Basic Information

Insect: Topomyia yanbarensis
Gene Symbol: stc_1
Assembly: GCA_030247195.1
Location: CM058069.1:365592757-365594823[+]

Transcription Factor Domain

TF Family: zf-NF-X1
Domain: zf-NF-X1 domain
PFAM: PF01422
TF Group: Zinc-Coordinating Group
Description: This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 1.2 4.7e+04 -3.4 1.1 15 18 417 420 416 421 0.80

2 7 0.058 2.2e+03 0.8 0.3 4 10 477 483 476 483 0.95

3 7 2.7e-05 1 11.5 20.0 1 18 489 505 489 506 0.97

4 7 0.62 2.4e+04 -2.5 0.6 6 10 532 536 531 536 0.87

5 7 7.8e-09 0.0003 22.8 14.3 1 19 542 560 542 560 0.97

6 7 1.4e-09 5.4e-05 25.2 12.5 1 18 600 617 600 618 0.98

7 7 6e-07 0.023 16.7 9.2 1 18 654 671 654 672 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	1.2	4.7e+04	-3.4	1.1	15	18	417	420	416	421	0.80
2	7	0.058	2.2e+03	0.8	0.3	4	10	477	483	476	483	0.95
3	7	2.7e-05	1	11.5	20.0	1	18	489	505	489	506	0.97
4	7	0.62	2.4e+04	-2.5	0.6	6	10	532	536	531	536	0.87
5	7	7.8e-09	0.0003	22.8	14.3	1	19	542	560	542	560	0.97
6	7	1.4e-09	5.4e-05	25.2	12.5	1	18	600	617	600	618	0.98
7	7	6e-07	0.023	16.7	9.2	1	18	654	671	654	672	0.97

Sequence Information

Coding Sequence: ATGGCAAGCGCTGGAGAGGGCTCGTCTTCTTATAACTGGAATCCAGCCGGAAATATCGCTTTTGAGAGTTTTCTTTCACAACTCGCGCAAGTCTCAATTCATGCTCCTCACAACTCTGGAAACGAGTCTCGCAGTGTAGGAATAGTTTCTGGAGCGGTTCGAAGACAGTATAATAGACAGAACTGGAATAACAACCAAAGAAGAAACCGCAACGGATTCCGGAATGGCAGCAATCAAGAACGAAACGATCCCCCCTTAGAGAGGAACAACCGAACATTACAACATCAGCATCCTCAGCAAAATTTACGGTTTACTTCACAAGCCTCAAATCAGGGGACATCTAATCAAGGCACCTCTAACAGACACGGAAGTGAAGGAATAGTTTCGGGAGCGGTTCGAAAGAAACAGAATAATAACCGAAGAAATAACCGCAACAGGGCCCAGTACGGATTCCTCACGATACCAAAACGGGAACGGAACGATACCGGAGGAGAGACTAATGTGAGCAGCATGCAGGGATTATCGCAACACCAGCAGCATCCACAGCAAAATTTTAGTTCGCAAATGACCACACAAACCCCGATTCAGAGGACATCTAATGAAGGTAACTCCAATAGCTATGGGAACGAGTATCATAACGAAGGAATGACCTTGGGACCGGTTCCAAGGAAACGAAATAACCGAAAAAACAATCGCAATCGACGCCAAAATGGATTTAACAGAAACCGGGGACAGAACGATGCCGGGCAAGAAAGTATTGTTGACAGAAATATCGATGCTCCTAATAATAATCCAAGGGATACCCAAATATCACATCATACAATTCCGCAAAATGTTACTTCGCAGTTAACGACACAGGCCTTAACCCAGGAAACATCTCATGGAAGCGCTACCCATAGCCACGAAAGTGGAGAGATAGCTACAGGAGCGGTTAAAAAGAAAACGAATAATAACCAACGAAATAACCAAGGCAACGCGCTCCATAATGCAGGAGATGAGAATAACGTTATAGATACATCACAACAGCAGAAAAATGGAAGAGACACTCAAGGCAACAATGCAcgcgaaaaaaagaaaaaacaaatgCAGAACAAATCAAAACTAAATCGTGCTCGACGTAAAAAACAGGCGGAAATGATAACTTCAAAGTGTTCACAGCGAGAGAAACTCATCCGAGAGCTAAACTCTTCCAAGCTGGAATGTCTTATTTGCTGTGATTTGGTACACCCGAATCAACCCATCTGGTCCTGTCCGAAGTGTTACCATATTCTGCACCTGCAATGCAACACTGAGTGGGCCAGCAGTTCAGTTTCGTATGCAGGTTGGCATTGTGCAGCTTGTCGAAATATTTCAAGGATTATCCCTCGAGAATACTACTGCTTTTGCGGTAAGAAACAAAATCCTCAGTTCAACAGAAACTTTGTGGCGCACTCTTGCGGTGAGCTCTGTAATCGTAAAATGCCTTGCGGTCATGTTTGCACTTCAAAGTGTCATCCAGGTCCTTGTACACCGTGCCATGAGATAGTTTTGAGTCAGTGCGGCTGTGGCAAAGACACATTTCTGATGGAATGTAACCAGACACTTGATTTTTCCTGCCAGGCAATCTGCGATAAATTTTTGGATTGTGGGGATCACACTTGTCAGCAAGTGTGTCACGGTGGTGCCTGTCAACGATGCAAGGTAACCGTAAAACGTCTGTGTAATTGCTCAAAAAAATTAGTGAGCGTAGTTTGCGGCAATTGGCGTTCATACTTAGGGGGCTACCGTTGTGAAACAGCTTGTGGCGCACTACTCAGTTGCGGCCGTCATAAATGTGCCGAGGTTTGTCACTTAGGGCCATGTGGAGAATGTGCCCCAGCACTTCGCtgtttttgtggaaaaatgaactTATCTTGCATAAACACTCGCGTATACCTAGAGGGCTACAGTTGTGGAGCAGTTTGTGACCGACTACTCAGTTGCGGCCGTCATAAATGTGCCAAGTTTTGTCACCGGGTACCTTGTGGAAAATGTTACTGGATATGTGAAGTTACTTCGATAGATGGATTAAGGAATATGTTTACCTAG
Protein Sequence: MASAGEGSSSYNWNPAGNIAFESFLSQLAQVSIHAPHNSGNESRSVGIVSGAVRRQYNRQNWNNNQRRNRNGFRNGSNQERNDPPLERNNRTLQHQHPQQNLRFTSQASNQGTSNQGTSNRHGSEGIVSGAVRKKQNNNRRNNRNRAQYGFLTIPKRERNDTGGETNVSSMQGLSQHQQHPQQNFSSQMTTQTPIQRTSNEGNSNSYGNEYHNEGMTLGPVPRKRNNRKNNRNRRQNGFNRNRGQNDAGQESIVDRNIDAPNNNPRDTQISHHTIPQNVTSQLTTQALTQETSHGSATHSHESGEIATGAVKKKTNNNQRNNQGNALHNAGDENNVIDTSQQQKNGRDTQGNNAREKKKKQMQNKSKLNRARRKKQAEMITSKCSQREKLIRELNSSKLECLICCDLVHPNQPIWSCPKCYHILHLQCNTEWASSSVSYAGWHCAACRNISRIIPREYYCFCGKKQNPQFNRNFVAHSCGELCNRKMPCGHVCTSKCHPGPCTPCHEIVLSQCGCGKDTFLMECNQTLDFSCQAICDKFLDCGDHTCQQVCHGGACQRCKVTVKRLCNCSKKLVSVVCGNWRSYLGGYRCETACGALLSCGRHKCAEVCHLGPCGECAPALRCFCGKMNLSCINTRVYLEGYSCGAVCDRLLSCGRHKCAKFCHRVPCGKCYWICEVTSIDGLRNMFT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -