Talt001802.1
Basic Information
- Insect
- Tortricodes alternella
- Gene Symbol
- -
- Assembly
- GCA_947859335.1
- Location
- OX401975.1:18031948-18038975[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 1.7e-05 0.0011 19.7 0.6 1 23 274 296 274 296 0.98 2 11 0.0031 0.2 12.5 6.3 1 23 302 324 302 324 0.97 3 11 0.0003 0.019 15.7 0.4 1 23 330 352 330 352 0.97 4 11 0.0001 0.0065 17.2 2.3 1 23 358 380 358 380 0.96 5 11 0.013 0.82 10.6 2.9 1 23 452 474 452 474 0.98 6 11 0.00013 0.008 16.9 3.8 1 23 500 522 500 522 0.98 7 11 5.8e-06 0.00037 21.1 0.7 1 23 532 554 532 554 0.98 8 11 5.8e-05 0.0037 17.9 1.5 1 23 560 582 560 582 0.96 9 11 7.7e-05 0.0049 17.6 1.0 5 23 591 609 588 609 0.96 10 11 0.0012 0.077 13.8 3.2 1 23 614 636 614 636 0.98 11 11 0.0032 0.2 12.5 1.1 1 23 641 663 641 663 0.93
Sequence Information
- Coding Sequence
- ATGTCTCTGGAGACAGTATTCGTCAAACAGGAATTAGAGTGGGAATGTGACAGCAATAAAAGTCCTCGCATATTCAAAAGAGAGTGGGAGCATGCGGAGAACGAAGAATATATGCGCGCTAATCAGGAAATGCTGTGTAAAGGTGACGCGAAGGAATTTCTGGTGCGTGTGAAGTTAGAACGACAGCGGAGTTGTAGTGAGGATGAGGAGAAAGAGGGCTGTAACGCGAGCAAGAACCAAACTTATGTAAAGGAGGAAAGGGAATGGGAGCCCGAGTTAGACCCCGCGGAAGCGAGTCACAAGGTCAAGCGCGAGCTGCTGAGCCCTGAAGAGCCACAACTGCAAAACATCGCCCACAAAAGTAGTAAGCCAACAGCCTTGAAGACAGAACGCCGGTGGAGCGATAGTAATTACGAGAAACGTATGCCTGTTAAAGAAGAAAGTGAGGGATGTGATGCAAGTGTACAGCAAACTTGCGTTCTGGAGCCTGACTTGGTGCCTGCCGACCTGGTTTTGGGTCCTGTAGGGCCGCAACTGCAAGACATCGCCTTCTTGCTGGCTCACAGCAAAAGATCTGCCTTAAAACAAGCAAAAGCTAAGACAGTTGGGGGTCGCGGAGGCGCGCCTGCTTGCAGGAATAATGACAGCCTCGACTCCACTGAGGAGCTCTTAGTGCCCAGAGCATCCAGCATGAGGCTCAAAAACTCCAGTAATTCAGAGCAAAAATCATTCAACAAGAAATCAAGTCTCAAGAACTGTTCTAACAGTCCAAGGAAGACTAAGTTAAAATCGCGTCAAATCCGCACCGAGAAAAGATCATTCACCTGTGACTTCTGCGGGAAACAGTTTGCCAGGAAACAAACTTTTATTGTGCATATAGAAATTCATATGGGGATAAAAAAATACTTTTGCAGAACTTGTAATAAGGAGTGCACAAACTCTTTTAATCTAAAGAGGCATGAGTACACCCACATGGATCACAAACCATTTTCCTGTGAACTCTGCAACAAGCAGTTTGTAGAACTGCAGAAGCTAACAGTGCACATGCAAGGACACACTGGAGAAAAACCCTTTTTCTGTGATATTTGCAAGAAGAGGTTCAGAGAATCGTACCAATTAATCAACCATAAACAACTCCACGTGAACTTAAAATCCCATGAAAAACTAAATGCTGGACATAAACCGTTTTCCTGTGAAATTTCAAACCAAGAACCCTTAGAATTTGTTCACGTAATGATAAAAGAGGAGCCCGTGGAGTTCGTCGACGTTGATGTAACTATCGAGCGGCTCGACTATAAGGAAGAGAATGAAGATTCTTTGCCCGACAGCCATGACAAAGCATCCCCTACAACCTTCACCTGCGAGATCTGCATGAAGCAGTTCCAACAAAAGCGGTACATGATGGCGCACCGGAAGAGACATCCAGAGTTTGAGCAGCTCTCTATCACGCTCCAGGAGCACAAGCTGCGAGTGGAAGAGGAAAAACGGAACCGGACTTTTCCCTGCCTTTACTGCCAAAAGGAATTCTGCAACCGTTCACGAGTCAACCGCCACATGAAAATCCACACAGATGACAAAGTAGTCGAAAAAAACTTCATATGTGACTCGTGTGAGAAGTCCTTCGCTCATAAACGGGAGCTGATCGTCCACATCCGAGTGCACACTGGCGAGAAACCCCACAGTTGTACGACATGTGGCAAACGATTTTCCCAGCTGGCGAGCTTAATGTACCATGTGCAAGGGCACAGCGGGAAGAAACCGTTCGTTTGCGAATGTGGTAAACGGTTCACCAGACGAGTTAGTTTAGCGAGACACAAGCGGATCCACGGCGAGAGACCTTTCAAATGTCGCCTGTGTAAGAAGAGCTTTGTACATCGAAGAGTTTTGGTTTCTCACGAGCGTATTCATGCGCGGAAGCCGTTCTTGTGTGAAGTGTGCGACAAGAAATTTGTTTTGAAGGAACATTTGGATGAGCATAAGTTGTTGCACGCTGGCACGGTGTGTGACAGGCAAATTCGTAAACGATCTCTTCCGAAATGA
- Protein Sequence
- MSLETVFVKQELEWECDSNKSPRIFKREWEHAENEEYMRANQEMLCKGDAKEFLVRVKLERQRSCSEDEEKEGCNASKNQTYVKEEREWEPELDPAEASHKVKRELLSPEEPQLQNIAHKSSKPTALKTERRWSDSNYEKRMPVKEESEGCDASVQQTCVLEPDLVPADLVLGPVGPQLQDIAFLLAHSKRSALKQAKAKTVGGRGGAPACRNNDSLDSTEELLVPRASSMRLKNSSNSEQKSFNKKSSLKNCSNSPRKTKLKSRQIRTEKRSFTCDFCGKQFARKQTFIVHIEIHMGIKKYFCRTCNKECTNSFNLKRHEYTHMDHKPFSCELCNKQFVELQKLTVHMQGHTGEKPFFCDICKKRFRESYQLINHKQLHVNLKSHEKLNAGHKPFSCEISNQEPLEFVHVMIKEEPVEFVDVDVTIERLDYKEENEDSLPDSHDKASPTTFTCEICMKQFQQKRYMMAHRKRHPEFEQLSITLQEHKLRVEEEKRNRTFPCLYCQKEFCNRSRVNRHMKIHTDDKVVEKNFICDSCEKSFAHKRELIVHIRVHTGEKPHSCTTCGKRFSQLASLMYHVQGHSGKKPFVCECGKRFTRRVSLARHKRIHGERPFKCRLCKKSFVHRRVLVSHERIHARKPFLCEVCDKKFVLKEHLDEHKLLHAGTVCDRQIRKRSLPK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -