Talt014745.1
Basic Information
- Insect
- Tortricodes alternella
- Gene Symbol
- -
- Assembly
- GCA_947859335.1
- Location
- OX401972.1:7666587-7689930[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.11 7.3 7.6 0.1 1 23 120 142 120 142 0.92 2 14 0.00045 0.029 15.1 2.2 1 23 271 293 271 293 0.99 3 14 2e-05 0.0013 19.4 0.5 1 23 299 322 299 322 0.97 4 14 0.0011 0.069 13.9 3.7 1 23 327 350 327 350 0.94 5 14 1.3e-05 0.00084 20.0 0.7 2 23 524 545 523 545 0.97 6 14 0.00014 0.0086 16.8 3.1 1 23 551 573 551 573 0.99 7 14 0.14 9.2 7.3 4.4 1 23 624 646 624 646 0.96 8 14 0.0012 0.078 13.8 1.6 1 23 681 703 681 703 0.95 9 14 0.00025 0.016 15.9 1.2 1 23 709 731 709 731 0.96 10 14 0.00058 0.037 14.8 2.1 1 23 740 762 740 762 0.98 11 14 0.00014 0.0087 16.8 0.6 2 23 809 830 809 830 0.97 12 14 0.02 1.3 10.0 6.3 1 23 847 869 847 869 0.96 13 14 1.2e-06 7.8e-05 23.2 0.7 1 23 875 897 875 897 0.98 14 14 5.7e-07 3.6e-05 24.3 3.1 1 23 903 926 903 926 0.98
Sequence Information
- Coding Sequence
- ATGGATCCCATGGCTACGGAAATAGATCCTTTAAGTACATATGAATACCAGTCATTTGCTTATCCGCACCTTCAATACAACACTTATCCCTACAATGTCAAGCTTGAACAACCGCTCGCCTATATGAACAATAACATTCACCAAAACACACAAGTCAATGATATACCGCGCAATGATATACCTCAAAATGATACACTTCAACGTGATATCATAAATGGTCAGAATGTGAACGAAGGAAATTCCACTGAGCCAAATCAACTGGAGAAATTAGTTTTCGATTTGAACAAGGTTAAAAAAGAAGGAGGAAAGAAAAGCAGTTACTGGTCACAGAAGATTAATGACGAGAACTTTCCATTTTACGCTTGTGCTTTATGCAACGTTAGTTTTAAGGAGCTCCGGGACCTAGATTCGCATTTAGTTGACCACAAAGAGAGGTTAACAAGCTACGATTTACGATTGAAGAATAAGTTAAAGAAAAAGAAGATTAAGAAAGAACAGAAGAAGTTAAAGAAACTAGCGAAAGAGGTGAAACTGGAGGTTGAGATTAAACCGGAGGACGGATACATTGGGAGTGAAACGGCCGCTGATTTTTTAAGCAATCCTAATCCTACTCCTGTGAATGCGAATAATATTAGTGATACAGAAAAACCTGGAAATAGTGATGTAAATATAAGTAACAATGAAATAAAAGCTGATGAAAAAAAAGGTGACGAAATAAAAGGTGCAACGGAAGACCTGAATAAGGTGGTTATAGGTGCAGAAACACAGAATGCTGAGAAAGAAGAGTACAATAAGGATTTGGAGAAGATTTATAAATGTTCCGCTTGCCAGAAGCAGTTCTCGTTGAGCTACTATTTGAAATTACACGTCAGATCGCATACAGATGAAAAACCTTACACATGCAGCGAGTGCGGACAGTCCTTTATTACGGCGAGCAAACTCGGGCGGCATAACAAGAGAATACACTTAGCGATCAAATACCAGTGCAGGATATGCTATAAGATATTCACAAGATTTGAGTATTTGACGCGGCATTTTGACAAAAAACACGCCGAGGACAAATTAGACGGCGAACCGTATGATTACAACGCCATCTTGCCGTATCTGAAAGAACTAGAGGAACAGCTCCGTGAGAAAGCGGAGAAGGAAACCAAGCCGAAGGCGGAGGACCTCTGGAACGACTGGCCTGAGGTGGACCAGGCACATTTCACGGAGCAGGACCGGAAGGACTTCCTGGACGAAGATAAGAAAGACTTTGATACGCACGCTATGAACCACTTGGACATCGTTATGGATGATGTTAAGGTGCCGGTTGAGCAGATGGAGACGACGGAAGTGGAAATAAAAATTGAACAAATAATTGAACCGGAAGGCGCCGGCGGGCATGACGACCACCACCACAGCGACCACGACCAGAACGACCAGCACGACCAGCACGACGATGTCAAAGACGAAAGTTTGTCGGACGAGGACTACTTCCCCTCGAACACGTGGGCGGAGCCCCCCAAGATGGAGCCGTGCCCGCTCTCCCCCCCGCGCGGGCGCCGCTCCAAGCTCGACGGTCCCTTGAAATGCAAGATTTGCGAGAAATCCATTAATACCCCGTCATACATGAGAATACATATGCGTACCCACACCGGCGAGAAACCGTACAAATGCTACACTTGTGGCAGGGGCTTTATTACCTCCAGCAAGATGCATAGGCACGTGTTGACGCACTCTGATGACAAAGATGTCAAGGAAGAGGGGGTGGACGTGAAAGAGGAGACGAAACAAGAAGGGGAGGGGGAGGAGGCCGACGGCACAAAACCAAAAACGAAACTCCGCAAACGCAACACCGATAAGAAACGCGATTACCAGAAGCGGCCGCACGCCTGCGAGTTCTGCCAGAAGCGGTTCCTCCACCTGGAGATGCTGCAGGTGCACCGCAAGAGCCACGAGGGGGAGAGCGCCGTGCTGCGCTGCTACTACTGCCTCGCGGACGTGCTGGACGAGGCGGCGCTGAAGGACCACGAGGCGACGCACGCGGGGCCGAAGCCGTTCCTGTGCACGCTCTGCGGGAAGGTGTACAAGCGGCGGGAGACCATGGTATACCACAGAAAGAACCACAAGTCGGAGAAGAAGTTTATCTGCGACATTTGTTCTAAAACGTTCAACGCGCCCTGCAAACTGCAGCGGCACATCGTGAGCCACCGCGCGGATAAGTTCGTCCTGCGCTACGAGTGTCCCGTCTGTGCGCACATGTTCAATACTAAATACCATGTGCAAATGCATCTGGCGACGCATCAGAAGGAAGGGCTGATCCTAGAAGAAAACCGCGGTGAAATCCTAGCGATGGTACTACAGAACGCGCGCAAAATCCCGAAGCAAGGCGGCGCACCGTCCAACCTGACCGACCTGATACCGGCCGACGAGCGAAGCCGCGTGTGCAACATATGCGGCGAGGTATTCCAACACTTCTACTATCTAGAAGAGCACTTGAAGAGCCACGGCAGCAGAATAACTATAGAAGACGAGAATAAAGTAGAAGAACGGAAGCATGTCTGTCAAGTATGTAATAAGAGTTTCAAACTGCACTATTATTTAAAGCTACACAGTTTTACGCATACAAAAGAGAAACCATACATATGTCAGCAGTGTGGCAAGGGCTTTATAACTAAAGGTAAGTTAAAACGTCACTTGGAGACGCATTCCGGGCTTAAGAAATACCAATGTCATATATGTTATAAGTTCTTCACGAGACCGAGTTATTTGAGGATACACGTGAGAACGATTCACGGGAATCAGGATTATAATTTTAGAGTTGGAAAGGAGTTTGGTATAGCGGCGCCTTTGAACGCTCTGTCGGTTATGACGCAGTTTAGCGAATAA
- Protein Sequence
- MDPMATEIDPLSTYEYQSFAYPHLQYNTYPYNVKLEQPLAYMNNNIHQNTQVNDIPRNDIPQNDTLQRDIINGQNVNEGNSTEPNQLEKLVFDLNKVKKEGGKKSSYWSQKINDENFPFYACALCNVSFKELRDLDSHLVDHKERLTSYDLRLKNKLKKKKIKKEQKKLKKLAKEVKLEVEIKPEDGYIGSETAADFLSNPNPTPVNANNISDTEKPGNSDVNISNNEIKADEKKGDEIKGATEDLNKVVIGAETQNAEKEEYNKDLEKIYKCSACQKQFSLSYYLKLHVRSHTDEKPYTCSECGQSFITASKLGRHNKRIHLAIKYQCRICYKIFTRFEYLTRHFDKKHAEDKLDGEPYDYNAILPYLKELEEQLREKAEKETKPKAEDLWNDWPEVDQAHFTEQDRKDFLDEDKKDFDTHAMNHLDIVMDDVKVPVEQMETTEVEIKIEQIIEPEGAGGHDDHHHSDHDQNDQHDQHDDVKDESLSDEDYFPSNTWAEPPKMEPCPLSPPRGRRSKLDGPLKCKICEKSINTPSYMRIHMRTHTGEKPYKCYTCGRGFITSSKMHRHVLTHSDDKDVKEEGVDVKEETKQEGEGEEADGTKPKTKLRKRNTDKKRDYQKRPHACEFCQKRFLHLEMLQVHRKSHEGESAVLRCYYCLADVLDEAALKDHEATHAGPKPFLCTLCGKVYKRRETMVYHRKNHKSEKKFICDICSKTFNAPCKLQRHIVSHRADKFVLRYECPVCAHMFNTKYHVQMHLATHQKEGLILEENRGEILAMVLQNARKIPKQGGAPSNLTDLIPADERSRVCNICGEVFQHFYYLEEHLKSHGSRITIEDENKVEERKHVCQVCNKSFKLHYYLKLHSFTHTKEKPYICQQCGKGFITKGKLKRHLETHSGLKKYQCHICYKFFTRPSYLRIHVRTIHGNQDYNFRVGKEFGIAAPLNALSVMTQFSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -