHTGKIHVCKHCGASFTKSSTYLSHVRLQHPAMNVACDVCGETFVGRLGLLQHKSRAHQKVASIKPESKCLSCGVQFESADALSRHTDSSAGGCDPDMRSCLICGESLLTEESLQSHAQECRSSEQFKCLECNKTFASSSSYDVHHQRVHLNVRWRKSRDKRAKRRPPRDEPPKRREAMCEVCGKACESNAALVYHQRSHTGERPYKCSQCPKSFTMPQALITHQLVHSDERPYMCSVCPKAFKQKVALQLHSRVHTGERPYKCSMCDSSFKQGPHLRTHVKLMHNVPCDKQRRGAKRKIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00009347;
- 90% Identity
- -
- 80% Identity
- -