Tyan062868.1
Basic Information
- Insect
- Topomyia yanbarensis
- Gene Symbol
- -
- Assembly
- GCA_030247195.1
- Location
- CM058070.1:342861651-342863703[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0031 0.32 13.6 0.0 2 23 225 246 224 246 0.95 2 12 0.0021 0.21 14.1 1.8 2 23 254 276 253 276 0.93 3 12 0.025 2.5 10.7 0.4 1 23 283 305 283 305 0.97 4 12 0.22 22 7.8 2.7 2 23 309 333 308 333 0.92 5 12 0.5 50 6.6 1.7 1 23 338 360 338 361 0.95 6 12 0.28 29 7.4 0.2 3 22 382 401 381 403 0.87 7 12 0.00078 0.08 15.4 3.7 1 23 424 447 424 447 0.98 8 12 4.3e-05 0.0043 19.4 0.1 3 23 454 475 452 475 0.96 9 12 7.9e-06 0.00081 21.7 1.8 1 23 481 503 481 503 0.99 10 12 0.0098 1 12.0 2.2 2 23 510 534 509 534 0.94 11 12 5.2 5.2e+02 3.4 7.6 1 23 540 564 540 564 0.97 12 12 2.2 2.2e+02 4.6 7.3 1 23 570 592 570 593 0.93
Sequence Information
- Coding Sequence
- ATGTTCGACTCCAGCAATTTATTGAATATTTGCCGTGCATGTCTGAACGATATCAGCACTAAAGATTCTGTTTTGGGCTATGACAACCATTTTCCTAAATACCTCTGCTTGGATTGCACTCAACGAATCGATGGGATTCTTAAGTTCCAAACGGAAACGGTGTCCAATTCGCGACTATTGTTTGCTATTGTTGAAGTAAAAGTCACCAGCAAAACCGTTTTGTTGAGAAAATTGCTACGGTCGGAGAAATCCCGCCAGACATTGTCTCGCATGGGATTTATCAACTCGAAAGATGATGTGATTAATCAACTGCTAGATGGGATTCAGCCACTCCATTCAACTTGTATCAAACAAGAAATACAGGAAAGTGTGGAACCAAACTCTATACAGTTTCAGGATTATATAGATCGTGAGGATAAGCCGGAATACAGTGAGCTGTGCATCAAAAGCCAATTTCCGGCTTGTGAAAGTACAacaaatgaatgcaatgaagaATTGGTCCTCAAATTCGAACCAGGAGAAGAGACCATACGTACCGTTGATACGGGGCCGACACAAGCCAAGCAATCCAAGAAAGTTGACCGCATACGAAAACGTCCTTGCCTGGTCGAGGGCTGTGAACCTGTCATCATCGGACAGACCGCTCAGCATATCAAGGAGAAACATCGCACGTATTGTAAGATTTGTGGATTGGTATTCAGTTCATACTATTTAGCTGCGTCGCACATAGCAGTACACAAGCCAAGTGAACAGTTGCTCAGTTGTGATGTTTGCTTTAAAACGTTCTGTCGGGATCAGGATCTGAAGAATCATTTGCTGCTCGTTCATGCTCGAATTGACGCCAAACATGTATGTCCATTTTGTGAGCAGGGATTCCAGATGATAGCTGATCTGAAAAAACACCGTGAGATACATCTTAATTCACCATGTCATTTGTGTGGCAAAAGTGAACCGTTTAAGGATTACAAACATTTGGCCGATCACTTCCGAAAGAATCACGACAAACAGTTGTACAAATGTGGTCAGTGCTCAACTGCTTTCCTCGGTCGACGTGAGCTTGAGATCCACAATAAAAAACATCACGATGGTAGTCTAATAAACTGTGTGGAATTTGCCGTGAGACAATGGGATGATACGAACCATTGCGCGTCCTGTGAGAAAATTTTTTACACTGAAGTTTATCTTAAATCACACGCAGCTGCTGTCCACAAACTGGGCGAAGATCACGATTCGAAATCCTTAACTGCTCTTGATCAGGAGGAGTACAAGTTCAAATGTAATACATGTAGTTCCAGTTTCCGTTTGAATACATCACTAAAGAGACACACTCGCAAGGTGCACGGTTCCGAGCGAATAGCTTGCGAACAATGCGGGGCCTCTTTCAAAACATCCAGTGAAGTTAATGCTCACATTCGGTACCGGCACACCAAAGATTTCTGGTACAAGTGCGAATTTTGTGACAAGCCTTGTAACACTAGCAGTGCATTAGCGGTTCATCGGAGAACTCACACAAATGAACGACCATGTAAATGTCCGTACGAGGGTTGtgttaaaaattacaaaacCCACGGAGCCCTGCAAAAGCATGTTCGAGCGAACCACACCAACGAGCGACCGTATAAATGCCACTATGAATCTTGTAACAAGGCGTACATCTGTAGCCAGCATCTGAAAGCTCATATTCATTGGCACACACGGGAAAAACCGTTCAAGTGTTTCTACTGCGAGCTATATTTCAGTACATCCCCTAACCGTAGAAAGCATTGCCAAGTTCATCACCCCGGGAAACCTGTCGGTAAGGAACTGGAGAAGATAGCGACAAATGCCGATGTGCTAGACTCCAGTGTAAATGCTGAGTAG
- Protein Sequence
- MFDSSNLLNICRACLNDISTKDSVLGYDNHFPKYLCLDCTQRIDGILKFQTETVSNSRLLFAIVEVKVTSKTVLLRKLLRSEKSRQTLSRMGFINSKDDVINQLLDGIQPLHSTCIKQEIQESVEPNSIQFQDYIDREDKPEYSELCIKSQFPACESTTNECNEELVLKFEPGEETIRTVDTGPTQAKQSKKVDRIRKRPCLVEGCEPVIIGQTAQHIKEKHRTYCKICGLVFSSYYLAASHIAVHKPSEQLLSCDVCFKTFCRDQDLKNHLLLVHARIDAKHVCPFCEQGFQMIADLKKHREIHLNSPCHLCGKSEPFKDYKHLADHFRKNHDKQLYKCGQCSTAFLGRRELEIHNKKHHDGSLINCVEFAVRQWDDTNHCASCEKIFYTEVYLKSHAAAVHKLGEDHDSKSLTALDQEEYKFKCNTCSSSFRLNTSLKRHTRKVHGSERIACEQCGASFKTSSEVNAHIRYRHTKDFWYKCEFCDKPCNTSSALAVHRRTHTNERPCKCPYEGCVKNYKTHGALQKHVRANHTNERPYKCHYESCNKAYICSQHLKAHIHWHTREKPFKCFYCELYFSTSPNRRKHCQVHHPGKPVGKELEKIATNADVLDSSVNAE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -