Talt014439.2
Basic Information
- Insect
- Tortricodes alternella
- Gene Symbol
- -
- Assembly
- GCA_947859335.1
- Location
- OX401972.1:2990895-2994865[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.0077 0.49 11.3 0.1 2 23 4 26 3 26 0.96 2 22 1.4 88 4.2 0.4 2 23 51 73 50 73 0.93 3 22 0.0028 0.18 12.6 0.3 1 23 94 116 94 116 0.97 4 22 2.6e-05 0.0016 19.0 0.2 1 23 120 143 120 143 0.96 5 22 0.023 1.5 9.8 0.2 3 21 149 167 148 168 0.91 6 22 0.29 18 6.3 1.0 2 21 176 195 175 198 0.87 7 22 0.0025 0.16 12.8 3.0 1 23 205 228 205 228 0.96 8 22 0.0012 0.078 13.8 0.8 2 23 233 255 232 255 0.95 9 22 1.8e-05 0.0012 19.5 0.7 1 23 261 283 261 283 0.97 10 22 2.2 1.4e+02 3.5 0.1 2 23 324 346 323 346 0.91 11 22 2.8 1.8e+02 3.2 0.3 2 23 371 392 370 392 0.92 12 22 0.0082 0.53 11.2 1.2 1 23 414 436 414 436 0.97 13 22 0.3 19 6.3 0.9 2 23 471 493 470 493 0.93 14 22 4.6 3e+02 2.5 0.2 2 23 518 540 517 540 0.90 15 22 0.02 1.3 10.0 0.8 1 23 562 584 562 584 0.97 16 22 0.0046 0.29 12.0 0.1 3 23 590 611 589 611 0.95 17 22 0.0079 0.51 11.2 0.7 1 21 616 636 616 637 0.94 18 22 1 66 4.6 0.2 1 10 644 653 644 667 0.86 19 22 0.018 1.1 10.1 1.8 1 19 674 692 674 697 0.83 20 22 0.0016 0.1 13.4 5.5 1 23 701 723 701 723 0.96 21 22 1.3e-05 0.00082 20.0 0.9 2 23 730 751 729 751 0.96 22 22 0.017 1.1 10.2 2.3 2 23 758 779 757 780 0.94
Sequence Information
- Coding Sequence
- ATGCAGGTCCAATGTTCCCTCTGCTTTGCGTTGTTCGACGATCCCAGTCTATTCAGAGCTCATATGGACACGGAACACGCTTGCGTTGATAGATCTCAGGCGCTTGCATCAAACAGATGCGGTTGTACGCGTGTAGATATAACTGACTTGCGTTGCAAAAGTTGCATGACCAATTTCGTTACCATAGAAACTTTAGTGTCCCATTTGAACGAAACACATCAGTTAAAAATCGACGGGGATCATCACGGGCTAGTGCCGATCAGGCTAGAAAAGAACCGCTTCCAGTGCCTCGTCTGCTCTAAACTATTCACGGGTCTCAAACAACTCTGGAGACATGCGGGTACGCACTTTACTAAATATATATGTGATATTTGTGGCAAGAATTTTGAAACACCATCCGGACTCAGCCTGCACTCTAGGTACACTCATTCGTCAAGTGAAATCTGTAAACACTGCAAAAAAGCCTTCCCCTCCGCGGAAGCCCGAAAGGAACACGTTAAAGCAACTAAAGCGTGCCACCCTACTCCATGCCATATTTGCAATGAACGCTTCCTACATTGGGACCAAAAAGAAAATCATTTGGTCGATGTCCATGGTAAAGAAAGAAAAGTGTTCCCTTGCACAGAATGCGACAAAGTCTTTAAACACCGAACTATCCTGTACGTACACTTTAAAACCACCCACACTGAAGACAATAAATGCCTTTATTGTGAAAAACAGTTTCCTTCTAAACCTTCATTAAAAGAACACACGGCGAGGTATCATACAGGTGAAAGACCATTCGCTTGTAACGTGTGCGACAAGACGTTCATAGATAAACAGTCCATGCAAAGGCATTCAATCACGCATGATGATAGCAAGAAGTTCGCATGTATAGAATCGAAGAACCCAGAAGTCGCCAAGCGGAATGCGTCTATCATATTGAAACATTCCTCCGTCTATCCGTTCCAACAAACTGCTAATTTGCTGCGTTGTTATTTCTGTTTAGACGTTTATGAAGACCCGCAAGAGCTTAGGGATCACATAGATTCACTACACGCTAGCATTGATAAATCAGAAAACATCCCTATGGAATCCGACGCGCTGGTTCGAGTAGACATCACAGACTTGCACTGTAAAATATGCTTTGATGAATTTGATAGTCTAATAGAACTGGCATTACATTTAAGTGAGCACGACCTGAATATCGATATCAGAGAGCAAATCGCCCTCGTACCTTTCAAGCTTGATAGCAAACGGTTCGTCTGCGTCATCTGTAAAAAGGCATGTCCTGGCTTCTATCAACTGTCTCGACATACGGTGACGCACTTCGACTTACTTGGATGGAGTCGGGATGCCGCCAAGCTGAACGCCCAAATTATACTGAAACACTCGACGGCGTATCCGTTCCTGCAATCCTCTTCCTCGTTGCGGTGCTGTTTTTGCCGGGACATTTTCAACGATCCCACTATGTTCAGGGCACACATGGACATCGTTCATATGGGCGTTGATAGGTCCACGTGCAACAAAGTTAACCTGGACACGCAGACCCGTGTAGACGTCACGAACCTGCGCTGCGTAAAATGCATAAAGATGTTCGCCTCCATAGAAGCCGTCGCGAAACATTTGCACGACGAACACGAACTCAACATCGAGTTGGGTCAAAGCTTAGGTCTAGTGCCTTTGAGACTAGAGAAAGATCGCTTCGAGTGCGTCGTTTGTTCTCAAAAATTTACTAGCACTATGCAAGTGTCCAGACATACCGGGACGCACTATTTTAGAAACATATGTGACATTTGTGGGAAAAGGTTCGAGAGTCGAAGAGGAATCGATGCCCACGTTAAAGTACGTCATACCCTCAGAACTTTTTACTGCAGAAAGTGCAAGAAATCTTTTCCGACAATAGAAGCTAAGAAGGAACATATGAAGATTAATAAATCATGTTTGCCGTTTAGATGTAATATATGCAAAGAGCGTTTCTTATTTTGGGAGCGACGAGAGGACCATTTAGTCGAGGCTCATGGCAAAGAAAAGAAATTGTTTCGGTGTACTGAATGCGAGAAAGTTTTTGAACGTCGCACGCTGTTGTATTTTCACTTTAAAGCTACTCATACTGAAGATCATAAATGTACGTACTGTGAACTGACTTTTGCTACGAAACGAGACTTACGTGAGCACACGCACCAGCATACCGGAGAGCGCCCTCTCAAGTGCCACGTCTGCGATAAGTCCTTCGCTAGAGACAAAGCCTTAAGGCAACATCTGATCATTCACGATGACAGCAAAAAGAAAGTATGCACCGTGTGTAGCCGCCTCTTCACTGACCTCAAGAAACTGAAAATGCACGTTGCGAAACATCACCCTGAAGTTTATCAACAAGAATTTAGTCTTAAACGTCGATGA
- Protein Sequence
- MQVQCSLCFALFDDPSLFRAHMDTEHACVDRSQALASNRCGCTRVDITDLRCKSCMTNFVTIETLVSHLNETHQLKIDGDHHGLVPIRLEKNRFQCLVCSKLFTGLKQLWRHAGTHFTKYICDICGKNFETPSGLSLHSRYTHSSSEICKHCKKAFPSAEARKEHVKATKACHPTPCHICNERFLHWDQKENHLVDVHGKERKVFPCTECDKVFKHRTILYVHFKTTHTEDNKCLYCEKQFPSKPSLKEHTARYHTGERPFACNVCDKTFIDKQSMQRHSITHDDSKKFACIESKNPEVAKRNASIILKHSSVYPFQQTANLLRCYFCLDVYEDPQELRDHIDSLHASIDKSENIPMESDALVRVDITDLHCKICFDEFDSLIELALHLSEHDLNIDIREQIALVPFKLDSKRFVCVICKKACPGFYQLSRHTVTHFDLLGWSRDAAKLNAQIILKHSTAYPFLQSSSSLRCCFCRDIFNDPTMFRAHMDIVHMGVDRSTCNKVNLDTQTRVDVTNLRCVKCIKMFASIEAVAKHLHDEHELNIELGQSLGLVPLRLEKDRFECVVCSQKFTSTMQVSRHTGTHYFRNICDICGKRFESRRGIDAHVKVRHTLRTFYCRKCKKSFPTIEAKKEHMKINKSCLPFRCNICKERFLFWERREDHLVEAHGKEKKLFRCTECEKVFERRTLLYFHFKATHTEDHKCTYCELTFATKRDLREHTHQHTGERPLKCHVCDKSFARDKALRQHLIIHDDSKKKVCTVCSRLFTDLKKLKMHVAKHHPEVYQQEFSLKRR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -