Tyan000241.1
Basic Information
- Insect
- Topomyia yanbarensis
- Gene Symbol
- -
- Assembly
- GCA_030247195.1
- Location
- CM058068.1:4157419-4159500[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.86 87 5.9 0.3 2 23 255 277 255 277 0.93 2 11 2.1 2.1e+02 4.7 3.0 1 23 312 335 312 335 0.89 3 11 4.8e-05 0.0049 19.2 0.9 3 23 353 374 352 374 0.96 4 11 6.6e-06 0.00068 22.0 0.6 2 23 381 402 381 402 0.97 5 11 0.00053 0.054 16.0 2.5 1 23 408 431 408 431 0.96 6 11 0.0023 0.24 14.0 1.3 1 23 437 460 437 460 0.96 7 11 0.26 26 7.5 0.1 2 23 478 500 478 500 0.96 8 11 0.017 1.8 11.2 0.6 2 23 509 530 508 530 0.96 9 11 1.2e-05 0.0012 21.2 0.9 1 23 563 585 563 585 0.95 10 11 1.4e-05 0.0014 20.9 2.8 1 23 591 613 591 613 0.99 11 11 2.5 2.6e+02 4.4 1.9 1 21 619 639 619 640 0.94
Sequence Information
- Coding Sequence
- ATGCCCTGCATTGTACCAACCTGTGACAGCAGCTGCCAGGGAACCTTAAAACGATTCCCTAACAACAATGCACTAACGGAACGTTGGCTTGAGGCGATTCAGCTGGGTTGCGGTGTCGGGATACAAACTGCGAAAAATTTGGATAATCTCGAGATTTGTGATTTGCACTTCATGTATTCTGAAAATTCATCTTCAGATGAATGCAGCTATCGAGAACCGAGTAGATTCACGAATTGTGAAGGAAGCTACGTGGAAGTGAGCAGTTGCCGGTTATGTTTGGCGTTCCACCACAGTACTGACATGATTGATCCAAAATCCACTATTGGGGAGAAACTGATTGCATCCCTCGTTCAGGAAAACTTTAACATTAGTCTTCGGAAAAAGGACGTGCTGACGCTAATTTGTCAGGAGTGTCTCGTTCAAATTGACATCCTTAGTACGATCAAGCTAAAATTCGCGGAAACGTCAATTGCATACCAGCAATTGGTTAAGATGGGGCAAGAACAGTTGCAGAATTTAGACATCAAAATTGAACAAGAGCACTTTCCGATGGATATTATAATGGAAGATGTACGCTTCGATGATTTTCTCGAACCGGAGACTTTAGTTGAAGAGGATAGTAGCGACGATGGCTGTAAAACGGAAGAGTCTGAAACACCGCCAAAAACACGCAAAGGTCGACGGAAACGAAACCTGAAACAGTCTAGAAAAGAGGTTAAGAAGCCCAAGCCACCAATCAATTTAGTAGACCACGCGGAAAGAAAATGCTACATCTGTGTCACCGTATGTGCTGATGCTAACGATTTAGTTCTGCATCTGACGGAAAAACACACCTCCAAAGATGGATATCGATGCATCGAATGTTCCCTGGATATTCCAGGGTTAGCCAAATATAATCGTCATTTGAGCCGGCATGATGAAACGGAGCGGCCCCACAAATGCAATGTTTGTCCACTGCGATTTGCGTCGCTGTTACAGTGTAAGAGTCACGAAAATAAAATCCACGGAGCGAATCACGATATTAAAGAGGCTAAACATTCTGAAAAGGTGCGGATCTGTGAGGTATGCGGTAAGGAGTTCACGCATAAAGGTAGGCTCAAGGATCATATTCAGAAAGTACATTTGAAAGTTGGAATTCCCAAGTGTAGCATTTGCGATAAAGTTTTTACGGCCAAGAACAGCCTTGAACGACACATGTTGCTGCATACTAACGAAAAACCGTACACCTGCGATCAGTGTGGTATGAGTTTCCGTCGTTTGCTGAATATGCGTCATCATAAGAGCATGGTTCACGAAGGGAAAAATCCTCACGTTTGTACCGAGTGTAACAAGGAGTTCAAAGGCTATCAAGCTTTGTATTGGCACCGGCAGAGCGAACATCTGCATCGTGCGAAAGGTCCCGCTACGAAAAAGCAAGCATGTCAGTTCGAGGTTTGCAAACTTTGCCAAATACGTTTAGCTAAAGTTAGCGAATTGGTCGAACACATTCAGCGGGAGCACGCTGGCCTGGATTACCCGCTCATTAAGTGTGCAGAGTGTCCTAAGACTTTTCTCACTTCGAGTCGATTATCGCAGCACAAATCGGTTCACACCGATAAGTATGCTTGCAAGCTGTGCGGTGCTCGTCATTGCGATAATCAGCGGCTACAGTTTCATATGGAGTCCAAACATTCGGATGGTCGTACATTCGATTGTCCGACCTGCGGGAAAACGTTCAAAACCGAGCGTCATCTTGCGACACATGTTGCTCTACACACCAAGGAGAAACTGTTCCAGTGCGAGTTCTGTCCGAAAGTGTTCGGGCGAAAATGTCAGCTGATCATTCACCGACGCACCCATACGGGAGAGAAACCTTTTCAATGCGTTGGCTGTCTGCAACGTTTCGGCGACGACGGGACATTCTGCAAGCATAAGAAGCGCTGTCAACCGTTCATTGCGAAGATCGAACGCGTGGATGAAAATTGA
- Protein Sequence
- MPCIVPTCDSSCQGTLKRFPNNNALTERWLEAIQLGCGVGIQTAKNLDNLEICDLHFMYSENSSSDECSYREPSRFTNCEGSYVEVSSCRLCLAFHHSTDMIDPKSTIGEKLIASLVQENFNISLRKKDVLTLICQECLVQIDILSTIKLKFAETSIAYQQLVKMGQEQLQNLDIKIEQEHFPMDIIMEDVRFDDFLEPETLVEEDSSDDGCKTEESETPPKTRKGRRKRNLKQSRKEVKKPKPPINLVDHAERKCYICVTVCADANDLVLHLTEKHTSKDGYRCIECSLDIPGLAKYNRHLSRHDETERPHKCNVCPLRFASLLQCKSHENKIHGANHDIKEAKHSEKVRICEVCGKEFTHKGRLKDHIQKVHLKVGIPKCSICDKVFTAKNSLERHMLLHTNEKPYTCDQCGMSFRRLLNMRHHKSMVHEGKNPHVCTECNKEFKGYQALYWHRQSEHLHRAKGPATKKQACQFEVCKLCQIRLAKVSELVEHIQREHAGLDYPLIKCAECPKTFLTSSRLSQHKSVHTDKYACKLCGARHCDNQRLQFHMESKHSDGRTFDCPTCGKTFKTERHLATHVALHTKEKLFQCEFCPKVFGRKCQLIIHRRTHTGEKPFQCVGCLQRFGDDGTFCKHKKRCQPFIAKIERVDEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00949230;
- 90% Identity
- -
- 80% Identity
- -