Talt003268.1
Basic Information
- Insect
- Tortricodes alternella
- Gene Symbol
- -
- Assembly
- GCA_947859335.1
- Location
- OX401980.1:12829531-12835082[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.2e-07 0.00011 22.2 0.0 1 37 185 221 185 229 0.89 2 2 2.4e-10 2.1e-07 30.9 0.0 1 40 237 276 237 277 0.94
Sequence Information
- Coding Sequence
- ATGTGTCAGAAACAAAATATTATATATGTATACTTTTCAAATCGGCCGACGTTCCACACTTCAGCGATGGGCGCGCGCATCATGAACCACAAGGGGCACCAGTACACGCGGCACTCCGTGTGCTCGTCGCGCGTCAAGTGGCTGTGCTCCGAGAGCCGCACCACCAAGTGCCACGCCATAGCGGTCACCATCGGCTGCAGGGTCGTCGACTATCACAACAAGCACAGCCATCCGCCCCATACGATCATCATGCATTATGCATTCATAACAGAAGACGCAAACAACAAGCGATTTGTGTATATAAACGGGTATAGATTCAGTTTGCAGAGCCACTCTCAGATCGGCGGGAGATGGCGCTGCGTTCGGCACTGGGCCGGCTGCCGCGCAGCCGTATACGTCGACCAACTGACCGTCGTCAAGACAGTCAACAAGCACTGCCACAGCACGGAAAAGAAGAAGAAAGCTTTTACCCGGAAAATCATGTTAAACGGATATGTTACAGTTGGTACAAACAAAATAAGAAAACCCCGGTTCAGACGGGGCACGTCCTGGACTCCAGAGACCATGTTAGCAGCATTGCAAGAGTACCAAGATGGCGGCGGGACTCAGACGGCCATCGCCAGGAGGTACGGAATTCCCCAGAAGACATTTCAGAGACCTAAGCCAAAACACGCAAGTGCACCCCGGCTCAATCGAGGCATCACCTGGACCCCGGAGATCATGGCAGCGGCCTTGCAGGAGTACCGAAACGGCGGCGGGACCCAAGTAGCCGTCGCCAGGAAGTATGGAATTCCTCAGCAGACATTCCAGAGACATGTGACGAGGAAAGAATGA
- Protein Sequence
- MCQKQNIIYVYFSNRPTFHTSAMGARIMNHKGHQYTRHSVCSSRVKWLCSESRTTKCHAIAVTIGCRVVDYHNKHSHPPHTIIMHYAFITEDANNKRFVYINGYRFSLQSHSQIGGRWRCVRHWAGCRAAVYVDQLTVVKTVNKHCHSTEKKKKAFTRKIMLNGYVTVGTNKIRKPRFRRGTSWTPETMLAALQEYQDGGGTQTAIARRYGIPQKTFQRPKPKHASAPRLNRGITWTPEIMAAALQEYRNGGGTQVAVARKYGIPQQTFQRHVTRKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -