Talt001720.1
Basic Information
- Insect
- Tortricodes alternella
- Gene Symbol
- -
- Assembly
- GCA_947859335.1
- Location
- OX401975.1:16055183-16061390[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 6.3e-05 0.004 17.8 0.1 1 23 157 180 157 180 0.94 2 13 0.71 46 5.1 2.2 1 23 184 207 184 207 0.94 3 13 0.0045 0.29 12.0 0.0 1 23 213 236 213 236 0.96 4 13 0.00013 0.0086 16.8 1.9 1 23 242 264 242 264 0.99 5 13 0.00059 0.038 14.8 0.4 2 23 272 294 271 294 0.96 6 13 3.1e-06 0.0002 21.9 3.4 1 23 300 322 300 322 0.98 7 13 0.00018 0.011 16.4 0.3 1 23 328 350 328 350 0.98 8 13 1.5e-06 9.3e-05 23.0 1.6 1 23 355 377 355 377 0.99 9 13 5.9e-05 0.0038 17.9 2.9 1 23 383 405 383 405 0.96 10 13 1.2e-05 0.00079 20.1 1.6 1 23 411 434 411 434 0.94 11 13 1.1 69 4.5 0.7 2 23 444 462 444 462 0.77 12 13 4.5e-05 0.0029 18.3 2.0 1 23 467 489 467 489 0.98 13 13 0.00024 0.015 16.0 1.2 1 23 495 518 495 518 0.95
Sequence Information
- Coding Sequence
- ATGGCCGATATTTGGAATCTAGAAGCTTTATGTCGCTGTTGTCACGCAGATGGGCAGTTCAAAAATCTAAAAGAAGAATATGTAATTAATAACACTGTTGAAAATTATCTTAATATGTTGCTAGAAGTGTTTGGTATTAGCGTAAAGCCTCCTCCAGCAAATGCAAGCTACTCAATTTGTGACGAGTGTATCAGACAGCTCCAAAGCGCTAGTCGGTTCAAGAAACAGGTGCTGGAGTGTGAAATCAAGTTTGAAGAGTATTGCAAAAATAGTGATGATGAAAACAACAAGAAAGAGAAGACACAAGATGAGAAAGGCGTCATAGAGATATCGATCGAAGTTAAACCCAAGGTAGAGAGCAAGCCAGCCCGCAAAAGAAACAGAACGTCAGCTAAAGGCAGATCAAAAACGAAGCTCAAAGAAGAAGAATCGCTCGTAGTAAAAGTCAAAACGGAAACCGGCGAAATATTCTCCTGCAAAAATTGTGGCGTGAGTTACGAAGACTTAGACGAACTCAACCGTCACATAGCTGAGGACCATTCTAAGTTGTTCAAGTGTCTACATTGTGATGAACTGCTTAAAAGCGAGATTAAGTACAAGCAGCACAGCAGAGAAGAGCACGGTGACGCAAAACCGTTTCCATGTGAATATTGTGGCAAGAAAGTGGCAGCGAGACTGTCTTTAGTGGAACACATCAACAGTGTACACACTAAAGAAAAGTTCTTCCAGTGTGATGTGTGTCAGAAAATATTCCACAGCAAACCGGTGTTGAGGATACATTTGAGGAAACACAACGGGACATTTAGGAAATTAATTTGTGAGCAATGCGGGGTTGGGTGCAACGACAAAACGAATTTAAGACTCCACGTGATGACGGTTCACGAGAAACTAAGGCTGTTCCAATGCAAAGATTGTGGGAAACGTTTCTCCGCCGCCAAGCATTTGAAGATTCATTCGAGGAAGCATACAGGAGAACGACCTTACGAGTGTGAAATATGCCTACGTGCCTTCATGTCGAAAGATAGTTTAAGTGTCCATAAAAAGATCCATAGCAACAGCGGATATAAATGCAAAACTTGCGGGAAATCGTTCCCTACAAGAGGTCTCTACGCATCGCATTACAGAAGCCACGTTGGCAGCAAACCGTTCAAATGCCATTTATGCAGTAAAGAGTTCGCCGGCAAATATTCTCTGAACAGACATATCTTTGAACACTCCGGCGAAAGACCTTACGTATGCCCTATATGCCATAAAGACTTCAAACAAAAACCGCAGCTAGTAAGACACAATATTAGATTCCATACAGAAAAACCGGTGGTTACTAAAGAGAAATGCGAAATTTGCAAACGATCCGTCACCGATCTCGATAAGCATATGAAAGCACATACGAATAAACCTTACGCGTGTCATCTTTGCGAGAAACGCTATTCGGAACAAAACGCTTTAAATCGACATTTGCAAAGGCATACAGGCGTCAAACCGCACCCGTGCGATTTGTGCGACAAAGGGTTCATACAACTTAGGACTTTAAAGAATCACAAGTTGAAAGTCCACAAGTTGCCGTTGAAAACGGAGCAGGAAGGCCATTATGGTAGCTTCGTCACTACGTATACAATTCAGAATCTTAAAAGAGCGTTTGGATCTAAACTGTCTGATTAG
- Protein Sequence
- MADIWNLEALCRCCHADGQFKNLKEEYVINNTVENYLNMLLEVFGISVKPPPANASYSICDECIRQLQSASRFKKQVLECEIKFEEYCKNSDDENNKKEKTQDEKGVIEISIEVKPKVESKPARKRNRTSAKGRSKTKLKEEESLVVKVKTETGEIFSCKNCGVSYEDLDELNRHIAEDHSKLFKCLHCDELLKSEIKYKQHSREEHGDAKPFPCEYCGKKVAARLSLVEHINSVHTKEKFFQCDVCQKIFHSKPVLRIHLRKHNGTFRKLICEQCGVGCNDKTNLRLHVMTVHEKLRLFQCKDCGKRFSAAKHLKIHSRKHTGERPYECEICLRAFMSKDSLSVHKKIHSNSGYKCKTCGKSFPTRGLYASHYRSHVGSKPFKCHLCSKEFAGKYSLNRHIFEHSGERPYVCPICHKDFKQKPQLVRHNIRFHTEKPVVTKEKCEICKRSVTDLDKHMKAHTNKPYACHLCEKRYSEQNALNRHLQRHTGVKPHPCDLCDKGFIQLRTLKNHKLKVHKLPLKTEQEGHYGSFVTTYTIQNLKRAFGSKLSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -