Basic Information

Insect: Topomyia yanbarensis
Gene Symbol: -
Assembly: GCA_030247195.1
Location: CM058069.1:33778787-33795010[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.52 53 6.6 5.1 1 23 1052 1075 1052 1075 0.97

2 16 1.1 1.1e+02 5.5 3.4 1 23 1115 1137 1115 1137 0.97

3 16 3.2 3.3e+02 4.1 4.7 1 23 1195 1218 1195 1218 0.93

4 16 0.17 17 8.1 0.1 2 20 1229 1247 1228 1249 0.92

5 16 0.044 4.5 9.9 1.0 1 22 1256 1277 1256 1281 0.93

6 16 0.55 56 6.5 1.5 1 21 1430 1450 1430 1451 0.95

7 16 0.21 21 7.8 1.1 1 23 1458 1480 1458 1480 0.95

8 16 2.9 3e+02 4.2 2.5 1 22 1506 1528 1505 1530 0.83

9 16 0.028 2.9 10.5 1.2 3 20 1548 1565 1547 1567 0.93

10 16 0.017 1.7 11.2 2.7 1 23 1577 1599 1577 1599 0.97

11 16 0.00079 0.081 15.4 0.2 1 23 1605 1627 1605 1627 0.98

12 16 7.3e-06 0.00074 21.8 1.7 1 23 1633 1655 1633 1655 0.98

13 16 0.0075 0.77 12.4 0.9 2 23 1662 1683 1661 1683 0.97

14 16 0.0022 0.22 14.0 2.2 1 23 1689 1712 1689 1712 0.93

15 16 0.00052 0.053 16.0 1.3 1 23 1718 1740 1718 1740 0.98

16 16 3.7e-06 0.00038 22.8 0.3 1 23 1746 1768 1746 1768 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.52	53	6.6	5.1	1	23	1052	1075	1052	1075	0.97
2	16	1.1	1.1e+02	5.5	3.4	1	23	1115	1137	1115	1137	0.97
3	16	3.2	3.3e+02	4.1	4.7	1	23	1195	1218	1195	1218	0.93
4	16	0.17	17	8.1	0.1	2	20	1229	1247	1228	1249	0.92
5	16	0.044	4.5	9.9	1.0	1	22	1256	1277	1256	1281	0.93
6	16	0.55	56	6.5	1.5	1	21	1430	1450	1430	1451	0.95
7	16	0.21	21	7.8	1.1	1	23	1458	1480	1458	1480	0.95
8	16	2.9	3e+02	4.2	2.5	1	22	1506	1528	1505	1530	0.83
9	16	0.028	2.9	10.5	1.2	3	20	1548	1565	1547	1567	0.93
10	16	0.017	1.7	11.2	2.7	1	23	1577	1599	1577	1599	0.97
11	16	0.00079	0.081	15.4	0.2	1	23	1605	1627	1605	1627	0.98
12	16	7.3e-06	0.00074	21.8	1.7	1	23	1633	1655	1633	1655	0.98
13	16	0.0075	0.77	12.4	0.9	2	23	1662	1683	1661	1683	0.97
14	16	0.0022	0.22	14.0	2.2	1	23	1689	1712	1689	1712	0.93
15	16	0.00052	0.053	16.0	1.3	1	23	1718	1740	1718	1740	0.98
16	16	3.7e-06	0.00038	22.8	0.3	1	23	1746	1768	1746	1768	0.98

Sequence Information

Coding Sequence: ATGGCGACCCAGCAGCAAGCTGGAGGATCTGCCGAGAGGATGGCAACCCAGCAGCAAGCTGGAGGATCTGCCGAGAGGGTTACTCTCGAGGACAGAAGAGGTGGTGGCTACGAGAGGGGAACTCTCGAGCGTACCGTGCCGACGACGGCATACTTCGGTAGCGTCAACCGCGAATCGATATTCGACGGTTCGGAGTTGCGGTTCCCAGCCTGGAAATGGCGAATGGAACATCATCTTATAAAGATGAAACTCCAGCACACGTTGCTACGAACGCCCGAAGAAGAGGACTTCTACGAACCAGTAGTAGGTGCCTCGGAAGAGCTAGAAACAGCCAGGAAGGCTAAGCTCAGAAAACGGCTTGATGACGACGTCGAAGCATTGGACGAGATTGTCATGATGGTCAACAATGATGTTTTGAATAAACTCATTGGGCTCAATTATGCGAAAGAAGCCATGGATACTCTGGCCAGAACGTACCAAAAGGGCGGTACAGCCGCTATGGTTAATATGCGGGACCGGTTGTATACCATCAAACAAAGACATCACGACAAATTGTCCATGATTTTTGATGAGTACGATCTGATTATTCGCGAGCTAGATCGTATGGGTtcaaaaatgacagcatcggaAAAAGTTCATGCTCTACTGATCTCCATGCCAGACAAGTACCGACACGTCAAAGGCGCTCTGATGgtactgacgaatgaagaactgtgTGCCAAGCCGATCATGGAGATCAAACGAATGTTTATTGATGCTGAAGCTGGGGAAGAGAAGCAGACAGAAACGAAAAACGTTGCGCTGTCTTCAAAGTACAAGCCAAGGAGAGAGGTAACCCGATGCTTCGGTTGCAACGAAACTgggcattttaaaaataaatgccCACTAATGAAAAAGTTTAACGCGAAGGAGAAAGATAAGTTCAAGAAGCAGCAAAAGATGGAGCCTAAAAAGAGCTTTGCAATGATGACCAAAGCGGATCGTGGTAGGAGAGTCAGATTCGTAATTGACTCAGGAGCAAGCGACCATATGGTTAATGACGAGAAGCTGCTGGAAGATGTCCAAGAATTAGAGAAGCCAATCACCATTTCGACAGCGAAAGCGGGCCAGAATTTACGGGcaacaaaatttggaaaaatgcgATTAAAGAGTGTTGTGGGTAACAATAcaataaaagaattgaaattgtACAACGTTCTTTTTACTCCGGGTCTTGAAGAAAATCTCCTTTCGGTTAGAAGGGTtagcaaaaatggtaaaaggGTTACTTTTACGGATGAAGAGGTTATCTTTGAATTTGAAGATGAAGTAATTGCTTCAGGAATCTTCGTTGATGGTTTATTCCACCTTGATCTATTTCGGGAAGAAAAGTCGGCGGAAGATGGAACAAACTTAGCATTGTTCGGAAAGAAGGTGAGTTTGGAAACATGGCATAAAAGACTTGGCCATATCAGTGATACGAGTTTGGAGAAACTAATTAAGAAGGGAATGGTTGAGGGTATCAATCTAACTTCTGGAAATATTAGTGAAACAAATGTATGTGATGGTTGTATGGCGGGGAAGCAGGCTGCATCCAAATTTAAACAATTGCAGCTGCCAAGATCAAAACGACCACTGGAACTCATACATTCGGATGTTTGTGGAAGCATGGAGCAGGAAACCTATGATGGCTATCGTTACTTTGTAACCTTTATAGATGATTATACGCACTTTCTCGTGGTTTACCTCATGAAACAGAAATCGGAGGTTTTcgagaaatttaaagaattcgaAGCAATGGCGACAGCATTCTTCGAAAGACGTATTTCAATGCTAAGAGCCAATCAAGATATTGACCACACAAACATGGATTTCGTAGAATCATCTGGTCAAGATTTAATTAGATGTACACGCTTAAACCAAGGAGAACAGAACGAAGACGAGGATGCTGCTATACATCCTTCTGATGAAGAACAGCATGAAGAATGCACACTCGAAACAGAGCAAGATAATCTAGATTCACTTGAAGAATCAGTTGGCGAAACTGACTATGAAAGTACAAATGAAAATCCAACAGACGAAAGAGAGGACGTCGATGATGGTCAATCATTGCGTCGAAGCAAGAGGGAGAGAAAGATACCGGGTTGGTATTCCGATTATACAGCAAAAACAGCAatgattttcaacgaagagattcCGCAAACTATTGAGGAATTGAAGAAAGTTTCTGATTGGCAAGAATGGAAGCATGCTATTCAAGAAGAGTTTGATGCATTACATCAAAATGGCACTTGGACAGTGGTTAACTGTTTGCCAAAAGGAGTTAAACCAATTAACTCAAAATGGGTTTTCTCAATGAAAGAAGATGGAAGATATAAAGCACGATTAGTGGCAAAAGGGTGTTCACAGCGTCCTGGATTCGATTACTGTGAAACATTTGCACCAGTCGCCAAACTAGAGAGTGTTCGGTTAGCACTAGCCCTTGCTAACGAGCATAAATTGTTAGTACATCAAATGGATGTCAAAACTGCATTTCTACATGGGAAGTTAGAAGAAGAAATATACATGAAACTTCCACCAAACATGGAACAATCTATGAAAAGCCTTTGTCGCATATGCGTTAGAAGCGATCAACAGCAAAGCTCTCTGTTGTGTGTTTTTGCCACCAACATTGACTTCGACGAGCAAAGTATCGAAACGTCCAATGGAAGGAAAAAATCTACCGGAACCGTTTCACAAACGGTGGCTCAAGCCATGGCGTTGTGTTTGGATGTTGAAATAAAGCCAAACGATCAGCTCCCGCAACGCATTTGTTACAACTGTCTCGAAAAACTCCGACAATCTTGGGAGTTGAGGGAAACTTGCAAATCAAGTGAGGAACAATTAAAGCGAATGCTTCAAGATGCTGACGCCAAAATTATTGAGGTGAAACAAGAGGAATGCAAAGAGACATCGTTTGAAGATGAAGAGTTTCTGGAACCTGACGTAGCTTTCGTTGATGAGGAAGTCTTAGAGGAATACGAATTGGTACTAGAAGGGGAACAGACTAAATCTATCAATGCAAATGATCCATTGCATTCAGAGTTTGGATGGTTGCTGTCTGATCTGCCTAAGGGCCGTTATACGCTTAGAAAAGGTGACGATCCTAATTGGGATACAGTGGAAGTGGACGACTATCGTTGTTGTGGGTGTTTTCAATACTTCTGTTCAAAGGCGGCACTGGAAGATCACAGCAAACGTGATCACAAGGAGGAACCGCACGGAGATAGGACCAAGCGATACGAATGTAGTGCTTGCTTCAAGTTATTTGCTAGTACTGATGCCTTAAACTTTCATCAGAAAATGGCTCGCTCCCGATTATTATTCCATTGCAAACAGTGCCAGGTGTTGTCGCCCAGTAAACGGCAACTGAAAACTCATTTGAAGTTGCATGTTGATCAGAAGGTAGAGACTAAGTCGGTACACATTGTTCAATCCGTTCCGGAACAGTGCGAAGCCGCGGCAGAGAGCGTGATAACGAAAAGGCAACCTGAACCTCCTACAGCCACTAAATGTCGGATAGTCAGGAATTTCATCACCTTTGATTACTTGGCATTCGATGGCTTCTGCTGTTGCGATTGTTGGGTCTATTTTGAAACCAAGCGTGAGATGAAACGACACGGTGAGAAAGAACATTACAACAATCGGGGCTTCGAGGAGGAACTGGTGTGTTTCGCTTGTTGGAGGTCGTTTGAAACAAAAACCGCCTTTGAGCAGCACATGGCCGAGCTTAACGCAAAACATATCTACTACTGCAAGCCATGTAAGCTAATGTTCCGTTCGTCGGATAAACTTCAAGAGCACCAGCTTACGAGCGAGAATCACGAAGGTTTCATCGAACTGGAAATGATTGATGTTAAGGAGGAAGTGGAGATCGAGGAAGAGGTTCCAGTTAAACATTCGCCAAGCCAGCCAATAGTTGAAACCAAGCGACGCACTAAAGTTGTTCGTAAAATGAAGAGCGAATCTCCgaccgatgatgatgatgaatcAGGTGGTGGCGATAATGACGATCGAGATGCCGATTATGAGCCTGACGTGGATGGTGCGTCTCGAAACTTTGAGGAGTCATATGGTAGACTTTTGTATGCTCCTAAGATCAAGCGAAACGATCCTGATTTAGCGGAAGTAACCGTGGTGGATATCATAAGTCAGGATACGGTTCGATGTTGTGGTTGCTACAAAACATTCATCACTGATGAAGAAGTCTTGGAACATTGTAATCAATATCATCAGCAGCATAAAATTCCAGAAAACAAAGAGCAACCGTATGAATGCGAAAAGTGCTGTCGGAGGTTCGTTAAAGCTGTGTCCCTGCAGGTTCATCGGCAATTTGTGAGAACCGTTCAGATTTACGCCTGCAAGTTGTGCAACGAAAAATTCACTTTCCAAACACCATTCCTTCTGCACTATATTCAGCACGAAAATCAGTCATGGAGGTGGAAAGATGACAAACGAGGGGCGAAACCGAAAAAGACTGAGGATGATTCTAAATATTTCTGCTGTTTCAATTTTTGCAATCAATCCTACACGGATTATAACGAGTTGCTCAGCCACGTGGATGATCTTCACGGTGTCAAACGAAATCAGTTCAAGGACTACCGAGATACAGATGAAAACTGTTGCGAAATCTGTTTTCGTAGTTTTACCAATTACCGAGCTTTGCTCCGGCATGTCTCACAGCGAAAGAAGGCTAAAACTGGTCACCGCCACACTTGCAGCAGCTGTGGTATGCAGTTCAAATCACTCACGCTGCTGAAGGACCATGAAAACAAACATCTCGGCATCAAACCGTACGAATGCGAAATATGCAGCAAAACGTTTGGATCGAAAAACATCCTCACAAATCACATGATCGTTCATCAGGCTAGCCGTCCGTTCAGTTGTGAAATTTGCGGTAAAACGTTTGCCCGGAAGCGGAACTACAAGGATCATTCGATGACGCACACGAACGAGAAACCATGGGAGTGTGAAATCTGCAAACTCACTTTCCGAATTGAGTCTCAGTTTCTGACGCACAAACGGCGCCATACCGGAGTGCGGCCGTATAAGTGTAAGTTCTGCGAGAAGGTGTTTTCCCATGCCACCGATCGGAAGCGACACGAAATGGCGGCGCATACGGGTGAAAAACCACATCAGTGTAGTTTCTGTCCGTTGGCGTTTATTCGAAAGCGGCAACTGGTTATCCACGAGAGAACCCACACCGGGGAAAAACCATTCGAGTGTCAGTATTGCGGGCAGGCGTTCATTCAGCAGGGATACTTGACGCGACATTTGGCTACACACAAGCAGCGGGATGGGGCAGCTTAG
Protein Sequence: MATQQQAGGSAERMATQQQAGGSAERVTLEDRRGGGYERGTLERTVPTTAYFGSVNRESIFDGSELRFPAWKWRMEHHLIKMKLQHTLLRTPEEEDFYEPVVGASEELETARKAKLRKRLDDDVEALDEIVMMVNNDVLNKLIGLNYAKEAMDTLARTYQKGGTAAMVNMRDRLYTIKQRHHDKLSMIFDEYDLIIRELDRMGSKMTASEKVHALLISMPDKYRHVKGALMVLTNEELCAKPIMEIKRMFIDAEAGEEKQTETKNVALSSKYKPRREVTRCFGCNETGHFKNKCPLMKKFNAKEKDKFKKQQKMEPKKSFAMMTKADRGRRVRFVIDSGASDHMVNDEKLLEDVQELEKPITISTAKAGQNLRATKFGKMRLKSVVGNNTIKELKLYNVLFTPGLEENLLSVRRVSKNGKRVTFTDEEVIFEFEDEVIASGIFVDGLFHLDLFREEKSAEDGTNLALFGKKVSLETWHKRLGHISDTSLEKLIKKGMVEGINLTSGNISETNVCDGCMAGKQAASKFKQLQLPRSKRPLELIHSDVCGSMEQETYDGYRYFVTFIDDYTHFLVVYLMKQKSEVFEKFKEFEAMATAFFERRISMLRANQDIDHTNMDFVESSGQDLIRCTRLNQGEQNEDEDAAIHPSDEEQHEECTLETEQDNLDSLEESVGETDYESTNENPTDEREDVDDGQSLRRSKRERKIPGWYSDYTAKTAMIFNEEIPQTIEELKKVSDWQEWKHAIQEEFDALHQNGTWTVVNCLPKGVKPINSKWVFSMKEDGRYKARLVAKGCSQRPGFDYCETFAPVAKLESVRLALALANEHKLLVHQMDVKTAFLHGKLEEEIYMKLPPNMEQSMKSLCRICVRSDQQQSSLLCVFATNIDFDEQSIETSNGRKKSTGTVSQTVAQAMALCLDVEIKPNDQLPQRICYNCLEKLRQSWELRETCKSSEEQLKRMLQDADAKIIEVKQEECKETSFEDEEFLEPDVAFVDEEVLEEYELVLEGEQTKSINANDPLHSEFGWLLSDLPKGRYTLRKGDDPNWDTVEVDDYRCCGCFQYFCSKAALEDHSKRDHKEEPHGDRTKRYECSACFKLFASTDALNFHQKMARSRLLFHCKQCQVLSPSKRQLKTHLKLHVDQKVETKSVHIVQSVPEQCEAAAESVITKRQPEPPTATKCRIVRNFITFDYLAFDGFCCCDCWVYFETKREMKRHGEKEHYNNRGFEEELVCFACWRSFETKTAFEQHMAELNAKHIYYCKPCKLMFRSSDKLQEHQLTSENHEGFIELEMIDVKEEVEIEEEVPVKHSPSQPIVETKRRTKVVRKMKSESPTDDDDESGGGDNDDRDADYEPDVDGASRNFEESYGRLLYAPKIKRNDPDLAEVTVVDIISQDTVRCCGCYKTFITDEEVLEHCNQYHQQHKIPENKEQPYECEKCCRRFVKAVSLQVHRQFVRTVQIYACKLCNEKFTFQTPFLLHYIQHENQSWRWKDDKRGAKPKKTEDDSKYFCCFNFCNQSYTDYNELLSHVDDLHGVKRNQFKDYRDTDENCCEICFRSFTNYRALLRHVSQRKKAKTGHRHTCSSCGMQFKSLTLLKDHENKHLGIKPYECEICSKTFGSKNILTNHMIVHQASRPFSCEICGKTFARKRNYKDHSMTHTNEKPWECEICKLTFRIESQFLTHKRRHTGVRPYKCKFCEKVFSHATDRKRHEMAAHTGEKPHQCSFCPLAFIRKRQLVIHERTHTGEKPFECQYCGQAFIQQGYLTRHLATHKQRDGAA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -