Basic Information

Insect: Topomyia yanbarensis
Gene Symbol: -
Assembly: GCA_030247195.1
Location: CM058070.1:129890867-129893166[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 2.9 3e+02 4.2 0.4 1 23 379 404 379 404 0.91

2 10 1.5 1.5e+02 5.2 0.8 2 23 409 431 408 431 0.87

3 10 0.0016 0.16 14.5 0.2 2 23 438 459 437 459 0.97

4 10 2.9e-05 0.0029 20.0 0.2 2 23 466 487 465 487 0.98

5 10 0.0008 0.081 15.4 1.6 3 23 495 516 494 516 0.97

6 10 0.39 40 6.9 0.7 1 23 522 544 522 544 0.94

7 10 0.0038 0.38 13.3 2.4 1 23 572 594 572 594 0.99

8 10 0.01 1 11.9 0.6 1 23 598 620 598 620 0.99

9 10 0.0008 0.081 15.4 2.7 1 23 626 648 626 648 0.98

10 10 2.2e-05 0.0023 20.3 3.0 1 23 654 676 654 676 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	2.9	3e+02	4.2	0.4	1	23	379	404	379	404	0.91
2	10	1.5	1.5e+02	5.2	0.8	2	23	409	431	408	431	0.87
3	10	0.0016	0.16	14.5	0.2	2	23	438	459	437	459	0.97
4	10	2.9e-05	0.0029	20.0	0.2	2	23	466	487	465	487	0.98
5	10	0.0008	0.081	15.4	1.6	3	23	495	516	494	516	0.97
6	10	0.39	40	6.9	0.7	1	23	522	544	522	544	0.94
7	10	0.0038	0.38	13.3	2.4	1	23	572	594	572	594	0.99
8	10	0.01	1	11.9	0.6	1	23	598	620	598	620	0.99
9	10	0.0008	0.081	15.4	2.7	1	23	626	648	626	648	0.98
10	10	2.2e-05	0.0023	20.3	3.0	1	23	654	676	654	676	0.97

Sequence Information

Coding Sequence: ATGGTCCGTAAGTGTTGCGTTTCAGACTGCAATTCTAATTACGATGCGGTGCTGCGAAAGGGTCAGAGTGTAATCAGTACTTTTAAATTTCCCGATGATCCCGAACTTCGAAACCGTTGGATCCGAGCTGTGAAGAGAGGTGATAATTGGAAACCAGGTACAACAGCAAGCGTTTGTATCAATCACTTTCAACCGGAAGATATACTGAAATACGGTAAACCTGCCAAGTTGAAACCGAACGCGGTTCCAACCATTTTTGGGCTAGAACTAAACAAAATCCGCACTCCTATTAAACGCGGTAGACCAAGGACCACGGTAGTAGATCCACGCACAACGAAATTAGACTGTGCGGAACATATAACTGAGGAATACGTAGCTCCTGTGAGGAATGTCTTGGAAGAGTTGATCTTAGACTTCGAAAGCTTCAATCAGCGAGTAGACAGTGAAAAATTAGAGCGTTGGCACCATTATCGAAATAATAATATTCTGCATTTCTACAACATTATTGATGACGATGTAAACGACGCTATACGGATAGGAAATAGTATAAAAGTTTTCCAGGATATGACAATAAGTCTATTTATAGGAAACCTGAAGCAAGCTGACGAGGTCTTAACTTGGGCTCTAGGGCAGGAATTGAAAATATCTCGATGGTCGCAGTTTGACATAATATTACAGAAATACGATAGAAAAATCCTGAACTTGCGAGAAGTGAATAACGGATGTGACCCTCAACTAGAAAGTATACAAGACACCAATGAGAATACAATTGCGTATGATGATCGTAACTGTGATAGTTTAATTATTGAAACAATAGATTATAACAGAGAATGCTCACAGACTATACAGTTGGAAATAGAAGCCAATTTGGATTCGCATGAAAACATTGAATTTCTAACAATAGAGGACAATGACGAATCTACGTTTATTGAGGATTCTGTTTGCAAGCGTAATCCCCTTCGAATCTCCAAACAGCAAGCATTGACGCTGGAAGAACGGTGCGAACGAAGAACTGTTCACGAAACTATACGAGATTTGAAAAAAGCGCGAAACAAATGTTTCATATGTAGTCAGGAACACGAGTCCATTGAGGAACTTGAGCATCACTTACCAGAACATATTGCTATGTTACCATATCGTTGTACCGAATGTGTTTCACAGGAAATTACGTTGAAAACTCTTGCATCATTGAATAAACATTTCTTGATGCATTTGAAACCGTTAAAGTGTCGAACTTGCGATGTAAGGTTTTCTAGCTATGGAACAAGATTGTTGCACGAGCAGAACAGTCACGAGTATAATAGACCATTGACGTGCGATGTTTGTGGAAAGGTGCTGAAATCGCTTCGAGGTTATCAGTATCATATCAAGATCCATACTGAACCGGAAACAATGAAATGCCAAATTTGTGGGAAAGTTCTCTCATCCGGCTACGAACTGAAATTACACATGCGAGTTCATACCAAGGAAAAACCAAACCATTGCCCTTTCTGCGATGCAACTTTTAACAGAGTGTCCAATCTGGTTGAACACAAACGACGTTATCACTTTAAAGAAAAACCATTTGTTTGTACGGTTTGTGATGAGCGTTTTCTGTCCAATGCTGAACACTCACGTCATATATTAAGCCATGATCCTGCAGCATTTAAGGGGTCTAAAAAGAATAGAGCACGGAGAATGAATGCAGTAGTAAATGAGAAGTTTACGAAAGACTACCAATGCTTGATCTGTGGTAAACGAATGTCGGCTAGGGTCAACTATCATTCACACATGCGAAAACATCGGAAACAATATCAATGCAGCTATTGTGGCCTTCGAATAGGACAACGTAGAGATTTTATGGATCATGAAAACACTCACACCGGGAATAGGCCTTACAAGTGTGAAATTTGCTCGAAACGGTTCCAAACATCGTCTACGTATTACGGTCACCGAAAAGTCCACTCAACGGAGAAACGTTTTGCGTGTGATGTTTGTGATCGTCGATTCAGTCGACTGACGCATTTGACTTCGCATTCTAGGACACATTCTGCGGCAGGCCAGGAACAACGAGTTACTCATCGTACCAGCGGTAATCATTGCGATGTTTCACAATGTAAGCCCGTAGCGTCCAACTGCACTATTATGCCTGCAGGTGATTCTATGTGTACAAATATGAGTGCTCCTGAACATGCGACATCCTTGACAAAAGTGAAGGATTGCGAGAAACTATTATTTGAAGTCCAAACATCGGGATCGTAG
Protein Sequence: MVRKCCVSDCNSNYDAVLRKGQSVISTFKFPDDPELRNRWIRAVKRGDNWKPGTTASVCINHFQPEDILKYGKPAKLKPNAVPTIFGLELNKIRTPIKRGRPRTTVVDPRTTKLDCAEHITEEYVAPVRNVLEELILDFESFNQRVDSEKLERWHHYRNNNILHFYNIIDDDVNDAIRIGNSIKVFQDMTISLFIGNLKQADEVLTWALGQELKISRWSQFDIILQKYDRKILNLREVNNGCDPQLESIQDTNENTIAYDDRNCDSLIIETIDYNRECSQTIQLEIEANLDSHENIEFLTIEDNDESTFIEDSVCKRNPLRISKQQALTLEERCERRTVHETIRDLKKARNKCFICSQEHESIEELEHHLPEHIAMLPYRCTECVSQEITLKTLASLNKHFLMHLKPLKCRTCDVRFSSYGTRLLHEQNSHEYNRPLTCDVCGKVLKSLRGYQYHIKIHTEPETMKCQICGKVLSSGYELKLHMRVHTKEKPNHCPFCDATFNRVSNLVEHKRRYHFKEKPFVCTVCDERFLSNAEHSRHILSHDPAAFKGSKKNRARRMNAVVNEKFTKDYQCLICGKRMSARVNYHSHMRKHRKQYQCSYCGLRIGQRRDFMDHENTHTGNRPYKCEICSKRFQTSSTYYGHRKVHSTEKRFACDVCDRRFSRLTHLTSHSRTHSAAGQEQRVTHRTSGNHCDVSQCKPVASNCTIMPAGDSMCTNMSAPEHATSLTKVKDCEKLLFEVQTSGS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01461956;
90% Identity: iTF_01461956;
80% Identity: iTF_01461956;