Talt001898.1
Basic Information
- Insect
- Tortricodes alternella
- Gene Symbol
- -
- Assembly
- GCA_947859335.1
- Location
- OX401982.1:861812-865977[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.3e-11 4.6e-08 33.0 0.0 2 37 19 53 18 59 0.94
Sequence Information
- Coding Sequence
- ATGCCTCGTAAATACATCCGATCTGTAGGAAAAAGACGCTATGCATTTTATAGTAAAGACCAACTAAAATTGGCCTTAGAAGCTGTACAGCGAGGGTCATCTATAAGAGATGCAGCACAAAAATATGGCGTGACACGTTCAACTCTTTGCAGGCACAAGCTCAATCAAAATACAGGCAAATATGGCCGTCCGCCTGTGTTCAATGAAGCAGAGGAATGCACTATCGCAGAGTGTGTTAGTTTGGCTGGAGATTGGGGTTTTCCTTTAACCAAATATGATATTCGTTGCTTGGTAAAAGCACATCTAGACAGGAGAGGGATTACAGAACCGAGATTCAAAAATAATTTCCCAGGGCCCGATTGGACAACATGCTTTATGAAAAGACATGAGCACAGGCTCACCGACCGCTTATGTCAAAACATTAAAAGAGCAAGAGCTGCCGTTAACGAAGAGACAATCAACGAATATTTCGACGAGTTGGAAAACTCCTTGAAAGACGTTGACCCTGAATTGATCGTCAACTACGATGAAACGAATTTGACCGATGATCCCAAAAGAGTAAGAGTCGTGGTCAGACGATCATGTCGACACCCAGAAAAGGTCTTAGATAGCTCGAAGTCCAGTACTTCCGTCATGTTTAGCGGTGCTGGTAATGGGAACATGTTGCCTGTGTATATTAATTACAAGGCTGAACGTCTGTATGATACATGGACAGCAGGTGGTCCACATGCAGCCCAATACAACCGCACGAAAAGTGGTTGGTTTACAATGGAAATATTTGAGGACTGGTTCAAAACAATTGCCGTACCATATTTCCGAAAATTTGATAAAGAGAAGCCGAAAGTCCTTATCGGTGATAATCTATCCAGCCATATTTCAAAATGGGTATTAGACAAATGTGTCGAGGAAAACATTAGATTTATTTTGTTGCCGGCAAACAGCACCGGTTTGTGTCAGCCACTTGACGTGGCTTTCTTTAAACCATTGAAGACAAAATGGAGTCAGATTTTGACGCAATGGAAACTGAAGAATAGAGGCGTTATACCCAAAGACACGTTCCCACGACTTCTAAAAAAATGTCTGGAAGAAATGAGTGACAAAACAGCAGACAATTTGAGGGCTGGATTTAGAGGATCTGGATTGATTCCTGTGAATAGAAGTGAAGTTCTCATAAGGCTACCTAAGGTTCAGTCACAATCCACAACTAGTGGTACTAATGCTAATGATACACAACAGTGGGTGGACACGTTCAAAGAATTCTTGCAGGAGTCTAGGTCAAAAGAAAGTGTGCCAGAGCGACAAGTACACAAGAAAACTTTGCAAGTAAAGCCAGGTGTAAGTGTAATAAACGCAGAACAACGTGAAGCGGAAATTCAAGAAATAATAAAATCTTGTAAAAATAATAAGCCTTCACAAAAGAATAAGAAACGAGTGATATTAGACTCTGAAACCGACACCGATGCTAGTATGTCTTTTCGAGAATCAGATTGCGATCTTGATATTCTAGAAGACGATGATATGGAATTGGACTTGTCAGTATTTAAAAGCTTCTCGCCAGATCCATTACGAGTTAGTAAGTCAGATGTCTTTAAAAATATGCCTAGCACATCCAAAGATACATTGGCCGTTGAGTCTTCTGATATGGTAGCAAAAAATATGCCTAGCACATCTAAGAAAGCATTGGCCGTTAATAAGTCTTCAGATATAGCAAAAAATATGCTAGGCACTGCAAAACAATATATTTTTTCATCTAAAAAGGATCAATCAGGACAGAAGAACTCGCCGATTGCCACAAGATATACAAACGAAGACTTTGTTGTTGTAAAATTTGTGTATAACGCTGGCACAAAGAAAGCTCTGGAGAAAAAATTTATAGGAAAAGTTATAAATGACCTGGAAGAGGAGGAGTGTATTTTTGTAAAATTTATGAGGAAATCTGGGAAGGCAGACGACACTTTTATATATCCTCAAGTGGATGACGAGCAGTTAGTGCAAACAAAAGATGTTATCTTAACAGAATCGTCTGCCACGCTGGAGCAGTGCGAGCGCGATGTTCGCGAGCGCCCGCGTGCCCGGGTGGCCCGCTCTGCTTCGTCTCAGGAGCGCCAACACCAGGAAGGCCATCCACAGCTCGACCAACATCCTAGTCGTGGAGACGAGAGAGTGGGATGCCGCCAGCCCCCTTCACAGAAAGTGGAGGGAGTACCACAAACCGGTCACCGCACGATGGAAATGACCTGGTAG
- Protein Sequence
- MPRKYIRSVGKRRYAFYSKDQLKLALEAVQRGSSIRDAAQKYGVTRSTLCRHKLNQNTGKYGRPPVFNEAEECTIAECVSLAGDWGFPLTKYDIRCLVKAHLDRRGITEPRFKNNFPGPDWTTCFMKRHEHRLTDRLCQNIKRARAAVNEETINEYFDELENSLKDVDPELIVNYDETNLTDDPKRVRVVVRRSCRHPEKVLDSSKSSTSVMFSGAGNGNMLPVYINYKAERLYDTWTAGGPHAAQYNRTKSGWFTMEIFEDWFKTIAVPYFRKFDKEKPKVLIGDNLSSHISKWVLDKCVEENIRFILLPANSTGLCQPLDVAFFKPLKTKWSQILTQWKLKNRGVIPKDTFPRLLKKCLEEMSDKTADNLRAGFRGSGLIPVNRSEVLIRLPKVQSQSTTSGTNANDTQQWVDTFKEFLQESRSKESVPERQVHKKTLQVKPGVSVINAEQREAEIQEIIKSCKNNKPSQKNKKRVILDSETDTDASMSFRESDCDLDILEDDDMELDLSVFKSFSPDPLRVSKSDVFKNMPSTSKDTLAVESSDMVAKNMPSTSKKALAVNKSSDIAKNMLGTAKQYIFSSKKDQSGQKNSPIATRYTNEDFVVVKFVYNAGTKKALEKKFIGKVINDLEEEECIFVKFMRKSGKADDTFIYPQVDDEQLVQTKDVILTESSATLEQCERDVRERPRARVARSASSQERQHQEGHPQLDQHPSRGDERVGCRQPPSQKVEGVPQTGHRTMEMTW
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00009942;
- 90% Identity
- -
- 80% Identity
- -