Basic Information

Insect: Topomyia yanbarensis
Gene Symbol: -
Assembly: GCA_030247195.1
Location: JASDBJ010000057.1:25155-27485[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 8.1 8.2e+02 2.8 0.4 2 23 345 366 345 366 0.93

2 10 0.0068 0.69 12.5 1.1 1 23 372 399 372 399 0.98

3 10 1.2 1.2e+02 5.5 1.9 2 23 404 426 403 426 0.92

4 10 0.0005 0.051 16.1 1.6 1 23 433 455 433 455 0.95

5 10 2.9e-07 3e-05 26.2 0.8 1 23 463 485 463 485 0.99

6 10 0.00087 0.088 15.3 4.2 1 23 491 513 491 513 0.99

7 10 4.7e-06 0.00048 22.4 0.7 1 23 560 583 560 583 0.96

8 10 0.073 7.4 9.2 1.0 3 23 594 614 593 614 0.97

9 10 0.012 1.2 11.7 3.1 1 23 620 642 620 642 0.99

10 10 0.0057 0.58 12.7 0.5 1 23 648 670 648 670 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	8.1	8.2e+02	2.8	0.4	2	23	345	366	345	366	0.93
2	10	0.0068	0.69	12.5	1.1	1	23	372	399	372	399	0.98
3	10	1.2	1.2e+02	5.5	1.9	2	23	404	426	403	426	0.92
4	10	0.0005	0.051	16.1	1.6	1	23	433	455	433	455	0.95
5	10	2.9e-07	3e-05	26.2	0.8	1	23	463	485	463	485	0.99
6	10	0.00087	0.088	15.3	4.2	1	23	491	513	491	513	0.99
7	10	4.7e-06	0.00048	22.4	0.7	1	23	560	583	560	583	0.96
8	10	0.073	7.4	9.2	1.0	3	23	594	614	593	614	0.97
9	10	0.012	1.2	11.7	3.1	1	23	620	642	620	642	0.99
10	10	0.0057	0.58	12.7	0.5	1	23	648	670	648	670	0.97

Sequence Information

Coding Sequence: ATGGTGCTACGGTGCTGCATAACCAATTGTAGCAATGGAAAAAATCATTTGGCGGATCGGACCGTTGATTTTCATCCTTTTCCATCAGATCCTGAACTTCGCGAGAAATGGGTTGACTTTGTTGGTGCAGGCAACAGACCATTTCgctgcaaaaataaatttatatgCTCGGATCATTTTCCAATATTGGATGCAGATAATAGACTTCCAAATAATGcTCTTCCGACGGCGCTCCCCACCATCAATGCTTTTCAAACAGCACTTAAAAAATCCGAACATAAAGAGATCAATCCTAGACATAGCTCAATTTCGGAAGTAGTAGAGATAATCGAATTGCGAACTCTTTTCTGTAGGATTTGTCTTAAAAAAAGAACTGATCTGGTGCCTTTCAGTTCCAAGATACACAACACTACGTTGTTCGATGTTATCAACACTGTTGCCGGTTTGAATATTGATACGGACGGTATTGTTCCTACCAAAATATGCTCCAGCTGTGTCTCACAACTAGACATGGCATTCAATGTGCGTATGGATTTTCAGCGACAGGAAACTTTCCTAAAGGAGCTGGTCCAGAATAAACAGTTAATGTATCACTATAAGCTGTATGATAACCGTAGACCGGCGACTGATGTGAAGGAAGACGATCAGTTCAATCTGTTGGATAGCTCTAAGCAGGATGAATCAATATTAATTTGTACGGAAGCTACGGAGGAAGCGGATATTACGAAAATAGAATACGAAGTATCAGAAGAAGTTTACAGTACAGTTGAAGTTCGAAGTGACGATGAATCGTCAAGTGGGCTTGTGGGGATGTTTGAGGAGCATTTGATTGATGAGCACAACCAAATGGAGGATGAGGATACGTCATTACAGCAAGCATCCTTTGAAAACTCGCATTTTTCTCCGAGCGaagattttttcaaagaagacaaatctGAAATGCATATAAAACAAGAGGTTTCTTGTGGCAATGAGGAAAAAAATGTGTCCATCCGTGGTCAGGAGAAGAATCATGTCAAGTTTGCTCCCAACACTTGTTACGTTTGTAGCACTCAGCACAAGAACGTCGAAGCCCTAGAGGCCCACATCGAAAGTCACGTCGATATTCTACCTTACACCTGCAAGGTGTGTGATACAGAAACACATCCTCAGATTTTCAAAACGCTAGTGCTACTCAACAAACATTTACGTATGCACCTCTATCCGATACGTTGTGAACACTGTCCGCAGCGATTCCTAACTAAAAAGTCTTACGCAGGTCATAAGAACAATTTGCACAATACGAGCCAAATTGGTCATAACTGTAATTATTGCGGACGAGTCTTTAGTTTGAAGCGGCCGTTTCAAAAACATATAGCGGAGCATCGTGCAGTGGAAAAGGGTAAATACAAGTGCGAATACTGTAGTAAGGCCTTTCGGGATAATGCATTGCTGAAGCGACACGTAAGAATACATACAGGTGAAAAACCATATGAGTGTAAAAAGTGTGGAAAATGGTTCAACCACGAAGCTAATTTTCAGAGTCACAAGCGTAAACACATTGGTGAAAACTGTCGATTGATGAAGAGAAACAATACGTCTGGTCCGAAGCAGTATACTTGCGATTTCGAAAAATGTGATTTTGTAACCGAAGTGTACAGTAAGTTTCATTGCCATCGGAACCGGCACCTGAATCAGTACCGGTGCGAGATGTGTGAAAAACGTTTTCCATACAAGAGTTCGCTGACCAAACATATTGTTATGGTACACGAACGCAGATTGCCTGAGAGAAACCTACTCTGTCCGTACTGTCCAAAACTTTTCAACTGCAAGCAAAACTTGCAGCTCCACGTTGATATCCACGAGGGTAACCGGCATTTCAAGTGTCAATTCTGCGAAAAAGAATTTGTGCAGAAAGTGAACTGCCTAGCCCATGAAAGAACGCACACCGGAGAACGACCGTACGTATGTCGGGTCTGTCCGGCGGCATTTTCAACTTCAACAAGCAGGAAGAAACACGAGCAAAACCATTCGAATGATCATTCAGCAAGGCTAGTGTCGGGACGGAGTAAGGATGGAGCTGTGGAAAAAGCTTCGATGGCGGAACCGCTTATGATTAGTGTCGATATGACCCAGGAAAATGAAAGATATGAGGAAGTGGTAGAATATACAACTACTGACCTGTAG
Protein Sequence: MVLRCCITNCSNGKNHLADRTVDFHPFPSDPELREKWVDFVGAGNRPFRCKNKFICSDHFPILDADNRLPNNALPTALPTINAFQTALKKSEHKEINPRHSSISEVVEIIELRTLFCRICLKKRTDLVPFSSKIHNTTLFDVINTVAGLNIDTDGIVPTKICSSCVSQLDMAFNVRMDFQRQETFLKELVQNKQLMYHYKLYDNRRPATDVKEDDQFNLLDSSKQDESILICTEATEEADITKIEYEVSEEVYSTVEVRSDDESSSGLVGMFEEHLIDEHNQMEDEDTSLQQASFENSHFSPSEDFFKEDKSEMHIKQEVSCGNEEKNVSIRGQEKNHVKFAPNTCYVCSTQHKNVEALEAHIESHVDILPYTCKVCDTETHPQIFKTLVLLNKHLRMHLYPIRCEHCPQRFLTKKSYAGHKNNLHNTSQIGHNCNYCGRVFSLKRPFQKHIAEHRAVEKGKYKCEYCSKAFRDNALLKRHVRIHTGEKPYECKKCGKWFNHEANFQSHKRKHIGENCRLMKRNNTSGPKQYTCDFEKCDFVTEVYSKFHCHRNRHLNQYRCEMCEKRFPYKSSLTKHIVMVHERRLPERNLLCPYCPKLFNCKQNLQLHVDIHEGNRHFKCQFCEKEFVQKVNCLAHERTHTGERPYVCRVCPAAFSTSTSRKKHEQNHSNDHSARLVSGRSKDGAVEKASMAEPLMISVDMTQENERYEEVVEYTTTDL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01461977; iTF_01462617; iTF_01461978;
90% Identity: iTF_01461977; iTF_01462617; iTF_01461978;
80% Identity: iTF_01461977; iTF_01462617; iTF_01461978;