Tyan032976.1
Basic Information
- Insect
- Topomyia yanbarensis
- Gene Symbol
- -
- Assembly
- GCA_030247195.1
- Location
- CM058069.1:309614959-309618696[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.057 5.8 9.6 4.3 3 23 343 364 342 364 0.91 2 8 0.0026 0.27 13.8 1.8 3 23 447 468 446 468 0.96 3 8 0.031 3.2 10.4 0.2 2 23 706 728 705 728 0.94 4 8 0.00031 0.032 16.7 0.3 2 23 756 778 756 778 0.93 5 8 0.027 2.7 10.6 3.6 2 23 825 847 824 847 0.96 6 8 0.26 27 7.5 4.2 2 23 861 883 860 883 0.92 7 8 0.00033 0.033 16.6 0.2 2 23 935 957 935 957 0.95 8 8 0.096 9.8 8.9 0.1 1 23 1038 1060 1038 1060 0.99
Sequence Information
- Coding Sequence
- ATGGCCACCTCAGTTTATGCAACGCCACCGCCCGATTTCAGCGGGGAAGAAGCCACCTTAAGTGATACCTCTAACTCATCGCAAACGATCAGTTCCAACAATTCAGCAACGAAAGCCTCGAAACGGTCACTGTCCTCCACATTCCTGGATTCACCACACGCCATCAACACTATCACGCAACTTAGTTCGGACAGTTTACCGGATTTGtcgaaaaaacgacgaaaacAATCGATGCCCAGTCGCATTTCAGCAAATGGACAGGAAGGCGGCATCCCCGTTGATGGCGCTGACAACGAGAACGGAAAACCTGAGACTTGTGCGATCGAAACGATTGCCAGTGCATTTGCGGAACATCAAAACAACTTTCAGAAGATATTTCTGTCCAACCTTAGTCAATTACAGAAACAGCATCTCTTGCAGCAACGTTTGAATGATCAGCCGGATGACGTTGCCCACGAAGAACTGATTCTGAATGGATCGGATTCTATTATTTCCCTTAAAAACCAGGAAAGTTTGCTCAGTCTACCGTCAACATTGAAAGGTCTTGAAGATAGGAAAGAGGATTCCAAGAATACAAGCAACAGTGACGAGCCTGAAAAGCTGAATGGCAATGAAGAAACCAGCTTCGACCGGAATGAAAACGAAATAATCGAGCGTAGAAATGACGATAAAGTCGATTCATTCGATAATAACGTTGAAGCTCGAATGGAACTACCAAACAATGGCCACTTAGGTGATCAATCGCATCGTGGATTCACATTCAAACGAGAAGTATTACAAAACACTGAATGGGACGGTGAGATTCGTAGTTCGTTCATTTCGAACGAATCGAAGTCCGACGATTGGCTGCCAATCCCTGGATTACCATTCCCATTTTCGCCAGAAGCGACTGCTGCATTGTCCGCATCTGGATATCTTCCACAGATGCCATTACTGGGTATGTCCTCCGTGTCATCGTTTGGAACGAACGACAATGCAAATCGTACCAATGTACCGCCGTTGAGAATTTTCAACCCAGAAGCGTACTGCGGTCTTTGTAATAAGGAATTCTGCAATAAGTACTTTCTAAAGACACACAAAGCCAATAAGCACGGAATATATGAGCCGCAAAGCGGTACTAACGAAGCTCTGCCCAACATTGGCTCATTCAATCCACTTCATCAGTTCTCGCAAGTGTTCCAACTGCAGCAACAACAAGCTGCTCTCCAAGAACAGCAGGAACAATCTAGTCACCAAAATCCGAACCAAAACGCGGATCACATACCACAACAGCTGCCCCAAATGCATCCTATGACCACCCCAAAACTGCCAATAAACCCAATTCAACCAACAGTATTTTGTGACATTTGTTTCAAAAAGTTCAGTAGTCTCAGTGCAATGCGTAAACATAGAAGCAAAGCTCACGACAGGTCAACAAACCAACAACAACAGCCTTCACAATTACAACATCAACCTTTGCAGCCAATATCTGAACATAAAACGGAACCGGAGTCACCGTCGAATCTCGGACAGATGACGCCAAATGGAGCACCATTGCGGCTTCCTGATGGCTTCCGCGAAGATTATTCCATCGAACAAGAAGACGCACCTTTCACACCGCAACCGCGTCAGCTATCGCCACTCTCGATCCAAGCTGCCCGTGAGGCAAATTTTTCCGCAGAAAAACTGAAGCTTCTAGGTGTGATGAATCCAGAAGCGTTCTGTGAAATTTGCTGCAAAGAATATTGCAATACTTATTTCCTTCGTACCCACAAACTTAAACGCCATGGAATTTTCCCACCGTCGGAAGAAATCAAGGATGAGCAGCGCAGTCCGTGGAATTTCATTCAGACTAGTCCACTTAATTTGATTGTTGGCAATACTGACGTATCTGGGCTTCCACCACCATTGAGGACTTTGTCCGAGAATGAAGAAAATAATTTGCCCAAGATAGATCTTTTGAAAGATGTAGATGCAAACAAGTCTGCTGATGAGGAACAGAATCAGGCAGATGTGTCAGATGTGAAGCAGGGAGACTCGAACGCAGAACAGGAAGCAGAAGCCATCAGCGTAGACCTGCAGAAGCTGCAATCAATGATAATGCAATTAAATGATTTGAACAATCAACGAAAGATGACGTGTGGTGTTTGTGGGAAAGAGATGGAAAATCAGTACTTATTACATGCCCACATGATCCAAGAGCATAACAATATGAACGAGAACAATAATGGAGTAAAGTCCTCTCCGGAACTAGCCCTCATGCCAACGTCGCCCAATGAGTATGAAGTGTGTAAGCAATGTGATAAAGAGTTTTCGAACGCATTCATGTTGAAGCAGCACTTGATTGAGGTTCACGGAACTGCAAATGGAAGTCTGAAACGGGAAGGATTTATTACACCGGATCGTCCCACCACTACTCCGACATTAAGTATGCCGCCGGGGCCGAGTTACATTGATAGGAAGCCAACTTTCTCGATGACGCCCACAAGCAGCTATTGTGAGATATGCAACAAAGAGCTGTGCAATAAGTATTTCATGAAAACTCATATGCAAAGGATGCATGGTATCGAGATTGAGAATGGGGCACAGATTGGGGGAGTTGTGTGCAATATTTGCAATAAAGAGTTATGCAGTAAATATTTTCTTCGTGTTCACAAGCACAATACGCATGGTATTGTTGAGGAAGGATCTCCGCTGCCGCAAACACGAAGTAACGGCGAGTCAGCGGGGGTGAAATCCGAGGGGCCATTTTCTCCGGATAGTATGCTGAAACCAGGAGAAATCTCGGATGTTAGCAACCGGTATTATTCCCATTTTACTGAGGTATGTCCGTTGTGTAGTCGACGATTCAGAAGCGCTAAATGGCTTCGAGCTCATCTTCTGAGTGATCACGGCACAATGGGTGCGGAGAAGCTTCGGGAAATTGAACACAAACTGGGAAGTGGCAACAAGCCTAATAGTCCATCTTTGAAGATACCCAATGGAGGTCTGCAAATTAATACCGCTGAACAGAAATTCAATCCGAAAGCATCTTTTGGATTTCAATCGCCGGGTGCAAAGTTTCTCATGAAAAATCCGTTCTGTGGTTTGTTTGGAGTAGATCCTTCAAATTCCAATGTTGGTCCGAAAGGCTACCAATGTTCGTACTGTCCGTTTGCAACCCCACTGCTTCCATTGTTGTTCATCCACGAAAGAACTCACACAAGCTTGGATATTGTACAACAGCAGCTGCTACAGGAAGAGGAAAAGCAGCAGCATCAGGATTCTTCTCCGCCGTCACTTGTCATCAAATCGGAATCGGCTGTATCGTTGGCGAGAGACGTCAGCAGCTATTCGATTCCGACATCAATCCCATCAACTGTAACACCTTCGTTGACGCCAGCTTCCACTCCTGTTCCATCTGCAACGCAAGAACCACTGAACTTGCAACCTTCGACGGCACAGCAGCCCTTCGATCGTGATTCACCACCCGCACCATCACAGGATTCGCACAAATCTCCGACCCCGAAATCCGAACGTAATGGACTTCTTTCGGAGATGGCTAACCTCACTCAACGGCCAGCCGTATATGCTTTGCCTCAGCAAAGTGGACCGTTGCTGATGCAGTCTTTCCTCCTGGAGGAGTCGGTTGCCGGGCACCCGAAGAATCCAGAAGAGCAGCCACCTGCAAACAGGTTTGTACCAGCTGTTGTTTTCCTACCTGTTAAAGAACGTATCCTCGCACCGATGACAATATCGTTCACGCTGAGCCCTGCCTAG
- Protein Sequence
- MATSVYATPPPDFSGEEATLSDTSNSSQTISSNNSATKASKRSLSSTFLDSPHAINTITQLSSDSLPDLSKKRRKQSMPSRISANGQEGGIPVDGADNENGKPETCAIETIASAFAEHQNNFQKIFLSNLSQLQKQHLLQQRLNDQPDDVAHEELILNGSDSIISLKNQESLLSLPSTLKGLEDRKEDSKNTSNSDEPEKLNGNEETSFDRNENEIIERRNDDKVDSFDNNVEARMELPNNGHLGDQSHRGFTFKREVLQNTEWDGEIRSSFISNESKSDDWLPIPGLPFPFSPEATAALSASGYLPQMPLLGMSSVSSFGTNDNANRTNVPPLRIFNPEAYCGLCNKEFCNKYFLKTHKANKHGIYEPQSGTNEALPNIGSFNPLHQFSQVFQLQQQQAALQEQQEQSSHQNPNQNADHIPQQLPQMHPMTTPKLPINPIQPTVFCDICFKKFSSLSAMRKHRSKAHDRSTNQQQQPSQLQHQPLQPISEHKTEPESPSNLGQMTPNGAPLRLPDGFREDYSIEQEDAPFTPQPRQLSPLSIQAAREANFSAEKLKLLGVMNPEAFCEICCKEYCNTYFLRTHKLKRHGIFPPSEEIKDEQRSPWNFIQTSPLNLIVGNTDVSGLPPPLRTLSENEENNLPKIDLLKDVDANKSADEEQNQADVSDVKQGDSNAEQEAEAISVDLQKLQSMIMQLNDLNNQRKMTCGVCGKEMENQYLLHAHMIQEHNNMNENNNGVKSSPELALMPTSPNEYEVCKQCDKEFSNAFMLKQHLIEVHGTANGSLKREGFITPDRPTTTPTLSMPPGPSYIDRKPTFSMTPTSSYCEICNKELCNKYFMKTHMQRMHGIEIENGAQIGGVVCNICNKELCSKYFLRVHKHNTHGIVEEGSPLPQTRSNGESAGVKSEGPFSPDSMLKPGEISDVSNRYYSHFTEVCPLCSRRFRSAKWLRAHLLSDHGTMGAEKLREIEHKLGSGNKPNSPSLKIPNGGLQINTAEQKFNPKASFGFQSPGAKFLMKNPFCGLFGVDPSNSNVGPKGYQCSYCPFATPLLPLLFIHERTHTSLDIVQQQLLQEEEKQQHQDSSPPSLVIKSESAVSLARDVSSYSIPTSIPSTVTPSLTPASTPVPSATQEPLNLQPSTAQQPFDRDSPPAPSQDSHKSPTPKSERNGLLSEMANLTQRPAVYALPQQSGPLLMQSFLLEESVAGHPKNPEEQPPANRFVPAVVFLPVKERILAPMTISFTLSPA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00949295;
- 90% Identity
- -
- 80% Identity
- -