Talt014680.1
Basic Information
- Insect
- Tortricodes alternella
- Gene Symbol
- -
- Assembly
- GCA_947859335.1
- Location
- OX401972.1:6758177-6761967[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 30 0.0015 0.094 13.5 0.3 1 23 50 72 50 72 0.98 2 30 0.32 21 6.2 0.3 3 23 101 122 99 122 0.92 3 30 0.027 1.7 9.6 0.8 2 23 143 165 142 165 0.94 4 30 0.0018 0.12 13.2 4.2 2 23 171 193 170 193 0.96 5 30 0.022 1.4 9.8 0.6 1 23 198 221 198 221 0.94 6 30 0.00021 0.014 16.2 1.7 2 23 224 246 223 246 0.96 7 30 0.0089 0.57 11.1 4.7 1 23 327 350 327 350 0.97 8 30 0.097 6.2 7.8 0.7 2 23 378 400 377 400 0.94 9 30 0.00015 0.0096 16.6 0.3 1 23 422 445 422 445 0.93 10 30 1.8e-06 0.00012 22.7 0.5 3 23 452 473 450 473 0.95 11 30 0.00021 0.014 16.2 0.8 1 23 479 502 479 502 0.96 12 30 8e-05 0.0051 17.5 0.1 3 23 509 530 508 530 0.97 13 30 0.00022 0.014 16.1 4.3 1 23 534 557 534 557 0.97 14 30 0.022 1.4 9.8 0.4 2 23 564 585 563 585 0.96 15 30 1.5 95 4.1 1.1 1 10 591 600 591 604 0.95 16 30 0.013 0.8 10.6 2.8 1 23 645 667 645 667 0.96 17 30 2.6 1.6e+02 3.3 0.2 2 23 695 717 694 717 0.93 18 30 0.0047 0.3 11.9 0.6 1 23 737 760 737 760 0.96 19 30 0.00021 0.013 16.2 0.2 1 23 765 788 765 788 0.94 20 30 0.00045 0.029 15.1 2.0 1 23 793 816 793 816 0.98 21 30 6.5e-05 0.0041 17.8 2.4 2 23 819 841 819 841 0.96 22 30 4.4 2.8e+02 2.6 1.2 2 21 848 867 847 868 0.90 23 30 0.0039 0.25 12.2 1.6 1 23 925 948 925 948 0.97 24 30 0.041 2.6 9.0 0.2 3 23 1022 1044 1020 1044 0.89 25 30 7.6e-05 0.0048 17.6 0.3 3 23 1051 1072 1050 1072 0.94 26 30 0.003 0.19 12.6 3.6 2 23 1077 1099 1076 1099 0.93 27 30 0.00072 0.046 14.5 3.4 1 23 1104 1127 1104 1127 0.98 28 30 7.1e-06 0.00045 20.8 5.0 1 23 1131 1154 1131 1154 0.97 29 30 0.00051 0.032 15.0 0.3 2 23 1161 1182 1160 1182 0.96 30 30 1.4e-05 0.00091 19.9 0.4 1 23 1188 1210 1188 1210 0.98
Sequence Information
- Coding Sequence
- ATGACCTTCTCCTTCTACAGAAAAGTCAATTTCTTTTCAGATGAAATTGGATTGAAAAACGTGAAAAGCGCCAATTATCGCAAGAGAAGAAATCTGCAAGTAATTTTCAACAACACTTCGGTGATACCGTTCAAATGGCGGCAGAAATACATGTGTTTTTATTGTGGCGAGGACTTGGCGGATTATGATATGTTGAGAAAGCACACGAGAGCGCATGGCGCGTGTTCGCTCTCAGATCGAGCGCTCAGCCGCGTCTCGGGCACCGATATTGAAATCAAAGTAGACGTCTCCGTCACTATTTGCGAAATATGTGACGATTCGTTTACCGACTTCGAGGACATAATCACTCATTTAATTCATAAACACAACTTGCCATACGATAAACACTCTGATCTTCTTATAATGAAGTACAGATTAGCCGACCTCAAATGTTTATTATGCGAAGAAAGTTTTAACCACTTCGGCAAACTTATCGTCCATGTAAACAACAACCATCCCATGAAGTTTCTTTCGTGTGATGTGTGCCATCAGAAATTTAACAAGCATAGGGATTTAAATGCTCACCTTAGATCTTACCACAAGAAGGAAGGATACAATTGCACTCAATGCGCAATCAGTTTTCCTACTAATTGGGCGCTTAGCAATCACAAATTCAAATCACATTCTTCTGTTTGTAACATCTGTTTCAAAAGCTTTTCTTCTTCAGACAAGCGATTAAAACATATGAAGTCAGAGCACATTGATGATGGGTTCTTACATTGTGGGTTTTGTCTTAAAATAATGAACACTAAACAAGGATTTTTGAGACACGCGGCCCATTGCACTTCTAAAAGTGATTCCAAAAATCAACATATCATCGACGAAGTGGTCTCTATCGACGACAGCGACAGGAAACCCAACGTCAAACAGATTAGGAATAATATAGCTTGCATACTTAACATGTCTACAGCTATACCCTTTAAGCATTTCATGAATAAATTTAGATGTTTCTATTGCACTAAACATTTTATAGAATGCGACGATCTCAAAGAACACACCATGATCGAGCATCCGCATTGCGACTCCAAGTTCAAATCCATGAGATTACGCAATAGGGACGATATCTCCATCAAAATAGATACATCTTCTCTATCTTGTAAGATTTGTTTCGAAACAATGAACGATTTGGATCATCTTATAAACCACCTTACCTCTGAACATAAAACGCGATACGATAAATCAGTAGAAATAAACGTCCAACCTTTCAAGTTGATAAAGGATAACTTTGCTTGTCCGTTTTGCGGCGAGTTCTTTAGGTATTTTAGCACTTTACTAAGACATATAAGTGGAGCTCACACGGACAACAAAACTATATGCATGTATTGCGGGAAATCGTTTAGGACGAAACCGAATTTGCGAGCGCATATAGCGCGCCGACACAAAGTAGGGAACATTTATAAATGCGTAACTTGTAAATTAGAATTTACAAGAAAAATTGAGCTGCGTACACACATGGGCAGAGTTCATGGCAACAAAATGGTAGACTGTCCGGAATGTCCGGAGAAATTCATATCTCAGTACTCGATGCAGAGGCATCTGATCACCGTGCATGCGTCCGGGCACAAATGTTCCTACTGCGGCAAACTGTTCACAAGAAACTCCTTCATGGATAATCACATTAGACGAACGCATTTAAAAGAGAAAAACGTCCAGTGCTCTCTGTGCAACGACAGATTTTTCGATTCGGCGCTACTTAAAATGCATATGGTGAAGCATATAGGGGAGCGGAACTTCCACTGCGACGTTTGCGGAAAGAAGTTTCTGTGGAAGAAAAACCTCCGCGATGAATATCCGCACTGCGCGTACGACAGCTGTACCTCTCAGCGGAGGAGGAAAAATTTGCAAATATTGTTCAATAACACCTCGGTGATGCCTTTCAAATGGCGCGGGACGTATCTTTGTTTCTACTGTGGGAAAAACTATACAGAGTACCTGGAGTTCAGAAAGCACACGAAATCGCACGGGCTCTGTTCTACGAACGACTATTCCCTGAAAATTATTAAAGGGAACCATATAGAAATAAAGGTTGACGTCTCTGAGATTGTTTGCGAGATCTGCTGCGAACCCTTTAACAGATTTGATGAAGTCGTCGACCATTTGAACTTGAAACACGATCTTAGATACGATTGTAGCATAGAAATCCCATTCCAATTATACAGATTAGTAGATTTCCGATGCTTGCTATGTGACGAACAATTTACGTACTTTGGCTACTTGGTAAAACACGTTAATAATGTACACCCACAGAACTGTTTCATTTGTGATGACTGTGGGCTTACGTTTAATAAGAAGAGGGACCTCGCACTTCACGCCAGAGACAATCATCGCCAAGAAGGATACTCCTGCGATCAGTGTGCAGGGAACTTTAAAACTAGAAGTATGTTGCGGAAACATCAAAATACTTTCCACTTTAGGAAATGTAAAGACTGTTCCTTAACTTTCGCATCCCATAGCCTTTTACAAAAACATATGCAGTTAGATCACCCGGATGACGGTAGTCTAAAATGTATTTACTGTTCCAAGGAGTTGCATTCTAAGCAGGGCTTGAAGCAACACCTCAATAAATGCGAAGTGAGACTGCTGTCACAGATTGACGCGCCTAAAGCGAACAGCGCATTTCTCGAGGATACATACATAGAGCCCAAAAAGAAACAGAACATACTGCAAATACGTCAAAACATCCAATGCGTGCTCAACATGTCCACTGCGATACCGTTTAAATTCTTCTCAAAATATTCATGTTTTTATTGTTCCAAAAAGTTTATTGAATTTGAAGATCTTAAAGAACACACGCTGAGAGAGCATCCGGTGTGCGATGTTAAATCTAAATGCATGAAGAAATGTAAGGGGGAGAGGATTAGCGTCAAGATCGACGTTGCTGCTTTGGCTTGCAAGATATGTTGTCAACCTTCTGATGACTTGGACACTCTAATAGAACATCTCATAGCAGATCATAAGGCCAACTACGACAAAACAATGAAACGCTGTTTCGAACCGTTTAGGATAATAAAAGACAACATGCCTTGCCCGTTATGTGCTGATCGCACTTTCAGGTACTTTAGCACACTTCTCAGACATATTAATTCCGAACACAGCAACAACAACAGAATATGCGACTTCTGCGGACGCAGTTTTAAAAACGTCACAAATCTTAAAGTTCACATTACATACGCGCATACGGGCTCTTGCGAGTGCGACGTATGTGGCCTTAAATTCAAGAACCAATGGTGCCTAGCGCGGCATAAAGCTAAAACCCACAACGCTAAAGACTACAAATGTCCTAAATGTCCGGAGCAATTCCAATCCCAATACCACAAGCAGAAGCATCTGATAACAACTCACGACATCGGTCACAAATGCAGCTACTGCGGTAAAATGTTCACTAGAAACTCTTTCATGAAGGATCACATACGTAGAACGCATTTGAAGGAAAAGAACGTGCCTTGCTCGGTTTGCAACGAGAAGTTTTTCGATAACTATCTCCTTCGCATGCACATGGTAAAGCATGAAGGAGAGAGGAAATTTAGCTGCGAGGTGTGCGGAAAAGCTTTCTTGCGGCGGAGTAATCTCAGTTCTCATATGGACATGCACAAGAAATACGGGCATGTCCAGATTTAG
- Protein Sequence
- MTFSFYRKVNFFSDEIGLKNVKSANYRKRRNLQVIFNNTSVIPFKWRQKYMCFYCGEDLADYDMLRKHTRAHGACSLSDRALSRVSGTDIEIKVDVSVTICEICDDSFTDFEDIITHLIHKHNLPYDKHSDLLIMKYRLADLKCLLCEESFNHFGKLIVHVNNNHPMKFLSCDVCHQKFNKHRDLNAHLRSYHKKEGYNCTQCAISFPTNWALSNHKFKSHSSVCNICFKSFSSSDKRLKHMKSEHIDDGFLHCGFCLKIMNTKQGFLRHAAHCTSKSDSKNQHIIDEVVSIDDSDRKPNVKQIRNNIACILNMSTAIPFKHFMNKFRCFYCTKHFIECDDLKEHTMIEHPHCDSKFKSMRLRNRDDISIKIDTSSLSCKICFETMNDLDHLINHLTSEHKTRYDKSVEINVQPFKLIKDNFACPFCGEFFRYFSTLLRHISGAHTDNKTICMYCGKSFRTKPNLRAHIARRHKVGNIYKCVTCKLEFTRKIELRTHMGRVHGNKMVDCPECPEKFISQYSMQRHLITVHASGHKCSYCGKLFTRNSFMDNHIRRTHLKEKNVQCSLCNDRFFDSALLKMHMVKHIGERNFHCDVCGKKFLWKKNLRDEYPHCAYDSCTSQRRRKNLQILFNNTSVMPFKWRGTYLCFYCGKNYTEYLEFRKHTKSHGLCSTNDYSLKIIKGNHIEIKVDVSEIVCEICCEPFNRFDEVVDHLNLKHDLRYDCSIEIPFQLYRLVDFRCLLCDEQFTYFGYLVKHVNNVHPQNCFICDDCGLTFNKKRDLALHARDNHRQEGYSCDQCAGNFKTRSMLRKHQNTFHFRKCKDCSLTFASHSLLQKHMQLDHPDDGSLKCIYCSKELHSKQGLKQHLNKCEVRLLSQIDAPKANSAFLEDTYIEPKKKQNILQIRQNIQCVLNMSTAIPFKFFSKYSCFYCSKKFIEFEDLKEHTLREHPVCDVKSKCMKKCKGERISVKIDVAALACKICCQPSDDLDTLIEHLIADHKANYDKTMKRCFEPFRIIKDNMPCPLCADRTFRYFSTLLRHINSEHSNNNRICDFCGRSFKNVTNLKVHITYAHTGSCECDVCGLKFKNQWCLARHKAKTHNAKDYKCPKCPEQFQSQYHKQKHLITTHDIGHKCSYCGKMFTRNSFMKDHIRRTHLKEKNVPCSVCNEKFFDNYLLRMHMVKHEGERKFSCEVCGKAFLRRSNLSSHMDMHKKYGHVQI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00342408;
- 90% Identity
- iTF_00342408;
- 80% Identity
- -