Basic Information

Insect: Tortricodes alternella
Gene Symbol: -
Assembly: GCA_947859335.1
Location: OX401975.1:16064894-16070247[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 6.5e-07 4.1e-05 24.1 2.8 1 23 186 208 186 208 0.98

2 14 0.00072 0.046 14.5 1.7 2 23 215 237 214 237 0.95

3 14 2e-05 0.0013 19.4 0.5 1 23 243 265 243 265 0.98

4 14 4.4e-06 0.00028 21.5 2.6 1 23 270 292 270 292 0.98

5 14 4.7e-06 0.0003 21.4 3.1 1 23 298 320 298 320 0.98

6 14 7.5e-07 4.8e-05 23.9 1.1 1 23 326 349 326 349 0.95

7 14 8.8e-06 0.00056 20.5 0.7 1 23 355 377 355 377 0.98

8 14 8e-06 0.00051 20.6 0.9 1 23 383 405 383 405 0.98

9 14 0.0015 0.093 13.5 1.8 1 23 411 433 411 433 0.99

10 14 9.5e-08 6e-06 26.7 0.4 1 23 439 461 439 461 0.98

11 14 3.1e-07 2e-05 25.1 1.3 1 23 467 489 467 489 0.98

12 14 0.068 4.3 8.3 2.9 1 23 495 514 495 514 0.95

13 14 2.9e-06 0.00019 22.0 3.7 1 23 520 542 520 542 0.98

14 14 0.0031 0.2 12.5 2.8 1 20 548 567 548 569 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	6.5e-07	4.1e-05	24.1	2.8	1	23	186	208	186	208	0.98
2	14	0.00072	0.046	14.5	1.7	2	23	215	237	214	237	0.95
3	14	2e-05	0.0013	19.4	0.5	1	23	243	265	243	265	0.98
4	14	4.4e-06	0.00028	21.5	2.6	1	23	270	292	270	292	0.98
5	14	4.7e-06	0.0003	21.4	3.1	1	23	298	320	298	320	0.98
6	14	7.5e-07	4.8e-05	23.9	1.1	1	23	326	349	326	349	0.95
7	14	8.8e-06	0.00056	20.5	0.7	1	23	355	377	355	377	0.98
8	14	8e-06	0.00051	20.6	0.9	1	23	383	405	383	405	0.98
9	14	0.0015	0.093	13.5	1.8	1	23	411	433	411	433	0.99
10	14	9.5e-08	6e-06	26.7	0.4	1	23	439	461	439	461	0.98
11	14	3.1e-07	2e-05	25.1	1.3	1	23	467	489	467	489	0.98
12	14	0.068	4.3	8.3	2.9	1	23	495	514	495	514	0.95
13	14	2.9e-06	0.00019	22.0	3.7	1	23	520	542	520	542	0.98
14	14	0.0031	0.2	12.5	2.8	1	20	548	567	548	569	0.94

Sequence Information

Coding Sequence: ATGTGTGATTTGTGGAATAAGAACAGCCTGTGCCGCTGTTGCCATGCGGAAGGTGGCTTCAGAAGTCTCGGAGAGCCTTATATTCACGAAGGAACTCAGGAAATTTATACAGAGATGTTACGAGACAGTTTAAACATAGTTATGAATCTCTCGAATCTCTCCCTGGGCAACTGCATATGCGAAAGCTGTGTGCGAAGGCTTCGAGATGCAACACTGTTCAGACAGCAGGTGCTGGCTTGTGAGAGAACTCTGATTGAACTCCACGGCCACGTCACTATTGATGGAGTCAACTTGAATCCTGAAATCAAGTCGGAAGATGATAGTTGCTCGAATGGTTCCACAGATGAGACATGTCCACAGAAATTTGGCTACAAAGAAGTATTGGACATAAAAGTTGATGGTAATACGGTGACTTCAGTAGATGTGTTTATACCCCTGGATGTAGACGACCAGCCCCTGTCGAGTCTTCGGTCAAGACGGTCATCAACACCTGACGCCGACTGGACGAAGCCAAGACATGAGGAGGAGAAAGCAACGAAAATCAAAAGCAAGCGATTCTGCTGCGAAATATGTCAAAAGAAATTCTCATACAACGGCTCTCTAGAAGTACACATGCGGACTCATACAGGCGAGAGAACTATAGAATGTcatctgtgcaatggcaaatataccaacaacaaggaacttaaccggcacataacctcaaatcattcagacggaggaaaatttccatgcaccatgtgtccggagagttttgagaaggcgagactgttaaagaaacatctgacgacgcatttcgagcagaaattctcctgtagctactgcgataaggagttccaaaggaaaaaaggcttgaaggaacacttgaaaacgcacacgggagaaaggaaattcacttgtcagatttgtaacaagtcgtttgggcataatcaaactttgaagtctcatattctgactcatacgggggagaagccctatgtttgtgatgtgtgcggcaggagattcccacagcggactcatttgaaacggcatatatttatcatacacaccggagtcaaaccgtacagctgtccggtttgcaagaagctgttctccagtaaaagttacctggcgatacacgaacggcagcataccggtgagaaacctttctcctgtgatgtttgtaataaaaatttcacagcgtacacaactctgaaagttcacatgcgggttcacacaggattgaaaccgtactcttgcagtttttgcagcaggcaattcgctcaaatggccagtttcaaactacatgaacgtactcataccggtgagaaaccgtacgcttgtaaaatatgcaagaaacctttctcggataatggttatctcaaaattcatatgcgagtgcacacaggtgaaaaaccgtattcttgtgagatttgcaagcggtcgtttagggaaactggacagttgaaacggcatatgagagttcacacaggcattaaaccgtatacttgtaaaatatgtaacaagcaaataggaaacttgtcgaaacacatgcgagtgcactctgatgagagggcgtacaactgtaatgtatgtaggaagcagttttctaagaacgaccatttgagattgcatatgagaatacattctggtgagaaaccgttttcatgcgaatcttgtagcacccagtttactcaaagcagcggtttgaagaggcataaatgtttacaagcggaaaaTGCTGACTGA
Protein Sequence: MCDLWNKNSLCRCCHAEGGFRSLGEPYIHEGTQEIYTEMLRDSLNIVMNLSNLSLGNCICESCVRRLRDATLFRQQVLACERTLIELHGHVTIDGVNLNPEIKSEDDSCSNGSTDETCPQKFGYKEVLDIKVDGNTVTSVDVFIPLDVDDQPLSSLRSRRSSTPDADWTKPRHEEEKATKIKSKRFCCEICQKKFSYNGSLEVHMRTHTGERTIECHLCNGKYTNNKELNRHITSNHSDGGKFPCTMCPESFEKARLLKKHLTTHFEQKFSCSYCDKEFQRKKGLKEHLKTHTGERKFTCQICNKSFGHNQTLKSHILTHTGEKPYVCDVCGRRFPQRTHLKRHIFIIHTGVKPYSCPVCKKLFSSKSYLAIHERQHTGEKPFSCDVCNKNFTAYTTLKVHMRVHTGLKPYSCSFCSRQFAQMASFKLHERTHTGEKPYACKICKKPFSDNGYLKIHMRVHTGEKPYSCEICKRSFRETGQLKRHMRVHTGIKPYTCKICNKQIGNLSKHMRVHSDERAYNCNVCRKQFSKNDHLRLHMRIHSGEKPFSCESCSTQFTQSSGLKRHKCLQAENAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -