Talt016718.1
Basic Information
- Insect
- Tortricodes alternella
- Gene Symbol
- Sall1
- Assembly
- GCA_947859335.1
- Location
- OX401968.1:22278903-22280291[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00055 0.035 14.9 0.1 2 23 143 164 142 164 0.97 2 11 0.027 1.7 9.5 2.0 1 23 170 193 170 193 0.89 3 11 0.00013 0.008 16.9 2.6 1 23 200 222 200 222 0.99 4 11 1.9e-06 0.00012 22.6 0.4 1 23 228 250 228 250 0.98 5 11 0.00016 0.01 16.5 0.7 1 23 256 278 256 278 0.97 6 11 0.00018 0.011 16.4 1.5 1 23 284 306 284 306 0.98 7 11 5.3e-07 3.4e-05 24.4 1.2 2 23 313 335 313 335 0.97 8 11 0.00022 0.014 16.1 0.7 2 23 341 359 340 359 0.90 9 11 0.00036 0.023 15.5 3.1 1 23 365 388 365 388 0.93 10 11 0.0043 0.27 12.1 0.5 1 23 394 419 394 419 0.95 11 11 4.3e-05 0.0028 18.3 2.8 1 23 425 448 425 448 0.97
Sequence Information
- Coding Sequence
- ATGGTGGATTCAAAGATATGTCGGGTTTGTCTCAGCAGGCCCGGTGATACCTCCCTGTTTGAGACAAACGATGGTTTACAATACAGTGCTAAAATTATGGGATTTGTAAAGATAATTATTGCGGAGGACGATGGCTTCCCTAGCATGATATGTTTAAACTGCACCGCTGAGCTTTCTCTTTCCTACGAATTCGTACGAAAATGCGAAGCGTCCGACCAGGTATTGAAGTCGATCAAACTAGTCCCCAAATTGGAAGCAGCGGTAGATATCAAGAAGGAAGACATAAAGGAGGAGCCAGATGACACATTCCTCGACTTTAGCTTCTTAGACAGTGATAACTCTAGCTGGGAAGAGTTAGAGGGTAAATGTAAACAAAAAAAAGCAAAGTATGTTAAAAAGAAAAAGAAGGGCAAAATGGAGCCTATACAATGTGTTACCTGCGGGCAGATGGCTTCCAGTCTCTCTGCCATGGAGATTCACATGCGGACTCACACTGGAGAGAGACCATTTCCTTGCTTGTCCTGCGATTCGCGTTTTCCAACAAAAGGAGCTTTAAAACGACACTGCGAGACATATCATTCTCGAAGAGAAAGAAAGTATACCTGTGAGACTTGTGGCAGCTGTTTCTTTAGAAAAAATGAAATCATAACCCATATGAGGGTACATACAGATGAGAGGCCATATGCATGTCCATTCTGTGGTAGAAGGTTCCGTCAAATAGCTTCACTTATCCGCCATAAGAGAATCCACACAGGCGAAAAGCCATTCTCTTGTACTATTTGTAATAAGAAATTTGCTGATAAAACAGTTGCCAAAAAGCATTTATTAGTGCATAGCGATGAAAAAAAGTATAGCTGCCACCTCTGTAACAAGGCAATGAAAAGCAAAAATGCTTTAAATGTTCATATGAACCTGCATGTCAATAAGAAACAAAATGTGTGCAACTACTGCGGTATGACCTTTTCCATGAAAGGTAACCTCAAGACTCACATACGAAGGAAGCACTCAGAGAAGTCTGGGCAATGCAATATTTGCACCAAAACTTTTTCAGATTTGGAGGCTCACATGCGTAAACACACCGGCGAGAAACCTTTCAGTTGTGCCATGTGTCAACAGAAATTTGCCACTAAAAGAAGTCTGACTCACCACATGGCGTTTAGGCATGAAAATGCTGCCAAATTCAAATGTTCTATTGGGGATTGTACAAAAACATTCCCTACAGCCACAATGTTAGAGTTTCATTTGCTGAAGCAGCATACAAATCACACACCATACATCTGCCAACACTGTTCCAGAGGATTCTTTAGAACTAGTGATCTGTCGAGGCACCTGAGAGTGAGCCACATGGATCTGCAAATCAAAATGCCAATAAAACCTCCCTTGACCTAA
- Protein Sequence
- MVDSKICRVCLSRPGDTSLFETNDGLQYSAKIMGFVKIIIAEDDGFPSMICLNCTAELSLSYEFVRKCEASDQVLKSIKLVPKLEAAVDIKKEDIKEEPDDTFLDFSFLDSDNSSWEELEGKCKQKKAKYVKKKKKGKMEPIQCVTCGQMASSLSAMEIHMRTHTGERPFPCLSCDSRFPTKGALKRHCETYHSRRERKYTCETCGSCFFRKNEIITHMRVHTDERPYACPFCGRRFRQIASLIRHKRIHTGEKPFSCTICNKKFADKTVAKKHLLVHSDEKKYSCHLCNKAMKSKNALNVHMNLHVNKKQNVCNYCGMTFSMKGNLKTHIRRKHSEKSGQCNICTKTFSDLEAHMRKHTGEKPFSCAMCQQKFATKRSLTHHMAFRHENAAKFKCSIGDCTKTFPTATMLEFHLLKQHTNHTPYICQHCSRGFFRTSDLSRHLRVSHMDLQIKMPIKPPLT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00325666;
- 90% Identity
- -
- 80% Identity
- -