Talt014445.1
Basic Information
- Insect
- Tortricodes alternella
- Gene Symbol
- -
- Assembly
- GCA_947859335.1
- Location
- OX401972.1:3008606-3017964[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.005 0.32 11.8 0.2 1 23 47 70 47 70 0.95 2 23 0.41 26 5.8 0.3 2 23 97 119 96 119 0.92 3 23 0.083 5.3 8.0 0.3 1 23 168 190 168 190 0.97 4 23 0.034 2.2 9.2 0.2 2 23 216 238 215 238 0.95 5 23 0.18 11 7.0 1.7 1 23 260 282 260 282 0.98 6 23 0.0053 0.34 11.8 5.2 1 21 286 306 286 308 0.95 7 23 0.00053 0.034 14.9 0.1 1 23 313 336 313 336 0.97 8 23 0.026 1.7 9.6 3.4 1 23 342 365 342 365 0.96 9 23 0.087 5.6 7.9 0.1 1 23 413 435 413 435 0.97 10 23 0.0061 0.39 11.6 5.1 1 23 503 525 503 525 0.95 11 23 0.00098 0.063 14.1 0.5 3 23 531 551 530 551 0.97 12 23 0.00024 0.015 16.0 0.3 1 23 559 582 559 582 0.97 13 23 0.15 9.8 7.2 0.4 1 23 588 611 588 611 0.95 14 23 8.3 5.3e+02 1.7 4.9 1 23 672 695 672 695 0.92 15 23 0.32 20 6.2 0.4 1 23 899 922 899 922 0.91 16 23 0.37 23 6.0 0.4 1 23 991 1013 991 1013 0.97 17 23 1.9e-05 0.0012 19.5 0.3 1 23 1017 1039 1017 1039 0.98 18 23 0.0003 0.019 15.7 0.2 1 23 1044 1067 1044 1067 0.95 19 23 8e-05 0.0051 17.5 0.5 2 23 1074 1096 1074 1096 0.97 20 23 0.00023 0.015 16.0 1.3 1 23 1103 1126 1103 1126 0.98 21 23 0.0065 0.41 11.5 3.2 2 23 1133 1154 1132 1154 0.96 22 23 7.8e-07 5e-05 23.8 0.4 1 23 1160 1182 1160 1182 0.99 23 23 0.025 1.6 9.6 1.1 3 23 1188 1209 1187 1209 0.97
Sequence Information
- Coding Sequence
- ATGCGCCGTCGCCGCCGCGCCAACAACGAGTTGCCGGAGGAATCCGAGACACGGATATCAAAGACAATGATGCGGAGGAACGCAATGACTCTCCTGGAGTGTTCTACCGCTTGGGCCTTCCGCTGGTTCCACAGCGCTTTCTACTGCTCGTACTGTGATGCTAAGTTTGTAGACCCAGCCCCGTTTCGTGAACACGTTCAGAACAATCATTTAAACGAACCGCCTACCAAAAAAATATTCGCTAAGTTAACTGAAAACAATATGGTTAAGATTGATATAGGGAATCTAAGCTGTCGGCTTTGCAATCATCCGTTGACGGACATAGACGATCTCAAAGATCATTTAGTGTCGTTACACGGGCCGGACGTCGCCAAGCCACCAGAAAGAGCATCGATTAAAATTAAATGGAAGCGGAAACGAAGAGTGGTAGAGGATAAAGCGAACGCCGCTCTTATTCTAGAATATTCAAATGCTGTGGTGTTTAGGTGGCAACGCGGGAAATTTATGTGCGGCTATTGCCCGGCCACTTGCGCGAGTGTTAGCGAAGTACGCACACACTCGAACGTCCATAACAACAGACTTGACGTATTCAAAAATCCTGAAGTACGGAACTCATTTCCGCTTCGCATAGACATAACTGATCTCACTTGTAATATTTGTAACGAGAAAATCAGTGAGCTGAAGGATCTAAAAATTCATTTAGCGCGATCACATTGTAAAGAATTTAATTCGGAATTTACAGATGGCGTCGTACCGTTTGTGCTTACCGGGAAAGAGTATAGATGCGTTCACTGCTCTGTACTTTTCGAGGGCTTTATGAGTCTCTTCGTCCATATGAACAAGCATTATCCAAGCTACATATGTCATACTTGCGGCAAAGGATACTCCGGCAAGCACAAATTGAGAGCGCATCAAATGTGCCACGAATCTGGGCACTTTACTTGCCCTAAATGCGATGCAGTGTTCCCAAATAGGGTGGCCAAAAACAGACATATTTCGAGCGCTCATGGGCCAAAAGAAAGATACCGCTGTCCTATTTGCGATGCCCATTTTGATTCCTACCATTCTAGGTTAAGGCATCTAGACAAAACGCACGGACAGAAAGCTGAATACCGATGGTCCGTCGACCACAAACTTAAATGGAAACCGAAGCGCAAGTATAACGATCATAGAGACAACGCGGCTATTATAATAGAGTGTTCCAACGTCTGCCCATTCAGGTGGAAGAGGGGCGCATTCACCTGCGCCTTCTGTCCTATTTCCTTTGGAGACTTTAGCGGAGTGAGGGAACACGCGCTCAAGCACCCTAACCGGGTTGAAACTATGCGCCTCGCGCGTCCGTTAGACAACGTCAAAGTAGAAATCAGCGGCCTACGCTGCGAACTCTGCCTAACACTCATAAAAGACGTTGAAACGCTTAAGGATCATTTGCTTCAAATCCACAACAAACCTATAAGCAAAGACCATAGCATCGGCATCACTCCTTTCTTAATCAACGAAAAAGATTTTCTTTGCACGCATTGCGGCGAACGCTTTGAGTTGTTCTCAAAATTGAACACGCATATGAATCACCATTATCCCAATAACATATGTTTTCAATGCGGCAAAGCGTTCTCCGCCGCTCATCGACTCAAAGCTCATTTAATGATTCACGAAGCTTCAAGTAATGTTCAATATAAATGTACGAAATGCGACGAAGTGTTCCCGACTCGGGCTCTGAAGAATAGCCACATGACAATAGCGCACGGTCCGGAGTACCGGTACAGGTGTCCTTATTGTAACGACTCGTTTTTAAGATACGCGGATAGGGCAAAACATCTGAAAATCGCGCACGGACCGAAAAATGAAGCAAACGTAAAACAGGAAGTGGTTTCGGACGCGGAGGATGTTACTGCTGTTAAGGCAGCTGCGGCCCGAGATGAGGCTGAAAAGAGACGGGCCAACTTTAGAAATAACATTTCTGCTATCATAGGCACGACTACAGCGTACCCTTTTAAGTACAGAAGAGGAATGTACCTCTGTTACTACTGTAAACACACATTCCTTGAGCCCGAAAAGCTCCGTCATCACAACAGACTTAACCATTCTGAAGTCAAGTTATTGCTTAAACCTAGAAAATACGAACCGGTAAAAGTCGATTTCGTGGGTGCCATATGTAAGCTCTGCTTAGTGGAAATAGGCGACTATCGTATGTTGAAAATGCATTTAGCCGAGCATGATAAAATTATAGACACGACCCACGGAACGATCCAAGAGAGTCATTCATCTATTATACTGAAAGACGAGGACGGCAACGACATAAAGCTTACCTTACTGAAGACACCCATACACCTAGATGACCTAGAATGTTCATATGAAGAGAACAAAATAGTAAAAAAGCTCAAGAGAACCAAATGTTGTGCATCCAAAATACAATACAAAAAGAAAGCAAAACCCGTTAAAACCTTGAAAGGCGAAGCGGCAACATTAACAGTATTAAAAGAACCGATATCACTTGATGATATACAGTGGGATAATGATATACTGGATCAGGAAGACTCAATAACGTTCAACGTGAAAACATTCCAGAGTGCATATATTTTTGGAAAATCACGCAAAAAGCTCGTTTCTGTAGAGCACAAAATGTGGAAACAAAATGCATTTACTATTTTCGCACATTCCTACGTATACCCCTTTATATATGCAAACAACAAATACAAGTGCTTTATTTGCTCTCAAGCTTTCTTAGATGCTACTTTTCTTAAGGACCACACAATTGGTAGCCACACTGTAGAAGATATAAAACTGGAATTGAGTAACAGGATTCGAGATACAAATGTTAAAGTAGATGTGAGCTGCTTACAATGCAGACTTTGCCTAGACACACTCCTAAACTTACATGATTTAAAAGTCCATTTAAAGAATCATGGGAAAAGTATTGACCCGGAGTTCAAAGATAATATAATTCCTTTTAAATTAGGAGACAAGACATTCGAGTGTCAAATTTGCATGGAAACGTTTCTAAAACTAAGATTGCTTATAATCCACATGAGCAAGCATTTCAACAACTTTAGTTGTGATATCTGTGGCTCTGTGTTCATTTCCCTTAATCTTCTCAAACGCCATTTGCAGACACACGAACAGGGAAATTTCCCGTGTGACAAATGTGACAAAGTATTCAGTAATGCCGCTAAAAGGACCTTACACGTGCGAGGCGTACACGTAAAGCAATATCCAAGAAGATGTCCCATATGCCCTGAGAGATTTAACTCTAACTATCAGAGGACAAAACACTTGCGTATCGTTCACAATCAAACCACTGGTTTATTTAGATGCGAGACTTGTGGACGAGAGTACGATCTGAAGTACCATCTCTTACTCCATATTAGGTCGGTCCACCTACAGGAGCGGAATCAAGAATGCGGCATATGCCACGCGAGATTCTTCTCCAAGTATTGCCTCTCGCGGCACATGGTTATTCACACAGGGGAGAAGAACTTCAAATGTGGTGTTTGTGGAAAAGCTTATGCGCGGAGGAAGAATTTAAGAGAGCATGCGCGCACACATGACCCTGGCGTTGCTTGTACTGTTTGTGGATTGCTCTGCTGCGACAGTACAGCGCTTATGGCTCATATCAATAGCTCTCATGGTGTGATATAA
- Protein Sequence
- MRRRRRANNELPEESETRISKTMMRRNAMTLLECSTAWAFRWFHSAFYCSYCDAKFVDPAPFREHVQNNHLNEPPTKKIFAKLTENNMVKIDIGNLSCRLCNHPLTDIDDLKDHLVSLHGPDVAKPPERASIKIKWKRKRRVVEDKANAALILEYSNAVVFRWQRGKFMCGYCPATCASVSEVRTHSNVHNNRLDVFKNPEVRNSFPLRIDITDLTCNICNEKISELKDLKIHLARSHCKEFNSEFTDGVVPFVLTGKEYRCVHCSVLFEGFMSLFVHMNKHYPSYICHTCGKGYSGKHKLRAHQMCHESGHFTCPKCDAVFPNRVAKNRHISSAHGPKERYRCPICDAHFDSYHSRLRHLDKTHGQKAEYRWSVDHKLKWKPKRKYNDHRDNAAIIIECSNVCPFRWKRGAFTCAFCPISFGDFSGVREHALKHPNRVETMRLARPLDNVKVEISGLRCELCLTLIKDVETLKDHLLQIHNKPISKDHSIGITPFLINEKDFLCTHCGERFELFSKLNTHMNHHYPNNICFQCGKAFSAAHRLKAHLMIHEASSNVQYKCTKCDEVFPTRALKNSHMTIAHGPEYRYRCPYCNDSFLRYADRAKHLKIAHGPKNEANVKQEVVSDAEDVTAVKAAAARDEAEKRRANFRNNISAIIGTTTAYPFKYRRGMYLCYYCKHTFLEPEKLRHHNRLNHSEVKLLLKPRKYEPVKVDFVGAICKLCLVEIGDYRMLKMHLAEHDKIIDTTHGTIQESHSSIILKDEDGNDIKLTLLKTPIHLDDLECSYEENKIVKKLKRTKCCASKIQYKKKAKPVKTLKGEAATLTVLKEPISLDDIQWDNDILDQEDSITFNVKTFQSAYIFGKSRKKLVSVEHKMWKQNAFTIFAHSYVYPFIYANNKYKCFICSQAFLDATFLKDHTIGSHTVEDIKLELSNRIRDTNVKVDVSCLQCRLCLDTLLNLHDLKVHLKNHGKSIDPEFKDNIIPFKLGDKTFECQICMETFLKLRLLIIHMSKHFNNFSCDICGSVFISLNLLKRHLQTHEQGNFPCDKCDKVFSNAAKRTLHVRGVHVKQYPRRCPICPERFNSNYQRTKHLRIVHNQTTGLFRCETCGREYDLKYHLLLHIRSVHLQERNQECGICHARFFSKYCLSRHMVIHTGEKNFKCGVCGKAYARRKNLREHARTHDPGVACTVCGLLCCDSTALMAHINSSHGVI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -