Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.0021 3.4 8.1 0.6 10 43 21 52 14 53 0.78

2 7 0.03 47 4.4 1.8 14 30 52 69 44 79 0.69

3 7 7.3e-06 0.012 16.0 0.6 14 44 94 126 88 126 0.91

4 7 1.8 2.9e+03 -1.3 0.2 18 23 151 156 149 161 0.88

5 7 0.081 1.3e+02 3.0 0.3 6 26 168 188 163 201 0.78

6 7 0.00024 0.38 11.1 4.7 13 32 203 221 193 230 0.80

7 7 0.032 51 4.3 1.4 13 44 231 259 225 259 0.84

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.0021	3.4	8.1	0.6	10	43	21	52	14	53	0.78
2	7	0.03	47	4.4	1.8	14	30	52	69	44	79	0.69
3	7	7.3e-06	0.012	16.0	0.6	14	44	94	126	88	126	0.91
4	7	1.8	2.9e+03	-1.3	0.2	18	23	151	156	149	161	0.88
5	7	0.081	1.3e+02	3.0	0.3	6	26	168	188	163	201	0.78
6	7	0.00024	0.38	11.1	4.7	13	32	203	221	193	230	0.80
7	7	0.032	51	4.3	1.4	13	44	231	259	225	259	0.84

Coding Sequence: ATGATTTCAGATTTATCGCTTGAGCTGGATCACGCAGATCTCCCCTCTTATGTAACTACTGCCCCTGACGGCGATGGCAAGAAACTATTCTGCCGCCTGTGCAACAGAGTGATCAGGAACGCCAAATTCATGAAACGCCACATTCTCTTCAATCACACCAGCGTCAAATGTCCTATATGCGATGAGGAGTTCGAAACATCATTCAAGAGAACACGTCATCTTCTCAAAGAACACAATATGGAAGAAGTCGGAAAAGGACTGGTGAAAAGGCTCATTGAGAAAAGGAAGTTCTCCTGTGACTTCTGCAAGAAACAGTATGCCGAAAAAAGAATTCTGCAGTCTCATATATTTTCCATGCACATGATATCGAAATGTCCAGATTGTCCATCCATGTTCACGGGGAAGCAAATGTCCATACATCGGAACGATGTCCACGGTACTCCTATACCTACTTGCGGAATTTGCGGCTACAGGAATAATATAGAAAGGCGTGTGTTACTCCATCAGCGGCAAGTCCATCTTAAAGAGAAAACCGTGCCTTGTCAGTTGTGTGATATGACTTTTTTTAGCAGGATATTCTTGAAGCGGCACCTTATAATGCATAAGCCGGATAAGATACACGAGTGTTCTTACTGCCATAAGAAGTATGCAAGGAAGAATACGCTGCGTATGCACGAGAAGATTCACAGGGGGGAGAAGAATAAGGTGTGCGCGGTGTGCGGGGAGCGGTTTGTGCAGAAGGCCAGTCTCAATTATCACATGGTGAAGCACCATCCTGACGCGTGTTGA
Protein Sequence: MISDLSLELDHADLPSYVTTAPDGDGKKLFCRLCNRVIRNAKFMKRHILFNHTSVKCPICDEEFETSFKRTRHLLKEHNMEEVGKGLVKRLIEKRKFSCDFCKKQYAEKRILQSHIFSMHMISKCPDCPSMFTGKQMSIHRNDVHGTPIPTCGICGYRNNIERRVLLHQRQVHLKEKTVPCQLCDMTFFSRIFLKRHLIMHKPDKIHECSYCHKKYARKNTLRMHEKIHRGEKNKVCAVCGERFVQKASLNYHMVKHHPDAC

Sequence clustering based on sequence similarity using MMseqs2