Talt014468.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Tortricodes alternella
Gene Symbol
-
Assembly
GCA_947859335.1
Location
OX401972.1:3249224-3268179[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.0024 0.15 12.8 2.5 1 23 367 390 367 390 0.97
2 20 6.5e-06 0.00042 20.9 2.9 1 23 396 419 396 419 0.95
3 20 3e-06 0.00019 22.0 6.2 1 23 545 567 545 567 0.98
4 20 2.8e-05 0.0018 18.9 1.3 3 23 575 595 573 595 0.98
5 20 0.00016 0.01 16.6 6.0 1 23 601 623 601 623 0.98
6 20 0.00069 0.044 14.6 0.3 1 23 629 652 629 652 0.95
7 20 6.2e-05 0.004 17.8 1.1 1 23 658 681 658 681 0.94
8 20 3.5 2.2e+02 2.9 0.4 10 23 808 821 805 821 0.85
9 20 0.0047 0.3 11.9 3.0 1 23 826 847 826 847 0.97
10 20 1.3e-05 0.0008 20.0 1.3 3 23 856 876 855 876 0.98
11 20 3.4e-06 0.00022 21.8 2.4 1 23 882 904 882 904 0.97
12 20 0.0023 0.15 12.9 3.9 1 23 910 933 910 933 0.96
13 20 0.0014 0.092 13.6 0.4 1 23 938 960 938 960 0.98
14 20 0.00081 0.052 14.3 1.7 1 23 966 988 966 988 0.96
15 20 0.00014 0.0089 16.7 2.2 1 23 994 1016 994 1016 0.95
16 20 8.6e-07 5.5e-05 23.7 1.1 1 23 1022 1044 1022 1044 0.98
17 20 8.7e-05 0.0055 17.4 1.0 1 23 1049 1071 1049 1071 0.98
18 20 8.9e-05 0.0057 17.4 6.0 1 23 1076 1098 1076 1098 0.98
19 20 1.1e-05 0.00069 20.2 0.8 1 23 1104 1127 1104 1127 0.97
20 20 1.3e-05 0.00083 20.0 3.0 1 23 1133 1156 1133 1156 0.95

Sequence Information

Coding Sequence
ATGCCGCGTAGAAGAAGGCAATCCGCTAGTGCTTTGGAAGACGAGGACACTGGCGCGAGTACCAACGTCACGATGACCCGGGACACGTTCGCGTCTTTAATTACGTCGATACAACAATCCAACGCTGCATTGTGTGATCGCATGTTCGATCGTCTGGCAAACTTGTCAGCGTCAACTCCCGTCCAGCCGGAGGGCACGCCGCCCCCGCTGAGTACCTATTCAACGGGAGAAAGAACCgAGTTGCTAACAAAAGCTAGAACCATTGAGGAATCCATTGAAGAATCACTAAGGAGAGAATCGCAAAACGCGGCATCCATTGCTCCGCGGACAAGGCGCATCGTATCGGAAGGAACTACACAGCCCGAAATGTACGCCGCGCGTGGATCGAGCGTCGCATCGAGCGCGGAAACGCTCCGGCTAGCAACAGCGTTTGCAGCGCCGCCACACGAGGGCGCCGTGTTCGCGCCGTCCCGCGCGTCGCAGGCGCGCGCCGCCGCCACGCCGGCGCGATCCGCCCGACTTCCCGTTGTCGTCGCTAGCGACGGCGACTCTCCGACGGCAACGCGAGAACGAGACGACTGCGTGACGTCGAAGCCGCCGCGAGCGTTTTGTATTTACTGCAAACGCTATGGACACCTACGTGACCAGTGCCGTAAGTTGGCGGGAAAGGGCAAGGCAGGCATGTCGCCAGAAAGTGTCATTGTAAAAGAAGAGGAGCAGGAACTCTCGTGGGAGGGCGGCGGGAGCATGAAGTGCCGGCGAGTGAAGGAGGAAGGCGGTGCGGACTTTTACAAAGAGAACGCGTTCAAATACGAGCTGGTGCTGACCCCGGAGCGCCTGGAGCCGCAGGAAGACATCGCGCATGCAGAGACATCTAATGAAGTGGAGGAAGATGCTAAATTGTGCGCTACAGCTGGTAGTGCTGATGGAGTCCTGGAGTGCTCAGAGTTTCCACCACCAGACCTATGCTCTGGTGATAGGGAGCAGTCAAGCCCTTGCGTTGTCAAGCATGAGCGCCCGCTCAATACGCAACGACACACTTGCCTGACTAAACCGCATCTCACTGAACACATGTTACTCCACACTGGAGTTAAACCGTTCTCTTGTGAGATATGCAACCGGCAGTTCGCCAGGAAACGGAATGTAACCTGCCATATGAAAGTGGTCCACTCGAATGAGAAGCCGTTCTGCTGTGATGTATGTGGAAGACGGTTTAATAGAAAAGATAACCTCACTGCCCATAGAACAAAAATTCATGGCATAAAGAAGAATGTGGTACAGGAGAATGAGGACAACCGCGAGCTGGTGCTGGACCCCGAGCAGTTGCAGCCGCAGGATGTCGCCGTCGCGTCTCCAGGAATATCTGAGGGAGCAGAGAGGGATGCAGCATTCTCCTCTGCAGCTGGAAGCGATGCTGAAGACCTGGAGGGCTCGGAGTTTCCAGAAGACCCCTGCTCTGGTGACAGCCACATCGAGCAGTTAAGGCCTTGTGTTGTGAAGCTGCGCAAAATGCTGATATCCGATGTAGCAGACAGAGATGCAACATTGAATGCTGCAGCTGGGAGCGACGATGAAGACCTGGAGTGCTCGGAGCTTCCACCAGAAGATCCTTGCCATAGCGGGGTAAAGGTTTTCACCTGCCACGTATGCCAAAAGCAGTTTACGAATAAAGATCATCTCGTTCGCCATCTGAGAAGCCACACCGGAGAGAGACCTTATGGATGTGACATTTGCAACAAGCACTTTGCTGAAAGTGGGACGTTGAAAAAACATCAACGAATCCACTCGGGCGAGAAACCGTTCTCTTGCAAGATTTGTCCGAAACAATTCAGACAAGTATGTCATTTAAGAATACACACCAGAACTCACACGGGCGAGAAACCGTTCTCTTGTGAGATATGCAAAATGCAATTTGCCAGGAAACGGGCTGTAACAAGTCATATGAATGCGGTCCACTCGGGTGAGAAGCCATTCTGCTGCGATGCATGTGGAAAGCGGTTTAATAGAAGTGATAACCTTGCTGCCCATAAGGCGAAGGTTCATGGTCAAGAACCTGTATCTAGAGTTTGTAATGAGGAGTTTGCGGTGAAGGAGGAGATCAGCGAGCTGGTGCTGGGCCCGGAGCTGCTGCAGCAGGGTGTTGCAGGAACATCTGAGGGAGCAGAGGGGGATGCAGCATTGTCCTCTGCAGCTGGAAGCGGTGCTGAAGACCTGGAGGGCTCGGAGTTTCCAGAACACCCCTGGTCTGGTGACAGCCACAGGGAACAGTTAAAGCCCTGTGTAGTGAAGCTGGAGTGCATGCCGGATATAGAACCACAGCCTTGTCAGCAAAGCCCTTGTGAAGAAAATGATGCAGACATCAAACCCGAACCATGTTCGACAGATTATGAATCTTTCCTGCGTAAAACTTACGGATTAAGCATAACCTCAAAAATTACTTTAATACATCATATCCGAAGCCACAACGTTAAACTCTTTAACTGCAACATATGCCAAAAGAAGTATACGAGCAAAGATATATTTCGCCATATGAAAAGCCACACTAGAGAGAAAGAGAAACCGTTCTGTGACATTTGTAAAAAGCAGTTCGCTGATAAATGGACGTTGAGGAAGCACCAACGGATTCACACTGATGAGAGACCGTTTGCCTGCGAAACCTGTCCGAAACGATTCAGACAAGCCAGTCATTTGAAAGGCCACACCAGAACTCACACAGGCGAGAAGCGGTTCACTTGTGATATATGTAAAATGCAGTTATCGAGGAAATATCATCTCGTTCATCATATACAACAACTGCACAGGAACGAAACGTATTCCTGTGAAATCTGCAATGACAGATTTGTTACAAAAAAACTTCTATCGGAACATGAACGTATTCATATGAGGAATGATCGCTTCGCCTGCGATTTGTGCAGCAAACACTTTGCACATAAAGTGTCTCTCGCTGCTCACAGAGGAACTCACACGGGTACCAGAGGATTTCTGTGTGATATTTGTTCAAAACTTTTCACTTATAGAAGCCAATTAACCATCCATAAACGAAAGCACACAGGAGAGAAACCTTACGCCTGTGAAATATGCCGAAAGAGTTTCTCCCACAGAGCTAACCTAAAAGAACATATAAACATACATACGGGCAAGAAATTTACATGTGATATATGTCAAAAGCAATTTGCCAAGAAGCAGAATCTCGTTTTGCATGTAAAAAATCATATGGGCAAAACGTACACTTGCAAGATGTGCAAAAAGCACTTTAACAGTAAACCACACCTCAGAGAGCATATGCTACTCCATACTGGCATTAAACCGTTCTCTTGTGAGATATGCAACCGGCAGTTCGCCAGGAAACGGAATGTCACCAGCCACATGAAAGTGGTCCACTCGAATGAGAAGCCGTTTTGCTGTGATGTATGTGGACGACGTTTTAATAGAAAAGATAACCTCACTGCCCATAAGACTAAAATTCATGGAAATAATTAG
Protein Sequence
MPRRRRQSASALEDEDTGASTNVTMTRDTFASLITSIQQSNAALCDRMFDRLANLSASTPVQPEGTPPPLSTYSTGERTELLTKARTIEESIEESLRRESQNAASIAPRTRRIVSEGTTQPEMYAARGSSVASSAETLRLATAFAAPPHEGAVFAPSRASQARAAATPARSARLPVVVASDGDSPTATRERDDCVTSKPPRAFCIYCKRYGHLRDQCRKLAGKGKAGMSPESVIVKEEEQELSWEGGGSMKCRRVKEEGGADFYKENAFKYELVLTPERLEPQEDIAHAETSNEVEEDAKLCATAGSADGVLECSEFPPPDLCSGDREQSSPCVVKHERPLNTQRHTCLTKPHLTEHMLLHTGVKPFSCEICNRQFARKRNVTCHMKVVHSNEKPFCCDVCGRRFNRKDNLTAHRTKIHGIKKNVVQENEDNRELVLDPEQLQPQDVAVASPGISEGAERDAAFSSAAGSDAEDLEGSEFPEDPCSGDSHIEQLRPCVVKLRKMLISDVADRDATLNAAAGSDDEDLECSELPPEDPCHSGVKVFTCHVCQKQFTNKDHLVRHLRSHTGERPYGCDICNKHFAESGTLKKHQRIHSGEKPFSCKICPKQFRQVCHLRIHTRTHTGEKPFSCEICKMQFARKRAVTSHMNAVHSGEKPFCCDACGKRFNRSDNLAAHKAKVHGQEPVSRVCNEEFAVKEEISELVLGPELLQQGVAGTSEGAEGDAALSSAAGSGAEDLEGSEFPEHPWSGDSHREQLKPCVVKLECMPDIEPQPCQQSPCEENDADIKPEPCSTDYESFLRKTYGLSITSKITLIHHIRSHNVKLFNCNICQKKYTSKDIFRHMKSHTREKEKPFCDICKKQFADKWTLRKHQRIHTDERPFACETCPKRFRQASHLKGHTRTHTGEKRFTCDICKMQLSRKYHLVHHIQQLHRNETYSCEICNDRFVTKKLLSEHERIHMRNDRFACDLCSKHFAHKVSLAAHRGTHTGTRGFLCDICSKLFTYRSQLTIHKRKHTGEKPYACEICRKSFSHRANLKEHINIHTGKKFTCDICQKQFAKKQNLVLHVKNHMGKTYTCKMCKKHFNSKPHLREHMLLHTGIKPFSCEICNRQFARKRNVTSHMKVVHSNEKPFCCDVCGRRFNRKDNLTAHKTKIHGNN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-