Basic Information

Insect: Tortricodes alternella
Gene Symbol: -
Assembly: GCA_947859335.1
Location: OX401968.1:2307186-2345576[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.17 11 7.1 0.1 2 23 493 514 492 514 0.89

2 16 0.041 2.6 9.0 3.8 2 23 685 706 684 706 0.95

3 16 9.2e-05 0.0059 17.3 0.5 2 23 750 773 749 773 0.97

4 16 0.042 2.7 8.9 0.2 1 23 779 801 779 801 0.93

5 16 0.0025 0.16 12.8 3.3 1 23 807 829 807 829 0.98

6 16 0.19 12 6.9 0.1 1 23 938 960 938 960 0.96

7 16 2.4 1.5e+02 3.4 7.2 1 23 967 989 967 989 0.95

8 16 0.0016 0.1 13.4 1.8 1 23 1029 1052 1029 1052 0.95

9 16 0.00037 0.024 15.4 0.7 1 23 1059 1082 1059 1082 0.98

10 16 0.016 1 10.3 0.2 2 23 1104 1126 1103 1126 0.96

11 16 0.00036 0.023 15.4 1.8 1 23 1143 1165 1143 1165 0.97

12 16 0.004 0.25 12.2 4.3 3 23 1171 1192 1170 1192 0.95

13 16 1.3e-06 8.1e-05 23.2 1.8 1 23 1198 1220 1198 1220 0.98

14 16 0.0064 0.41 11.5 0.9 1 23 1226 1248 1226 1248 0.96

15 16 0.00014 0.009 16.7 0.1 1 23 1254 1276 1254 1276 0.97

16 16 7.3e-05 0.0047 17.6 0.7 2 23 1283 1305 1282 1305 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.17	11	7.1	0.1	2	23	493	514	492	514	0.89
2	16	0.041	2.6	9.0	3.8	2	23	685	706	684	706	0.95
3	16	9.2e-05	0.0059	17.3	0.5	2	23	750	773	749	773	0.97
4	16	0.042	2.7	8.9	0.2	1	23	779	801	779	801	0.93
5	16	0.0025	0.16	12.8	3.3	1	23	807	829	807	829	0.98
6	16	0.19	12	6.9	0.1	1	23	938	960	938	960	0.96
7	16	2.4	1.5e+02	3.4	7.2	1	23	967	989	967	989	0.95
8	16	0.0016	0.1	13.4	1.8	1	23	1029	1052	1029	1052	0.95
9	16	0.00037	0.024	15.4	0.7	1	23	1059	1082	1059	1082	0.98
10	16	0.016	1	10.3	0.2	2	23	1104	1126	1103	1126	0.96
11	16	0.00036	0.023	15.4	1.8	1	23	1143	1165	1143	1165	0.97
12	16	0.004	0.25	12.2	4.3	3	23	1171	1192	1170	1192	0.95
13	16	1.3e-06	8.1e-05	23.2	1.8	1	23	1198	1220	1198	1220	0.98
14	16	0.0064	0.41	11.5	0.9	1	23	1226	1248	1226	1248	0.96
15	16	0.00014	0.009	16.7	0.1	1	23	1254	1276	1254	1276	0.97
16	16	7.3e-05	0.0047	17.6	0.7	2	23	1283	1305	1282	1305	0.96

Sequence Information

Coding Sequence: ATGACGGAGGAACAGCCTCCGCTGATGGTGTGTATGGAGAACGCTGCTGGTGAAGAGGTGTCCCTTAGCATAGAGCCACATGATGACTTCCAAACATTCCTCGATAAAGCCAACGCATTACTTGGTTATGAAGTAGATCTGAATTCTGTGACGAGATACCAGCCAGTGGCTCTAACCGACAACGCATACCAATTCCTTATGAATGCTGAAAACAATATATTAGAGTATCCACAGCTTGGTTCACAAAGCTTTGATGAAATGTTGGGGTCGAACGACGCCAATGATGATTTAGTTTATGTACTAGATGACGGGACTCAGATAAAGGCTTCGCAAATACATTTCGACAACGAAGATCCACCAGTTGATTTTACAGCTGAAAAAATACCGTTTGTCAAATATGTTGATGATGGTCATGATGATATTGAAGAGCCAGGAGATGTTGATTTGAGGATGATTAATATAATAGAAAGTCCAGTAGCTAGTTGGTCTGGTAAGTCCAGCCCTAAGAAAGGGTTTGTCAACAGTCTCCCTTTTAAACAAGTATGCAATTATACTTCCGGTTTTGAGGCTCAATTTACTCAATATTTAGAAGCTAATGGCGATAAAACTTTTACGTCATTAAACCCTGTTAATGCAAGGAATAAATCTCCTAGAAGCGTGATCAGAGATAATTATAAGAAATATGATGATGTTTATAATAGAAATGATAACTATAAGTTAACTCGGGATGAAGTGTTAAATATGTTTAAAGATCCGCCTATAGGTCTGCCTTACGACAGCAGCCAAGGTTACAGTGAAAAGCGGAGGCATGTACGCAAAACTGATCCGTCGCGACCAGTATATAAGAGCTGGAATTGTAAACCTCTGCCGTACGTAGACGTTGATGGAAATTTGATAGGTCCTAATGAGAGTCAGAATTGTTTTATTTGCGAGAAATTCGTCGAGAACAGCATTGAAAAGCTGTACCTCTTTGATAACGAGGATCAGAGACTCCACAGGTCGTCTCCTCCAAGAAAGTTATCCACCCAACTTAAAATTATCTGTGAGCAATGCTTGAATGAAAACTTTAAGCCGTCACGAATGAAGAGTCCGAATAAAAATCTAAAGTCTGACGAATATCTAGTAATCAGGAACAATCAGCAGTACATATTTCAGAAAACTAATCCTGTTGATTTCAAAAACGCGAGAGGTGGTTTTGTTAATATAGGCGAAGCTTCAGCTATAATTAAGAAAATAGAAACCGGAATGTTGAAAGGGAATCAAGCTAAACAATTCGATTTTTTCAAAGTTGAAATCGGTTCGGATGGCGAAATAATAAAAGACAAAGATGTAATCAAAGATGAGAATCAAAGTGACGTTGAGATCGTTGAGGGACCGGAAATAGATGATGTCATAGACAATTTGGAGGAAGCAGATGAGCAGGTGAAGGAGTTTTTGGGGATGTATGAGCGTGACAGCAATGCTGTCAATGAATTGAAATGCAGATTTTGCGAGCAAGTGTTTGCTGATTTACCACAACTCATGGAACACGGTGACGCACATAAGCATGTCACAGAGGATGGTGAAGTGTTTCCATGTCCTTTGTGTAATTATGAACCCTCTGCTACGACCACGGAGAAGAAGCCTAAGAAAGAACCAGAATCTACTGAGGGCGAAAGCACCTTGGTAATAAAAACAGAAGTGAAACAAGAAGCGTTAGACACGAGCGATGAGGAAGCTATATGGATCGTGCACACCGCCGACGCGGACGCGGCTAGTCAACTGCACACGCTGCTTAAGGTCTACACGTGTATCCGTGTTCTTAGCCCCGGCGCGGCGGTACTAAAAGTCCGTCAAATCATGATGGATGTGTCAACACACAAGTGTAGAAAACGAGGCAGGAAACGGAAATGCACGAACAAGGACACAGTTATTTGTGTGCCCACAAAGGAAGACTTCATAAAGAGAGCACAAGGCAGGCACAGGCAGGATGATTCTGGCGTTAACGACTTGTTTATTACGAAGCCTCGTAAGAAGAAGACCACTGAATTAACCTCGGACCCGCAGATTGTGACGTGCCACAACTGTAATGAGTCGTTTACGTCGAAAGTTCGTCTCAAATTTCACATGCAGTTCCACGATCCGACGTCGTCCATGCTAATTCGAAACGGGCAGTACGCGTGCCGACAGTGCGCAGGAGTGGTGTTCGCTACGGAAACGCAACTGTTTGATCACGTGCATTTCCAACACCTCAAACAACGGCGCTGGCAGTGTCCGGTACAGGACTGCGGAAAGACTTTTTTCCTCAGGGCAACGCTGACAAAACACAGTCGCACGCACACTGACACGCGTCGATATGTGTGCGGCACCTGCGGTAAGAGGTTTCTTGACAAGCAGACCTTGGATGAGCATGGAGTTACACATCTACAGATCAAACCGTTCCAGTGCCACATCTGCCTGAAGCAACTCACGCGCCGGTCCCGTCTGCGCATGCACTTGCGAGCCCACGAAGAGGCGCTATGCCCTGCGCTGGTTCTGGTCTGCGCCGCGTGTCGACGCGCCTTCTGTGACGTGGCAGCCGCGCAGGAACACGCAGTGAAATCCTCGGAGTGCATAGAAGCTTTCGAGAAAGAAGTAAAAGAGGCGGCCGAGGAACCGGCCGCAGTGCTGTCGCCCACTAGTGGGCTGGTGCGGCCCACGCAAAGGAAACCGGAATCCCTGTTAACGGCGCCGATCCCGCGCGAGGCGTACTGCGCCGGAGCGGCCGCGCTGTTGACGCCGCTTGCTCGCGAGCTGCGCGCAACCATACGCGCCGTGCGCATCGAGAAAGCTTTCCGCTGCGAGTATTGCGAAGACGTGTTTTATCTAGAAGAAGCTCTGAACAGTCACCGCGTCATCCACAAAGGGATCAAGAACCCGTTCACCTGCCACATCTGTAAAGTCAGCTTCGCTACCTACTCCAGATGCACGACCCACAAGACAACGCACGGCTTCTACAAGCGTTCGCTGGCAGACGCGAAGAAACCAGACAAACCTAGTCAGGAGGAGGCCGGTCCTTCGGCGAACGGCATTCTGGGATACGGCGGGTTTCCGGTCGTCAAACACTTCCTGTGCGAGGACTGCGGGCGGTCGTACCTGCACTGGACGTACCTGCAAGTCCACAGACGTATGAAGCACGCCAACGAGAACTTTATGTACAAGTGCAATTATTGTGACTTGACATTTCCTAACAGTTGGAGTGTGGCGTACCATAGGAAAAAAGTTCACGGAAAGACCGGTCTAGACGAAGGGAATGGGACCACAAAAattattaaagatgattacaaGATCCCTTGTCGCGATTGCGAAGAAGTGCTGCCAAACAAAACTGCGCTGTATAAACACAGGAAGAAGGAACACAGTGATATGTCGGAGCGAATAAATATGGTAGCTTCCCCCGCAGTGGCCCATATGTGCCACGTATGCGACAAGCAGTACGCGTCGCGCGCCGGCCTCGACGCGCACACGCGCACGCACACGTCGCGCGCCGCGTGCGCGCAGTGCGGCGAGAGCTTCACGCACACGCACTCGCTGCACAAACACCTCAAAGAAGTCCACGGCCACGAGCTCGACTTCCACTGTAACGTGTGCGACAAACGCTTCAATTCGCGCGCGGACCTCTCCGCGCACATCCGCACGCACAGCGCCGCGAGGCCGCACGCGTGCGCCGTGTGCGGGCACGCGTTCCGCACGCTGTCCATACTGAACGAGCACACCAGGATACACACAGGCGAGCGGCCGTTCCCTTGCGACGTGTGCGGCGTCGCCTTTAGGAGATCGACCGCCATGCGGAACCACAGGCTAATCCACACAGGCGTACGCGCGTGGCCATGCACGCGCTGCCCGAAGCGTTTCCGCATCCGGTCCGATCTGAACAACCACTTACGGATAAAACACCCCGCACAATTGGCCGTCATTGAGGTGGCGGGCCTCAACCCGGGGCCGGAGGAGGTGATGGAGTGTCTCACCGCCAACCACATCCCCCACGAAAACGTCATCGAGATCACTAAGATGTCTTTCGCTAAGGGGTCGTCAAGTATCGTCCCGGATTGCTCCCGCGCGCTGACGATGCTCTCCAGCGTCCCGAGGATGCACGTGGCTTGGGGACGCGTGCTTCCCGTCCATTCTGTTGGTAACCCTACGTGGGGCATGAGCGCAGACGGTCTTCAGCCAACGGCGCGGCGCGGGCGCGGCATCGCGCGCAACCCGCGCCGGCCCGCCATCCTGCAGCGACAGGCCAACAGCCAGGAGTGCTCTTCCGCGGTACTGCACGCGCAGCGACGATTTGTGATTGTTGTTGATGATGAACAATTTGTGCAGGATCTGACAGAGTTAAACGTCCAAATGCTTCTCCGGCACAACGCGCTCAATAACAACCAAGTGGCGCTGCCAGTAGACGACACTCTGCTCATCGAATAA
Protein Sequence: MTEEQPPLMVCMENAAGEEVSLSIEPHDDFQTFLDKANALLGYEVDLNSVTRYQPVALTDNAYQFLMNAENNILEYPQLGSQSFDEMLGSNDANDDLVYVLDDGTQIKASQIHFDNEDPPVDFTAEKIPFVKYVDDGHDDIEEPGDVDLRMINIIESPVASWSGKSSPKKGFVNSLPFKQVCNYTSGFEAQFTQYLEANGDKTFTSLNPVNARNKSPRSVIRDNYKKYDDVYNRNDNYKLTRDEVLNMFKDPPIGLPYDSSQGYSEKRRHVRKTDPSRPVYKSWNCKPLPYVDVDGNLIGPNESQNCFICEKFVENSIEKLYLFDNEDQRLHRSSPPRKLSTQLKIICEQCLNENFKPSRMKSPNKNLKSDEYLVIRNNQQYIFQKTNPVDFKNARGGFVNIGEASAIIKKIETGMLKGNQAKQFDFFKVEIGSDGEIIKDKDVIKDENQSDVEIVEGPEIDDVIDNLEEADEQVKEFLGMYERDSNAVNELKCRFCEQVFADLPQLMEHGDAHKHVTEDGEVFPCPLCNYEPSATTTEKKPKKEPESTEGESTLVIKTEVKQEALDTSDEEAIWIVHTADADAASQLHTLLKVYTCIRVLSPGAAVLKVRQIMMDVSTHKCRKRGRKRKCTNKDTVICVPTKEDFIKRAQGRHRQDDSGVNDLFITKPRKKKTTELTSDPQIVTCHNCNESFTSKVRLKFHMQFHDPTSSMLIRNGQYACRQCAGVVFATETQLFDHVHFQHLKQRRWQCPVQDCGKTFFLRATLTKHSRTHTDTRRYVCGTCGKRFLDKQTLDEHGVTHLQIKPFQCHICLKQLTRRSRLRMHLRAHEEALCPALVLVCAACRRAFCDVAAAQEHAVKSSECIEAFEKEVKEAAEEPAAVLSPTSGLVRPTQRKPESLLTAPIPREAYCAGAAALLTPLARELRATIRAVRIEKAFRCEYCEDVFYLEEALNSHRVIHKGIKNPFTCHICKVSFATYSRCTTHKTTHGFYKRSLADAKKPDKPSQEEAGPSANGILGYGGFPVVKHFLCEDCGRSYLHWTYLQVHRRMKHANENFMYKCNYCDLTFPNSWSVAYHRKKVHGKTGLDEGNGTTKIIKDDYKIPCRDCEEVLPNKTALYKHRKKEHSDMSERINMVASPAVAHMCHVCDKQYASRAGLDAHTRTHTSRAACAQCGESFTHTHSLHKHLKEVHGHELDFHCNVCDKRFNSRADLSAHIRTHSAARPHACAVCGHAFRTLSILNEHTRIHTGERPFPCDVCGVAFRRSTAMRNHRLIHTGVRAWPCTRCPKRFRIRSDLNNHLRIKHPAQLAVIEVAGLNPGPEEVMECLTANHIPHENVIEITKMSFAKGSSSIVPDCSRALTMLSSVPRMHVAWGRVLPVHSVGNPTWGMSADGLQPTARRGRGIARNPRRPAILQRQANSQECSSAVLHAQRRFVIVVDDEQFVQDLTELNVQMLLRHNALNNNQVALPVDDTLLIE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -