Talt001808.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Tortricodes alternella
Gene Symbol
-
Assembly
GCA_947859335.1
Location
OX401975.1:18088460-18099249[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.0004 0.026 15.3 0.2 3 23 87 107 85 107 0.97
2 20 0.00021 0.013 16.2 2.7 3 23 115 135 113 135 0.96
3 20 1.3e-06 8.1e-05 23.2 3.0 1 23 141 163 141 163 0.96
4 20 0.0064 0.41 11.5 6.6 1 23 169 191 169 191 0.98
5 20 3.3e-05 0.0021 18.7 1.8 3 23 215 235 213 235 0.96
6 20 6.8e-06 0.00044 20.9 1.3 1 23 241 263 241 263 0.97
7 20 3.6e-06 0.00023 21.7 2.1 2 23 269 290 269 290 0.97
8 20 3.1e-05 0.0019 18.8 1.1 1 23 296 318 296 318 0.98
9 20 1.9e-05 0.0012 19.4 1.6 1 23 324 347 324 347 0.98
10 20 3.5e-06 0.00022 21.8 2.2 2 23 513 534 512 534 0.97
11 20 3e-05 0.0019 18.9 2.4 3 23 542 562 541 562 0.98
12 20 1.2e-06 7.8e-05 23.2 1.2 1 23 568 590 568 590 0.98
13 20 1.3e-05 0.00085 19.9 1.6 1 23 596 618 596 618 0.98
14 20 5.3e-06 0.00034 21.2 1.6 1 23 624 646 624 646 0.98
15 20 1.3e-05 0.00086 19.9 2.6 1 23 652 674 652 674 0.98
16 20 8.5e-06 0.00054 20.6 1.9 1 23 680 702 680 702 0.95
17 20 8.9e-06 0.00057 20.5 4.7 1 23 708 730 708 730 0.97
18 20 0.0068 0.43 11.4 1.7 3 23 750 770 748 770 0.96
19 20 4.5e-05 0.0029 18.3 0.1 1 23 776 798 776 798 0.97
20 20 0.0044 0.28 12.0 0.2 1 23 804 826 804 826 0.96

Sequence Information

Coding Sequence
ATGTCTTGCGGTTATTTACTATTGAAGTACGAATCAGAATGTGGTAGACCAGAAGGCCTAAGTGCCATGAAGGAACCTGAGTACAGTAGTAACACGCCAGAAGCGTCCTCAGTCAATAAAATCAAGAAGGAATCAAACGTTATTGTTAGCAGTTTTGACGTCAAAGCGGGAACGTCTGAAATTAATGAAGACGCCAGCGCTAAAGATGACAACAACCTGGGCTTCCCGGTGCAGCAGGGCTCACACAAAAGATGGGCGTGCCGCATTTGTGGTAAGACTTCCTGGTCGCCGGCGCACCTGCGCATCCACATGCGCGTGCACACCGGCGAGAAGCCGTCGTGCTGCCACGTGTGCGGCGCGCGCTTCCGCACCGACGGCAACCTCGCGCGCCACGTGCGCCAGCACACCGGCGAGAAGCCGCACGCCTGCGACCACTGCGGCAAGAGATTCACACAAAAGTCCGTACTCGTAAAACACATTAGAATCCACACGGGAGAAACTCCGTTCTCTTGCAATATATGCCATAAGCAGTTCTCACGAAGCTTCACTTTAGCTTGCCACCGGAGAGTCCACGGTGATAAATATGTCAAGGAAGAAAAAATTACTATACCAAAGCCTCCCACTATCCCAGAATCTTGGGCATGTGATGTTTGCAACAAAACGTTTAAGAACAAATCTTACAGGCACGCACATATGCAAATACATACGCGTGTAAAGCCGTTCACGTGTGACGTGTGCGAGAAACAATTCTCAACTTCTGAGAATCTTGAGAAACATGCCCATGTTCATTATGAGAAAGTGAGAACGTGCAGCGAGTGTAATAAGGAATTTAAAACTCATGCGAATCTGCTCAGGCATATGCTGGTTCATACTGGCGAAAGGCCCTTTAGTTGTAGTTTTTGTGGCAATAGATTTACACAGAAAAGTGTTCTGATAAAGCATGTGCGTATTCATACAGGAGAAATGCCGTATTCATGTGAAATATGCTTGAAGAAGTTCTCACGGAGCTTCACTTTGGAGAATCACCTTAAGAGAATACATAAAAAGGGTGAAAAAACTGAACTAGAGGAATATCAAAGTGAGAAAGTTAGTGACAAAGAAAAAGTAAAATATGAAGAAGAGATAAATAAAGAAGAAGAAGAGAAAGCAAGTGATATAAACAGTGAGACGGATTTGAAGCCATATTGGTGTGAGAATTGTGATAATTGGTACGCTAGTAGTAAACAGTTTTATGAACATGAGTGTGTGCAAGAGGATAGACCGAAAATTAGCAATATTTGTGATGAGAATGATCTTGATAATGATATTAGTGACAATGAACCTTTGGATACCCATAATGGTGTACATGCGTCGTTTATAGATGAAAAAATAGAAGATAGTAATCATGAAAATAATAAAGATGAAATGGAAGCAACAGCCCCAATTAAAGATGTCGATGAAGTTGAAATAAAAGAGCGATTAGCAAATAAAGAAACGGCGTCAATAGACAATGAAAGAAAAAAAGATAAGTCAAAACATCGCAAATCAAAAAGCTGGTCGTGTAAACTCTGCGAAAAGAAATTCAAAACGAAATCATATTACCAAGCGCATATCAAAACCCACGAAGGGGCTAAACCTGGTTTCTGTGAAATTTGCGAGAAGCATTTCAATACCAACGGGAATTTGATCCGGCACAAACTTACGCATTCAGGAGAGAAACCATTCGTCTGCGAATATTGCAATAAACGGTTCACCCAGAAAAGCGTTTTGATAAAACACGAGAGAATTCACACAGGAGAAATGCCGTATTCGTGTGAGATATGCAACAAGCGATTCGCGCGTAGCTTCACGCTGCTCAACCACAAGAAAGTCCACAGCGAAGTTAAACCGTACTCCTGCAAATTTTGCGAGAAATCTTTCACTCAACGGAGCGCTTTGATGATCCATGAAAGAAACCATACTGGGGAGCGACCGTTCTCGTGCAAGATCTGCAGCAAAAAGTTCACCAGTAACAGTACGTTGAGTAGTCACAGCAGGATTCATAGCGAGCATAAGCAGTTTTTGTGTGATATTTGCTACAAGCAGTTTACTTCAAGCAGCAACTTCTATAGTCACATGAGGATCCATGCTGGTGATAGAAGGCATTCATGTGACATTTGTCAGAAGAAGTTTTACACGAACAGCAGTTTGACAAAACATAAGCGAGTGCATACGCAGAAGGTATGTAAAGTGGAAGTGCGCGAAGAAGACAGCAGCAAGCAGTTCGGGTGCAGCGCGTGCGCGCGGCGCTTCGCGAGCTGCTACCTGCTGCAGCGGCACGCGCGCACGCACTCCGGGGAGCGCCCGTTCCCCTGCGACCAGTGCGATAGGAGGTTCGCGCTGAGCGGCGACCTGGCGCGGCACCGGCGCGCGCACGGCGGCGAGAAGCGCTTCGCGTGCGACGCGTGCGCCGCGCGCTTCACGCGCCGCGTCGCGCTGCGCAACCATCGGCGCCTGCACGCGCGTCTGGACGGGACAGCGGAGATGGATTTCAACGAACGAGTTCCGAAATTCATATTAAATAAAAATAAATGA
Protein Sequence
MSCGYLLLKYESECGRPEGLSAMKEPEYSSNTPEASSVNKIKKESNVIVSSFDVKAGTSEINEDASAKDDNNLGFPVQQGSHKRWACRICGKTSWSPAHLRIHMRVHTGEKPSCCHVCGARFRTDGNLARHVRQHTGEKPHACDHCGKRFTQKSVLVKHIRIHTGETPFSCNICHKQFSRSFTLACHRRVHGDKYVKEEKITIPKPPTIPESWACDVCNKTFKNKSYRHAHMQIHTRVKPFTCDVCEKQFSTSENLEKHAHVHYEKVRTCSECNKEFKTHANLLRHMLVHTGERPFSCSFCGNRFTQKSVLIKHVRIHTGEMPYSCEICLKKFSRSFTLENHLKRIHKKGEKTELEEYQSEKVSDKEKVKYEEEINKEEEEKASDINSETDLKPYWCENCDNWYASSKQFYEHECVQEDRPKISNICDENDLDNDISDNEPLDTHNGVHASFIDEKIEDSNHENNKDEMEATAPIKDVDEVEIKERLANKETASIDNERKKDKSKHRKSKSWSCKLCEKKFKTKSYYQAHIKTHEGAKPGFCEICEKHFNTNGNLIRHKLTHSGEKPFVCEYCNKRFTQKSVLIKHERIHTGEMPYSCEICNKRFARSFTLLNHKKVHSEVKPYSCKFCEKSFTQRSALMIHERNHTGERPFSCKICSKKFTSNSTLSSHSRIHSEHKQFLCDICYKQFTSSSNFYSHMRIHAGDRRHSCDICQKKFYTNSSLTKHKRVHTQKVCKVEVREEDSSKQFGCSACARRFASCYLLQRHARTHSGERPFPCDQCDRRFALSGDLARHRRAHGGEKRFACDACAARFTRRVALRNHRRLHARLDGTAEMDFNERVPKFILNKNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-