Talt004273.1
Basic Information
- Insect
- Tortricodes alternella
- Gene Symbol
- Zfy2
- Assembly
- GCA_947859335.1
- Location
- OX401971.1:13442594-13445171[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.1 6.7 7.7 0.8 1 23 95 117 95 117 0.94 2 18 0.00037 0.024 15.4 1.1 2 23 124 146 123 146 0.90 3 18 5.2e-05 0.0033 18.1 1.0 3 23 154 174 153 174 0.97 4 18 2.4e-05 0.0015 19.2 0.4 1 23 180 202 180 202 0.98 5 18 0.0023 0.14 12.9 1.1 1 23 208 230 208 230 0.97 6 18 0.084 5.4 8.0 0.3 2 23 237 258 236 258 0.91 7 18 0.025 1.6 9.6 0.3 1 23 264 287 264 287 0.95 8 18 0.00016 0.01 16.6 0.0 3 23 340 361 339 361 0.93 9 18 0.00019 0.012 16.3 0.4 1 23 367 389 367 389 0.97 10 18 0.0043 0.28 12.0 0.0 1 23 395 417 395 417 0.97 11 18 0.00052 0.033 14.9 0.2 1 23 422 444 422 444 0.95 12 18 1.5 98 4.0 2.5 1 23 488 509 488 509 0.87 13 18 0.0021 0.13 13.0 2.5 2 23 605 627 605 627 0.96 14 18 0.00082 0.052 14.3 0.1 1 23 633 655 633 655 0.96 15 18 8.3e-05 0.0053 17.4 0.5 2 23 662 683 661 683 0.97 16 18 0.0029 0.18 12.6 0.2 2 23 690 711 689 711 0.94 17 18 0.00028 0.018 15.8 0.2 1 23 717 739 717 739 0.96 18 18 5 3.2e+02 2.4 0.1 10 23 755 769 744 769 0.85
Sequence Information
- Coding Sequence
- ATGGCCGCCGCGAGAACCGGCGACGCGTACGACGCTTTTTATACGGCCCTGCTGAACTTCAGAAATCACTTCCTCGACGAACACGAAACGAAAGTCGCCTCCTACCCGGAGTTTACGGAGTCGAGCGACCGCGAGTCGGCCGGCGAGGCGGCCGAGGCGGGCGACGACTCGGCGGACGGGTTCGACGACCTGTCGCGCTGCAACATGCGCCGCGACCGCATGGACGAGGCGACGCGGCGCGCGCTGGCGCAGGCGCGCACGCGCGTGGACGGCAAGCTGCGCTACGCGTGCGGCACGTGCGGCAAGCGGCTCAGCTCGGCGCACACGTTCGTGTTCCACGCGCGCATCCACACGGGCGAGCGGCCGTGCGTGTGCCACGTGTGCGGCAAGCAGTTCCGCGCGCCCAATGGGCTGCAGCGGCACGTGGCCGAGACGCACGAGCGCCGGCGCCGCCGCGCCTGCCGCCTGTGCGCGCGCACCTTCGCCAACTCGCAGAACCTCAAGCAGCACCTGCGCACGCACACCGGCGAGCGGCCCTACGCCTGCGCGCTGTGCCCCAAGCGGTTCGCGCAGGCCGGCTCGCTGCACGCGCACCGCAAGACGCACAGCGCCGCGCTGCCGCACCGCTGCGCGCACTGCCCCGCCGCCTTCCGCCTGCGCGCCGGCCTCGCGCGCCACCGCCTGCGCCACTCGGGCGAGCGCCCGCACGCCTGCGCCGCCTGCGCGCGCGCCTTCTGCACGCGCGCCGACCTGCTCGCGCACCGTGCCGCGCACGCGCCCGCGCGCGCGCACGCCTGCGCGCTGTGCGCCGCCGCTTTCCGCTCGCGCCGCGCGCTGCGCCTGCACGCGCGCCGCCTGCACGCGCCGCCCGCGCCGCCCCAGCACGCCGACGCCGCCGACCGCTCAAAACCGTACCCGACACCTCAATTTGAAAATCGAATAGTAAACGTAAGCGTCGATCCGTCGGCGACGGCCGAGGCGGGGCGGGGCGCGGCGCGCGCGCAGCGGCGGCGGTACTGCGCCGCGTGCGGGCGCGCCTTCTCCGACGCGGGCAACCTGCTGCGCCACGTGCGCGCCGCGCACCTGCGGCTGCGGCGGTACGCGTGCGCGCTGTGCGCCGCCGCCTTCTCGCGCCGCGACCACCTGCGCGACCACGAGCGCACACACTCGAGCGCGCGCGAGTTCGTGTGCGCGGAGTGCGGCGCCGCGTCGCGCTCGGCCGCCGCGCTGCGCTCGCACGCGCGCGCGCACGCCCCGCCCGGCCACGCCTGCCCGCAGTGCGCCGCGCGCTTCCGCCGGCGCGCCGAGCTGCGCGCGCACGTGTCCGTGCACACGGGCGAACGCGCGCACGCGTGCGCCTGCGGCAAGGCAGGCGCGGAGCGGCGCTGCCCGCACTGCCCGGCGCGGCTGCCGGCGGCGCGCTACCAGGCGCACCTGTTCGACCGGCACGCCGAGCTGGTGTTCCACTGCGAGGACTGCGACTCGTTCGTGTCGCGGCGCATGTTCCTGATCCACATGACGACGCACGCGGCGCAGTACGACGCGCAGGACGCGGCCGAGCGCGCGCGCGCCGCGGGCCCGCCGCCGCCCGCGCCCGAGCCCCGCGGCTCGCCCGCGCCCGCGCCGGACCCCCCGCCGCCCGCGCCCGCGAGCCCGGGCTCCGACGAGTTCTCCGACCGCAGCGACGCGGAGGACGGGTTCGGGCCGCTGCCGGACTCGGTTTTCACGGCCATCGAGGACTCGCAGGAGGCCAGCCCGCCCCGCCCGGCGGAGACTCGACGCGGCAAGGCGCAGGACCGGAAGCGCGAGCGCACCTGCCCGCACTGCAACAAGACTTACCGCGCGGCATCCAGCTACTTCTATCACCTCAAGTATTTCCACAAGCAGAGCAAGGAGCACGAGTGCGGCGAGTGCGGCGCGCGCTTCGGCACGCGCGGCGCGCTGCGCGAGCACGCCTCGCGGCACACGGGCGAGCGCGCGCTGCAGTGCGCCGAGTGCGCCAAGCGGTTCCGCTCGCGCGCCTCGCTGTACATCCACCAGCAGACGCACGGAGCCGCCAAAAACTGGTCGTGCGCGGAGTGCGGGCGCGCGTTCCGCTGGCGCGCGCAGCTGCGGCGCCACTCGGCGCGCCACGCGGGCGCGCGCGCACACGCCTGCAGCGCGTGCCCGCGCGCCTTCAGCGTGCGCGCCGACCTGCTGCGGCACGCGCGCACGCACGCGCGCGGTGCGCACGCGTGCCCGATGGCGCCTTGCGCGGCGCTGTTCGCGCAGCCGCGCTACCTGCGCGTGCACCTAGCCAAGAAACACCCCGACGCGCCTCACGACGTCGCTAAACTAGCCTGA
- Protein Sequence
- MAAARTGDAYDAFYTALLNFRNHFLDEHETKVASYPEFTESSDRESAGEAAEAGDDSADGFDDLSRCNMRRDRMDEATRRALAQARTRVDGKLRYACGTCGKRLSSAHTFVFHARIHTGERPCVCHVCGKQFRAPNGLQRHVAETHERRRRRACRLCARTFANSQNLKQHLRTHTGERPYACALCPKRFAQAGSLHAHRKTHSAALPHRCAHCPAAFRLRAGLARHRLRHSGERPHACAACARAFCTRADLLAHRAAHAPARAHACALCAAAFRSRRALRLHARRLHAPPAPPQHADAADRSKPYPTPQFENRIVNVSVDPSATAEAGRGAARAQRRRYCAACGRAFSDAGNLLRHVRAAHLRLRRYACALCAAAFSRRDHLRDHERTHSSAREFVCAECGAASRSAAALRSHARAHAPPGHACPQCAARFRRRAELRAHVSVHTGERAHACACGKAGAERRCPHCPARLPAARYQAHLFDRHAELVFHCEDCDSFVSRRMFLIHMTTHAAQYDAQDAAERARAAGPPPPAPEPRGSPAPAPDPPPPAPASPGSDEFSDRSDAEDGFGPLPDSVFTAIEDSQEASPPRPAETRRGKAQDRKRERTCPHCNKTYRAASSYFYHLKYFHKQSKEHECGECGARFGTRGALREHASRHTGERALQCAECAKRFRSRASLYIHQQTHGAAKNWSCAECGRAFRWRAQLRRHSARHAGARAHACSACPRAFSVRADLLRHARTHARGAHACPMAPCAALFAQPRYLRVHLAKKHPDAPHDVAKLA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -