Talt006466.1
Basic Information
- Insect
- Tortricodes alternella
- Gene Symbol
- -
- Assembly
- GCA_947859335.1
- Location
- OX401988.1:9518419-9521376[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.5e-09 1.3e-06 28.3 0.0 3 41 24 63 22 65 0.91
Sequence Information
- Coding Sequence
- ATGGCCAAAATAACGCGAAAAAAAAGCCGAAGACGTGTTGGTGCGCGACCGTACAAAAACTACTCAAAAGAGATGTTAGACTTGGCGGTACAATATATAAAAGAAAAAAAAATGTCTTCAAGGGAAGCCGAACGCCAGTTCGGCATACCGCGGCGCACGTTATTGAACAAACAAAAAGAGAATCACCCAAAAAATGTAGGAAAACCTACATTGTTATTCGAGGAAGAAGAGGAAAACATTGTGAAAGTAATAGTTGCAGCAGCGGACTTTGGTTGTCCTCTAACGAAGCTGGATTTAAGGCTGGTAGTCTATGATTATTTAAAAAAGAATGGTCGTGACGCAATCTTTAACAATCAACCTCCCGGAAAGCAATGGGTTGAATGTTTCATGGAAAGGCATGAATCAAAACTGACAACAAGAAGCTGTCAAAATATAAAATTGGCTAGAGCGGAGAAAACAGTGGACGAATTCCTGAAATATTTTAATAATTTGGAAGAGACCCTTAAAGATATTCCTTCATCACATATATTAAATTTGGATGAAACCAATTTGAACGATGATCCTGGCGCATCCAAATGCATTTTTAGAAGAGGAGTGAAATATCCAGAGCGAGTTTTGAACTCCACAAAAGGTGCTATATCATTGATGTTTACAGCAACAGCTGCTGGTCAGGTTTTACCTACTTATGTGGTGTACAAAGCTGTATCTCTTTATTCTGAATGGATTTCTGGGGGCCCCCGAGATACGCGCTATAATCGAACAGCGTCAGGATGGTTCGATACTGCCGTTTTTGAAGATTATTTCAAGACAATTGTCGTACCATGGGCAGACAGTTTACCTGGAAAAAAGGTGGTTATTTGTGACAATTTATCCAGTCATCTCAATGTCACAGTCATTCAGCTTTGCGAGGAACACAATATATCTTTCATATTTATACCCACGAACTCCACACATCTTACACAGCCTCTAGATGTATCTTTTTTTGCGCCCCTAAAAAAGGCTTGGCGAAAAGTCCTACTTGAATATAAAATGGAAAATCCTAATCAAACCGCACTTAATAAAAATCATTTCCCAAAAATGTTGACAAATTTGATTAATAGTATAAAACTGAAAGAGGCCAATATCATCCAAAGTGGATTCAAAGCCACCGGAATATATCCATTAAACCCACGTCAAGTTCTTCAGCGCCTTCCTGAGTTTGCTGACAATATTGAAAATTATAGTATAGATTCTGCATTACTGAATTATTTAAAAAAGGTGCGACAACCGAAGCCAGTCTCTGTAAGTCGTAATAAAAAAGTGACCGTGGAACCAGGAAAATCAGTAACGATTGATGATTTCTATCATATTCTAACAGAGAAAGAAGCAGCTGCTGCAAATAGGATATCACAGAAAAAAAAGAATACGGGAGTGAAGAAAAACAAAAATAAAAAGAAACAACAAAAGAAAAATAATGAAAATGAACAAGAGTTGTCGCTCAATGACGCTGACGAATTTATAGCAAGTGATGGTGCAAGTGATGGTAAAATGATAAATAGCATTGATCATAACAACTGTTCTGATATTTTTCCAGAAGAAAACTGTTTGATCGATGACTTTTTTAGACAAGATGTCTTAACCAAACTTCTCGACTTAAAAGACACTACCGAAAATCACAACACAGAAATTACAAACAAAGAATTAAAAGAGAACTACGAAGAAATCGGTGCTTACCTGTCAGACACTGAAACGATGAGTATTATAAAAACAGACCAGAATAATGAAATGAGTATTTTGGACGAAGTTACAGGAAAAATTATAAAATCATCTTGTCAAGGAAAACCAATAGGTCCAACAAGTTTGGCTCCACCAAGTTTGTCTGTTCTTTGTACGAAAAATATCAACAATTTTTCGGGCTCCGCTATACAAGAATCTTTTGAACAGTCATCAAATGTATGCATGTTAAGTAAATTTTCTAAGAAAAAAGACGTTCAAAACATGGCATTTAGGGCAAATACTCAAAATGACGTACCGTCATGTTTAAAACCAGGTACAATATCGGACACCCAAAAGTCAGAAAACTCTTTGACAAAAAAAAAAAAAATCTCTACTGAAAAGGTAAATTTTGACAAGATAACATGTCCCAAAAAACTCAACAAAATTAAAAAAAATCTAAGCGGAGCAGAATTTGTAAGACACTCAGCTTTGCAGATGAAATTGGCTCCAATGAAAAAACGAAAAGGAGTAAAACATGAAGTTAACATTTATAAAAAAAAAACTAATGATGAACCGAGTATATCAATTGACGCAACCAGAAAACGTAAACGAAATGATTCAAAAAATTCAGAGAGTGAAAGACTTCAGAATAAAGTGACAGAATGCAAAATTTTAGGAAAAGATGATACTACAAGTAAAGAAAGACCAGAAGCAAGCAATAAGGTAACGAAGCGTGAAGAAAAGGCAAAATCAAAGAAGAGGGCTGTAAAAAAGAAGGGAAACTTTAAAATGGAAACAAGCTCCGAAATTTCAGATACTATGAGCATAGCAAACACAGAAGATTCATTTGATGGAACATTTGATGAATATTTCACAGCTTTTTTTGAAGAACAAAACGGGAAAGAAAATATGGATCCAGAATCGGATGTTGTACCATTTGGGTGCAGTGACATTCTATACTGCGCAGACAACAACTTCAATAAAGATGATTGGGTTGTTGCCAAGTTTGCAACGAAGAAAAGTCTAAAACACTATGTCGGACGCATTTTAAGCGTGACTAACAGTATTCCTACAGTCAAATTTTTAAGGAAAGTTAAAAATTCGAAAAATTCAAAAGGATTAGTTTTTACTTACCCAGACCTAGATGATGTATGCGAAATGCACCACCCAGATGATATTCTTCTGATTCTACCTAAACCAAATATTTCTCGGCGCGGACAAATAATTTTTAATATAGATTTAAGTGATTACAACATTCAATAA
- Protein Sequence
- MAKITRKKSRRRVGARPYKNYSKEMLDLAVQYIKEKKMSSREAERQFGIPRRTLLNKQKENHPKNVGKPTLLFEEEEENIVKVIVAAADFGCPLTKLDLRLVVYDYLKKNGRDAIFNNQPPGKQWVECFMERHESKLTTRSCQNIKLARAEKTVDEFLKYFNNLEETLKDIPSSHILNLDETNLNDDPGASKCIFRRGVKYPERVLNSTKGAISLMFTATAAGQVLPTYVVYKAVSLYSEWISGGPRDTRYNRTASGWFDTAVFEDYFKTIVVPWADSLPGKKVVICDNLSSHLNVTVIQLCEEHNISFIFIPTNSTHLTQPLDVSFFAPLKKAWRKVLLEYKMENPNQTALNKNHFPKMLTNLINSIKLKEANIIQSGFKATGIYPLNPRQVLQRLPEFADNIENYSIDSALLNYLKKVRQPKPVSVSRNKKVTVEPGKSVTIDDFYHILTEKEAAAANRISQKKKNTGVKKNKNKKKQQKKNNENEQELSLNDADEFIASDGASDGKMINSIDHNNCSDIFPEENCLIDDFFRQDVLTKLLDLKDTTENHNTEITNKELKENYEEIGAYLSDTETMSIIKTDQNNEMSILDEVTGKIIKSSCQGKPIGPTSLAPPSLSVLCTKNINNFSGSAIQESFEQSSNVCMLSKFSKKKDVQNMAFRANTQNDVPSCLKPGTISDTQKSENSLTKKKKISTEKVNFDKITCPKKLNKIKKNLSGAEFVRHSALQMKLAPMKKRKGVKHEVNIYKKKTNDEPSISIDATRKRKRNDSKNSESERLQNKVTECKILGKDDTTSKERPEASNKVTKREEKAKSKKRAVKKKGNFKMETSSEISDTMSIANTEDSFDGTFDEYFTAFFEEQNGKENMDPESDVVPFGCSDILYCADNNFNKDDWVVAKFATKKSLKHYVGRILSVTNSIPTVKFLRKVKNSKNSKGLVFTYPDLDDVCEMHHPDDILLILPKPNISRRGQIIFNIDLSDYNIQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00895854;
- 90% Identity
- iTF_01463189; iTF_01463190;
- 80% Identity
- -