Talt014681.1
Basic Information
- Insect
- Tortricodes alternella
- Gene Symbol
- -
- Assembly
- GCA_947859335.1
- Location
- OX401972.1:6767439-6778495[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 25 0.003 0.19 12.6 3.1 1 23 438 461 438 461 0.93 2 25 0.19 12 6.9 0.1 2 23 487 509 486 509 0.96 3 25 0.0019 0.12 13.2 1.1 1 23 534 556 534 556 0.99 4 25 0.47 30 5.6 1.1 1 23 560 582 560 582 0.84 5 25 1.2 78 4.3 4.1 1 23 586 609 586 609 0.93 6 25 0.71 45 5.1 6.3 2 23 616 638 615 638 0.90 7 25 0.0066 0.42 11.5 0.3 1 23 645 668 645 668 0.94 8 25 0.0044 0.28 12.0 4.8 1 23 674 696 674 696 0.97 9 25 3e-06 0.00019 22.0 2.8 1 23 702 724 702 724 0.98 10 25 2.1 1.3e+02 3.6 0.1 1 16 730 745 730 746 0.92 11 25 0.087 5.6 7.9 1.5 1 23 791 813 791 813 0.96 12 25 0.21 14 6.7 0.0 2 23 842 864 841 864 0.93 13 25 0.15 9.3 7.2 0.2 2 23 885 907 884 907 0.94 14 25 0.0011 0.068 14.0 2.1 2 23 913 935 912 935 0.95 15 25 0.006 0.38 11.6 1.3 1 23 940 963 940 963 0.96 16 25 0.31 20 6.2 0.1 2 23 966 988 965 988 0.95 17 25 0.0065 0.42 11.5 1.6 2 22 995 1015 994 1015 0.95 18 25 0.005 0.32 11.9 0.3 1 23 1076 1099 1076 1099 0.95 19 25 0.17 11 7.0 0.6 3 23 1173 1195 1171 1195 0.94 20 25 0.00098 0.063 14.1 0.6 3 20 1202 1219 1200 1223 0.90 21 25 0.016 1 10.3 0.4 1 23 1228 1251 1228 1251 0.97 22 25 0.00026 0.016 15.9 0.4 2 23 1257 1279 1257 1279 0.94 23 25 7.3e-05 0.0047 17.6 4.7 1 23 1283 1306 1283 1306 0.97 24 25 0.00031 0.02 15.6 0.6 2 23 1313 1334 1312 1334 0.96 25 25 0.0066 0.42 11.5 3.1 1 23 1340 1362 1340 1362 0.97
Sequence Information
- Coding Sequence
- ATGGACTTCGACGAAATAGTTGTTAAAGAGAGCCCCGGCTTGTGCCGGTGCTGTCTTTCAGAAGGGTGTTACAAAGACTTGGGGTCGGAGTATAGTTGGATGAGTGAGACCGAAATTTATGCAGATATGCTGCTTGAATGCTTTGATATAAGCATATCGCAGCATGCCACAGGCCCTAATGGCTCCAACAGGCTCATCTGCGAAGTGTGCATCACCCGGCTGCGGGATGCCTGCAACTTCAAGAAGCAGGTGCTTGAGTCGGAGAAGAAGTTTGTGGACATGGTTGGCCGTGGAGAGTTTAGGCCCAAAGTGCTGTTGTACCAGACGCAGATGAAGACTGAAATAACTATGGACCTGGAAGAAGAGACTGGTGCTGATGATGCAGAGGTGGAATATCTTGAGGAGGATGTGGACTTTGTCGATGAGGACCTCAAAAACGAAGACTACGGAGAAGCCTCAGTGTCAGAGGACATAACAGTGTCAGCTCTAGCTGTGAAAGGCAAGCGGGGTCGTCCGAAGAAGAGCTCAACAGCAGTAAAACCGGAGAAGAAGGCCAAAGTGCCCAAGCTTGAAGACAAACCGACCAAGTCGAAGGCAGTTGCTAAAGTTGAAAATATGAGTAGTAGTGACTCCGAGGACGATGTGAAACCTCCGCTGGATATCTTAAACGCAGCCATGATTACAACAAGCAACTTGTTGCCAGAAAAATCGAGAGCCAAATACGAGAAGGCATATAAAGATTTTTTAGATTGGAGAATAAACAAACGCATGACTTCGATGTCCGAGAACGTATTATTAGCGTACTTTGAAGAATTATCAATGAAATTCAGTTCTGCCACCCTGTGGACTACTTATTCAATGGTCAAAAGCATGGTAAACATCAAGCACCAAGTGGATATCTCCAAATATTCTAAATTGACTACTTTTCTTAAGCAGAAAGCGGAGGGATATCAAGCGAAAAAAGCTAAAACATTTTCACCTGAAGAAATAATTAAGTTTTTAAATGAGGCACCAGATCAATTCTATCTACAGTCAAAGGTGGCACTAATATTTGGAGTAATGGGTGCTTGCCGCCGACAAGAACTTTATAATCTACAGTTTAGTGATGTCCATATCGTTGATAAAACCATTTTCGTAACTGTCCGCAATACAAAACCAAAAACGGACCGTGAGAAACCGCCAGAACGTGCGTTCACCGAAACGGACAATAAGTCCTTGTCGGCCACAAAACGCAATCGGCTCATGAAGGGCAACGCGATTCTTGTACTAGAAACCTCGACGGTCGTGCCTTTTAAATGGCAGAGACAAAATTATCTCTGCTTCTTCTGTCATAAGACCTTCAAAAGTACGGACGCCCTCAAAGAGCACACGAAAGCCGAGCATAAGAAATCAAACATAAAAGCCGCCGTTTCTTACCTAAGAAGGGACGAAAAAGTTAAAATTGACGTTTCTGAGATTGAATGTCGGCTCTGCACTCAAAGACTAGACGATCTCGACTCTCTCTTGAATCATCTCAGCACGATACATAACAAAACATTCACGGAACAATCTGGTTGTTTCGGCGTAATACCTTATAAGCTCGAAGGCGATTGTAAGTTGTTCCAATGCGCTGTTTGCAAGAAAGAGTTCCAATATTTCATCAAACTGAACGAACACATGAATATGCACTTCGGAAGTTATATATGCGAACTTTGTGGGAAGGCGTTTCTTAGTCAGAACCGGCTCCGTTGCCACGTGCTGAGCCACGGCTCTGGGTTCCGTTGCAGTCTCTGCCCGGAGACTTTCGATTCGCTAACGATGAAACACAACCACGAATGCAAAGTCCACAATAAGGAGAAACTCTGCAAATGCTACTATTGTGATGAAACATTTCCAAACTACATCCAACGTAAGAGGCATCACCACGCAGTTCATAATCTCGAGATCCAAGGATTCAACTGCCCGATCTGTCATAGAGCGTTCGAAATCGAAAGCAAAATGCAGGTGCACGTTAAGGAAGTGCACGTTAGAGAGAAGAATTTCTCGTGCAACATGTGTGAGCAAAAGTTCTTCTCCAAAACGCACGTTCAGAAGCATATGGTGAAGCATTTTGGGGACAGAGTGCACCAGTGTGAGATTTGTAAGAAGTCTTACGCGAGGAAACAGACTCTGAGAGATCATATGCGTATCCATAGCAACGATAAGAGATTCGTGTGCGCGCTCTGTAGTCAGGCGTTTGTACAAAATAATAGTTTAAGTGGAGAAAATTTCTTTTCAGATGTAAAACCGCGGAAATACAAAGGCTGCGAATCGTCCTCGATGCGCAGACGGAAAAATCTACAAATATTATTCAACAGCACCACGATTATACCGTTCAAATGGCGCGGAAAATACCTCTGCTTCTATTGTAGCAAAGATATAGCCGAATATTCGACGCTACGCAAACATACGAAATCTCACGGCAACTGCTCCACGCGAGATCATTCCCTAAAAGTATTGAAAGGTGGTCAAAATATGGAAATTAAAATCGATGTTTCGGATATCACTTGCGAGATCTGTAGCGAACCGTTCCCTTCCATCGACGATATCATCACTCATTTGTTTATCAAACATAAGCTTGAGTACGACCGAGGCGTAGAAATGGCCATAGAAGAGTATAGGCTAGTCGACCTTAGTTGCTTAGTTTGCAAAGAAAAATTCGCATACTTCGGTTACTTAGTTTCCCACGTTAACAACAATCATCCAAAAAACTGTCTCATTTGCGATAAGTGTGAGCAAAAGTTTAATAAAAAACGCGATTTGTTCTCTCATATGAAAAACTACCACAGAGAAGGGGGTTATCAGTGTGAACTGTGTCCGCAGAGATTTAGTTCATTGAATATACTTCGTAAACATAGAAACAATCGTCACTTGACTCGATGTAGCATTTGTCAATTAAAATTACCTTCGGCCGCGTTGAAACAGAAACATATGGAAGTAGAGCATCCTGACGACGGATCTTTGCAGTGTGATAATTGTTTCAAAGAGTTCCACACTAAACAGGGGCTTCGAATGCATATAAGAAAGTGTAAAGGCGATGATGATCTATTCGATATAGATATAAGAAAAAAAGATTACGATCCGATGGACTTGGACCAGAACTACGAGGATCCAGTGAAGAGACCTAGCGTTAAACAGATTAGGGAGAACATAGTGATAGTCATTAACATGTCAACTGCCATACCGTTTAATTTCTATAAAAATAAATTTAATTGCTTCTATTGTTCCAAAGATTTTCCCGATTCAGATTTAATGCGTGAGCACACGATAATAGAACATCCTATATGTGACGTCAAACAGAAATGTATAAGGAAGTGTAGGGAATCTGTGGCCTGCGTCAAAATTGATATTTCGTCTCTAGCGTGTAAACTGTGTTTCGAGTCCGTGATGGACTTTGACACTATGTTAGACCATTTAGTTATAAAACATGGCGCCAACTACGACAAGTCAATCACTACCTGCTTACAACCTTACAGACTCATCAAAGATCATATGGCATGTCCTCACTGTCCAGGCGAAATATTTAGATTCTTCGGTACTTTATTAAAGCACATGAATAATAAACATACCAATAATAATATAATTTGCGTTTATTGTGGACAGACTTTTAGACGGGATCAAAATTTGCGCGTTCATATCTGGAGACATCATAGGGATGGTAGGTTCAAGTGTAACATATGTGGGGCGGAGTGCAATATACCTTCTAGATTGTACATGCACATGGCGAAAGCTCACGGCGTCAAAGCTGCCAAGTGTCCTAAATGTCCTGAGAGTTTCTCCACACAGTATCTAAGACAGAAGCACCTGATAGAGGCCCACAATTCGGGCCACAAGTGTTCGTACTGCGGTAAACTGTTCACGCGGAATTCCTTCATGAGGGACCACATTCGAAGGACACATCTCAAGGAGAAAAACGTTGAATGTTCAATTTGTAATATGAAATTTTTCAACAATATCCTTCTAAGGCGACATATGGTCAAGCATAGCGGAGAAAAGAATTTCCATTGCGAAATTTGCGGGGAACGATTCTTTTGGCGCAAAAGCCTCCGAACGCACATGTCTAGGCATAATAAACACATTAATCCAATACATATTTAG
- Protein Sequence
- MDFDEIVVKESPGLCRCCLSEGCYKDLGSEYSWMSETEIYADMLLECFDISISQHATGPNGSNRLICEVCITRLRDACNFKKQVLESEKKFVDMVGRGEFRPKVLLYQTQMKTEITMDLEEETGADDAEVEYLEEDVDFVDEDLKNEDYGEASVSEDITVSALAVKGKRGRPKKSSTAVKPEKKAKVPKLEDKPTKSKAVAKVENMSSSDSEDDVKPPLDILNAAMITTSNLLPEKSRAKYEKAYKDFLDWRINKRMTSMSENVLLAYFEELSMKFSSATLWTTYSMVKSMVNIKHQVDISKYSKLTTFLKQKAEGYQAKKAKTFSPEEIIKFLNEAPDQFYLQSKVALIFGVMGACRRQELYNLQFSDVHIVDKTIFVTVRNTKPKTDREKPPERAFTETDNKSLSATKRNRLMKGNAILVLETSTVVPFKWQRQNYLCFFCHKTFKSTDALKEHTKAEHKKSNIKAAVSYLRRDEKVKIDVSEIECRLCTQRLDDLDSLLNHLSTIHNKTFTEQSGCFGVIPYKLEGDCKLFQCAVCKKEFQYFIKLNEHMNMHFGSYICELCGKAFLSQNRLRCHVLSHGSGFRCSLCPETFDSLTMKHNHECKVHNKEKLCKCYYCDETFPNYIQRKRHHHAVHNLEIQGFNCPICHRAFEIESKMQVHVKEVHVREKNFSCNMCEQKFFSKTHVQKHMVKHFGDRVHQCEICKKSYARKQTLRDHMRIHSNDKRFVCALCSQAFVQNNSLSGENFFSDVKPRKYKGCESSSMRRRKNLQILFNSTTIIPFKWRGKYLCFYCSKDIAEYSTLRKHTKSHGNCSTRDHSLKVLKGGQNMEIKIDVSDITCEICSEPFPSIDDIITHLFIKHKLEYDRGVEMAIEEYRLVDLSCLVCKEKFAYFGYLVSHVNNNHPKNCLICDKCEQKFNKKRDLFSHMKNYHREGGYQCELCPQRFSSLNILRKHRNNRHLTRCSICQLKLPSAALKQKHMEVEHPDDGSLQCDNCFKEFHTKQGLRMHIRKCKGDDDLFDIDIRKKDYDPMDLDQNYEDPVKRPSVKQIRENIVIVINMSTAIPFNFYKNKFNCFYCSKDFPDSDLMREHTIIEHPICDVKQKCIRKCRESVACVKIDISSLACKLCFESVMDFDTMLDHLVIKHGANYDKSITTCLQPYRLIKDHMACPHCPGEIFRFFGTLLKHMNNKHTNNNIICVYCGQTFRRDQNLRVHIWRHHRDGRFKCNICGAECNIPSRLYMHMAKAHGVKAAKCPKCPESFSTQYLRQKHLIEAHNSGHKCSYCGKLFTRNSFMRDHIRRTHLKEKNVECSICNMKFFNNILLRRHMVKHSGEKNFHCEICGERFFWRKSLRTHMSRHNKHINPIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -