Basic Information

Insect: Topomyia yanbarensis
Gene Symbol: -
Assembly: GCA_030247195.1
Location: CM058069.1:33832277-33835581[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.11 11 8.7 1.9 2 23 206 228 206 228 0.89

2 20 0.21 22 7.8 0.4 1 20 240 259 240 260 0.92

3 20 2 2.1e+02 4.7 2.1 3 23 348 369 347 369 0.94

4 20 0.0033 0.34 13.5 0.4 1 19 382 400 382 403 0.94

5 20 3.1 3.2e+02 4.1 0.1 3 23 411 432 409 432 0.94

6 20 4.1 4.2e+02 3.7 1.9 2 23 555 576 554 576 0.94

7 20 5.2 5.3e+02 3.4 0.2 1 11 593 603 593 614 0.86

8 20 0.05 5.1 9.8 0.5 1 21 621 641 621 642 0.96

9 20 0.2 21 7.8 0.8 2 23 670 692 669 692 0.92

10 20 0.005 0.51 12.9 1.0 1 21 705 725 705 726 0.95

11 20 6.4 6.5e+02 3.1 0.4 1 21 733 753 733 757 0.86

12 20 0.96 98 5.7 0.8 1 23 781 805 781 805 0.91

13 20 0.0038 0.38 13.3 0.3 2 20 825 843 824 845 0.94

14 20 0.39 40 7.0 0.1 1 23 853 875 853 875 0.97

15 20 0.0093 0.94 12.1 2.0 1 21 881 901 881 903 0.94

16 20 2.4e-06 0.00025 23.3 1.3 1 23 908 931 908 931 0.97

17 20 0.24 24 7.6 2.4 1 23 936 958 936 958 0.97

18 20 0.82 83 5.9 0.3 1 23 964 989 964 989 0.90

19 20 0.00096 0.097 15.2 3.4 1 23 995 1017 995 1017 0.98

20 20 0.0011 0.11 15.0 0.1 1 20 1023 1042 1023 1044 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.11	11	8.7	1.9	2	23	206	228	206	228	0.89
2	20	0.21	22	7.8	0.4	1	20	240	259	240	260	0.92
3	20	2	2.1e+02	4.7	2.1	3	23	348	369	347	369	0.94
4	20	0.0033	0.34	13.5	0.4	1	19	382	400	382	403	0.94
5	20	3.1	3.2e+02	4.1	0.1	3	23	411	432	409	432	0.94
6	20	4.1	4.2e+02	3.7	1.9	2	23	555	576	554	576	0.94
7	20	5.2	5.3e+02	3.4	0.2	1	11	593	603	593	614	0.86
8	20	0.05	5.1	9.8	0.5	1	21	621	641	621	642	0.96
9	20	0.2	21	7.8	0.8	2	23	670	692	669	692	0.92
10	20	0.005	0.51	12.9	1.0	1	21	705	725	705	726	0.95
11	20	6.4	6.5e+02	3.1	0.4	1	21	733	753	733	757	0.86
12	20	0.96	98	5.7	0.8	1	23	781	805	781	805	0.91
13	20	0.0038	0.38	13.3	0.3	2	20	825	843	824	845	0.94
14	20	0.39	40	7.0	0.1	1	23	853	875	853	875	0.97
15	20	0.0093	0.94	12.1	2.0	1	21	881	901	881	903	0.94
16	20	2.4e-06	0.00025	23.3	1.3	1	23	908	931	908	931	0.97
17	20	0.24	24	7.6	2.4	1	23	936	958	936	958	0.97
18	20	0.82	83	5.9	0.3	1	23	964	989	964	989	0.90
19	20	0.00096	0.097	15.2	3.4	1	23	995	1017	995	1017	0.98
20	20	0.0011	0.11	15.0	0.1	1	20	1023	1042	1023	1044	0.94

Sequence Information

Coding Sequence: ATGATTTTACGACGACCAAAAATTTGCCGAATCTGTCGCGCACCGGACAATGATGATCTAATCTCAGTGCAGTTGGTACAGGAAAACGTTAGCATATCTCGGATGGTCCACGATTTGTCTGGAGTTGAGgtGACGGCCGACAAAAATTTGCCACAAAATGTTTGTCTTACGTGCCTTGAACGTTTGCGAAATGCTTATCAACTGCGACTACAGTGTATTAGTTCTGATGAGAGGTTGCGTAAAGAACTGTATGCCAGTGCCGTTGACCATAAAATAGAATCAGAAGCCATGGTAAAGTTAGAAATAGAGACATTGAATCTAGAGCTAGAGCAGAACGATGAAAATCACGAAGCTGACGAACAACATTTAACGGAAAGGCTTAATACAACGGAGCTGCTGGAAACAAGCGATGTAAGCCTATCTCTAGACGAGTTGAAGGATCATTTTCCTGACACTCATAGTATTCCTGCTCAAGAACTCATTGCGATATTGGCTCCAGACGAGGACGAATATAGAAAGAAACCTGGTTCCATGTATTTGAAACATTACGACGAATCAGATTACGAAGTTGTACAGCAGAATGACCACTACGAGCAGGTTAAATTCATCGTTGCTCGCTGTTGCGGTTGCTCGGAACGTTTCTCGAACAAAATTGACTTGCTTGCGCATGGTCATTTGATTCATAAACCTAAACAAAATAGTAAAACTGATACAATTTTTGAGTGTCCCGTGTGTTTTCGGCAGTTTAATACAGAGGATGCCATTTTGCAGCATCGGCATTGTATCGATACTAACCACTATCATTGTCGAGAATGTGACATACTGCTAAATGATCGAGAGTGTATGCTTGGTCATTTGGAGCGCGCTCATTCAATTGAAGTTAGGACCGAGGATAATGAACAACTGATATGCTCTGAGGATAGCGAACAAGAAGATGATGGATGTGAGCCTATTTCAACGTTAGCTTCGCTAACCACTAAACAATACAAATTGATACCTACTGAACATGAATATGACTTGGTGGAATTTACCTGGTTGCTTTGCTGCGGTTGTGGCAGCTTTTTCGAAAAACGGGAAGAATTCGAACAACACTCAAGAGATACACATGCCCTAGAACGAATCGAACAGCACGAAACGTTCCCGTTCGAGTGTAGCATTTGCTATCAACGCTTTAGGAACCAGGCCTCTCTAACGTATCACAGCAATGCTCCCAACAAACGGAGAATAGCCTGTCGAATCTGTGAAGGTATATTCAAGGGTGAAAGTTCCTACGGGAAGCATTTGATTAGCTATCATGGAATGGTCATTGATCACAAGCAAGCAGGCAATGAATCTGTGTTGGAAGACAATATGGGTATGGATTTTGAAGTTCAAGAAATAGAGGAAATTAAAGAGGAAATAGGTATTGAAATTATCCCAGAGGAGAATCCGAATGAAGATGAAGGCATGCAAAATGTagaatttattttggatttttccgAAGATGATTTAGACTCAGATGAAGAGTATCTAGAGGATTCCAAAAATGTTCAACCAAAACCtagaaaatttaacaaatattTACCAACCAGGCAACGCAAGGAGATGGGTCGCGTGCCAGGAAATTTACTTCGCATTATCGAGGAGCTTGATGGATACAATATTGTTGAACTCTTGAAAAAGCGATGCTGTCGCTGCTTAGCGTTTTTTAACTCACTAGACGAATTGAACGAACACACCGAGGAGCACAGGCAACAATCACTAATGGAAAGCCAAAGTTTGGACAAACCAATCAAATACCAGTGCgagttttgtttgaaaacttttgaTATCGCCCTGGTATACGTGGTTCACAAGAGAATTCGTGAACAGAAGCAATTTTACCAATGTAAATTGTGTGATTTTGTGATTGATTCCGAGTCTCGACTCAAAAATCACATGTTGCACAATGATCAGCATGCGAAATTTTTCAATCTGTTTCGAGAAGACGTTAGTGATAGATACGATGCTGTACAATTACCTGGTGTACGCTGTTGTGGCTGCGGTCATTATTTTGACAATGAGGCAGCTCTAGAGGAACATTCCAGTTCGGTACATCCAAGAGATAGCAAGAAGGACGCCCTGAAACGAACGTACACCTGTATGGTGTGTGACAAGCGCTGCTACAATAAGTCCGAAGTTGAAGCTCATCAGCTGAAGAACGGATCTACTGTTCGCTATTACTGCAAACTGTGCGACTTCGAGACGCCTAGTGAAGCTAGAATGTTAAAGCATTTATACAGTTCAATACACAATCAGGCGCTGCCATCGATCGAGGTAAAAAATGTTGAAGTTGGCTTCCAAAAGGCTGGACCGCTTCGTTACTGTTGCTTTGAGGGTTGCAGTTTGCCGTTTAACGACACTAACAAACTGCAAGAGCATGTCGATTCTATACATGGAGGTGAGAAAGAAGCGAATATCGCAGCAAATGGCATCCGGGACAATGGTAAACTACAGTGTGATATTTGCTTTCGTGTGTTTCGAACAGTAACTTTACTAAAGCAACATCAGTTATTTAATCAGCGTGTGCCTAAGAGCTATGTTTGTTCTGTATGTGGTGTAGCTAAGCAAAACAAAACAGCTCTTACGGCGCACGAGATGAGTCATACCGGTGAAAGACCTTACGCATGTACAGTGTGTGACAAGCGATTTGCCTCTCAAACAATTTTAACCTCCCACATGAAATGCCATGTCCCGAAGCAGTACCAGTGTACAGAGTGCGGCGAAAAGTTTGCCCGCGGGGAGAATCTCAAGCGTCACATACGCCATCTCCATTCCGAGGCTGCTTACTGTTGCACTTACTGTCCGCGCAAGCTTAAAACACGTGAGGCACAGGTCCTTCACGAAAGATCACACACGGGTGAGAAACCGTTTGAGTGTCGCACTGAGGGATGTGATAAGCGGTATGCTAGTATCACCGACCGGAGGCGACATGAAATGGCCAGCCACACGGGTGAACGGCCTCACAAGTGTTCCTACTGTTTGGCATCATTCGTGCGGAAGCGTCAGCTGACTATTCACGAGCGAAAGCACACCGGGGAGCGACCGTTTGTTTGTAATAGCTGCGGGAAAGCTTTCATAGATGCACCGCTTCTGAAGAAGCATGCCTGCGGTGCAGGTCGGTGA
Protein Sequence: MILRRPKICRICRAPDNDDLISVQLVQENVSISRMVHDLSGVEVTADKNLPQNVCLTCLERLRNAYQLRLQCISSDERLRKELYASAVDHKIESEAMVKLEIETLNLELEQNDENHEADEQHLTERLNTTELLETSDVSLSLDELKDHFPDTHSIPAQELIAILAPDEDEYRKKPGSMYLKHYDESDYEVVQQNDHYEQVKFIVARCCGCSERFSNKIDLLAHGHLIHKPKQNSKTDTIFECPVCFRQFNTEDAILQHRHCIDTNHYHCRECDILLNDRECMLGHLERAHSIEVRTEDNEQLICSEDSEQEDDGCEPISTLASLTTKQYKLIPTEHEYDLVEFTWLLCCGCGSFFEKREEFEQHSRDTHALERIEQHETFPFECSICYQRFRNQASLTYHSNAPNKRRIACRICEGIFKGESSYGKHLISYHGMVIDHKQAGNESVLEDNMGMDFEVQEIEEIKEEIGIEIIPEENPNEDEGMQNVEFILDFSEDDLDSDEEYLEDSKNVQPKPRKFNKYLPTRQRKEMGRVPGNLLRIIEELDGYNIVELLKKRCCRCLAFFNSLDELNEHTEEHRQQSLMESQSLDKPIKYQCEFCLKTFDIALVYVVHKRIREQKQFYQCKLCDFVIDSESRLKNHMLHNDQHAKFFNLFREDVSDRYDAVQLPGVRCCGCGHYFDNEAALEEHSSSVHPRDSKKDALKRTYTCMVCDKRCYNKSEVEAHQLKNGSTVRYYCKLCDFETPSEARMLKHLYSSIHNQALPSIEVKNVEVGFQKAGPLRYCCFEGCSLPFNDTNKLQEHVDSIHGGEKEANIAANGIRDNGKLQCDICFRVFRTVTLLKQHQLFNQRVPKSYVCSVCGVAKQNKTALTAHEMSHTGERPYACTVCDKRFASQTILTSHMKCHVPKQYQCTECGEKFARGENLKRHIRHLHSEAAYCCTYCPRKLKTREAQVLHERSHTGEKPFECRTEGCDKRYASITDRRRHEMASHTGERPHKCSYCLASFVRKRQLTIHERKHTGERPFVCNSCGKAFIDAPLLKKHACGAGR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -