Basic Information

Insect: Topomyia yanbarensis
Gene Symbol: -
Assembly: GCA_030247195.1
Location: CM058070.1:365743423-365745773[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.017 1.8 11.2 1.5 1 23 84 106 84 106 0.97

2 10 0.00022 0.023 17.1 0.2 1 23 132 155 132 155 0.97

3 10 2.4 2.5e+02 4.4 1.7 1 19 360 378 360 383 0.87

4 10 0.0058 0.59 12.7 0.2 2 23 391 412 390 412 0.97

5 10 0.00021 0.021 17.3 0.3 1 23 418 440 418 440 0.94

6 10 0.00019 0.019 17.4 3.6 2 23 502 524 502 525 0.97

7 10 9.7e-05 0.0098 18.3 0.4 1 23 530 552 530 552 0.97

8 10 0.0057 0.58 12.7 0.4 2 23 559 580 558 580 0.96

9 10 0.0012 0.13 14.8 0.2 1 23 586 609 586 609 0.97

10 10 0.031 3.2 10.4 0.4 2 23 617 638 616 638 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.017	1.8	11.2	1.5	1	23	84	106	84	106	0.97
2	10	0.00022	0.023	17.1	0.2	1	23	132	155	132	155	0.97
3	10	2.4	2.5e+02	4.4	1.7	1	19	360	378	360	383	0.87
4	10	0.0058	0.59	12.7	0.2	2	23	391	412	390	412	0.97
5	10	0.00021	0.021	17.3	0.3	1	23	418	440	418	440	0.94
6	10	0.00019	0.019	17.4	3.6	2	23	502	524	502	525	0.97
7	10	9.7e-05	0.0098	18.3	0.4	1	23	530	552	530	552	0.97
8	10	0.0057	0.58	12.7	0.4	2	23	559	580	558	580	0.96
9	10	0.0012	0.13	14.8	0.2	1	23	586	609	586	609	0.97
10	10	0.031	3.2	10.4	0.4	2	23	617	638	616	638	0.94

Sequence Information

Coding Sequence: ATGGAATCCGGCGTTGCTGCTTTTGATCCGAACGATCTTATCAGTTACTCGCCGGAAGAGTCGGAGGATGATGGCGAACCGCCACCTGCGCAGCAGGGCTCACAATCGGTCCGTCGACCGCAACAATCAGTACAACCGGAAGGAAGCTCAGTTGATTTAGCCGCCATTTCCGGCGAAGAGATACAACTTACTGTGCCATCCGCGTCCCACGTAACGGTTCAGCTTCGTAGTCCTTTGCAGGGAGCTCGCTTCAAGTGCAAGTTTTGTCCAACTTTTACCAACACGGCCGAAGATTTCATCAAACACTTCATTATGCATTTCGGTAGGAACAGAATTTCTTATAAGCAGATGTCCCAGGAAGAAGTTCGCGCACTACCGAATGCAAACGAGAAATTTGTCTGTGGAGTTTGTGGCCGTTGCTTCGAGGTGCGTGATGATGTTAAGGATCATATGATTAGCGATCATGGCTTTGTTGAGGCGAAACCGAAAGATTCACACGAAGGCCCCAAATCGAGTCCATGCGCGGGGGTTGCGGTAAAGAAGAGGAAACTGGAAGACGAATTCGTTGATTCGCAGAAGTTATCGATAAGTGATAGTTCCTCCTGTTCGTCTGATGAGGTCAAGGAGGAACAGCTTCCCATGGGACAAACCACTACGGTCGTAACGGTTCCGCAGCCTGTTATTAGTGAAACTGCACTAGTAACACCCGCTGCGGTAATTACTCAGCAGTCCTCGTTGGTTCGCGAATGCCAATTGCCACCATCTTCCGTGAATCAGCAGCAGTCGCAAAATCAAGTTGGACCAACTAAGCCAGTATCAGTCCCTCTCCTTCCTAAGGTGGACCAATCGGAAGACGCAGAGCTTAACGAGTTTCTTCAGCCGATGACACTGAAGCAACTCAAACTCAAATTGCTAGCCGGTCTAAAGCTGAAATGTCCTCAAAAGGGATGTGTCTATAAATTTGAAACTCGCGCCAAAAGAGACATCCACATCAAGTGTCATAATATCGAACCGATACTAATTGGTCCGGGTGGGCCAGTTCCAACTGGAACCGGAAAAGATGAGAAAAAAGATAACTTCAAATGTTACCAGTGCGGGATTGAGTATCCCCGCTGGAGGGAGTGCTCCCAACATCTCTGGAAGCAGCATCAGGTGGACACAAATATGTTGAAGTGTCCGGTTTGTGATGTTAGGTTTGATTTTGCTGTCAAGGTGTACCGTCATTTGCAAACACATCGACCGGTTAAGGCTTTTGCCTGCTCGTCCTGTACAAAATCTTTTGCGACGAAATCTCAACTATTGGTTCATGAAGACATTCACAAGAAACAGCTGCTATCGCGTCCTAAACCAAAACCGGCCTCCACCACAAGCGGAATCGCTGATGGTGGTAAGGCACTGGGAACCGGCGACGAGGAGCGTGATGTGGATGCTGAAGATGAAGACGATGAGCCGAAAGATCCGGACGGAAAACCCGCCGACAAGCTACCGTGGTACGCGGAACGAAAATGTGACATTTGCGGGCACATGTTCAGCACATCGAAGGTACTGTCCAAGCACATCAAAACGGTACATCATAAGATCAAACCATTCATCTGCAGTGTGTGTGGGTACAAATCAGCCCGAAAGGTTACGCTGACGATTCACATGCGTCAGCATTCGGGGCAGAAACCACTGGAGTGCAAAGAGTGTCAATTCCGGACGGCGGATCCAAGTGCACTCAAGTATCACGAGAAGCGTCACACCAAGGACAAATGGTACGAGTGCAAGTTTTGTGGGCTACTCACCATCCAAGCCAGTGCCCTGAAGACCCACATCCGTCTGAACCACCCGAAAGAGTATGAATCGATCAAGTGCGATCTGTGCAACTTCACCTCGGTTAATGCGGAATTGTTGACGCGGCACAAGAGCGACCACAAGGCCGGTTTGATCAAGAGTGAGGATTCGCACGATTCGGTGTCTTCTAAGCGTTCGAAGAATGCTCCGGAAAGTTCGTCGGATTGTTTCTTACCGATAGAAAGCACGGATTCGGTGGTTCATGACGCCGGTGGATTCACTATTCCTGCTGTGATCAATGCACCAGTGGCACACTCGGAGGAAACGCAGTTTCCTACCTGA
Protein Sequence: MESGVAAFDPNDLISYSPEESEDDGEPPPAQQGSQSVRRPQQSVQPEGSSVDLAAISGEEIQLTVPSASHVTVQLRSPLQGARFKCKFCPTFTNTAEDFIKHFIMHFGRNRISYKQMSQEEVRALPNANEKFVCGVCGRCFEVRDDVKDHMISDHGFVEAKPKDSHEGPKSSPCAGVAVKKRKLEDEFVDSQKLSISDSSSCSSDEVKEEQLPMGQTTTVVTVPQPVISETALVTPAAVITQQSSLVRECQLPPSSVNQQQSQNQVGPTKPVSVPLLPKVDQSEDAELNEFLQPMTLKQLKLKLLAGLKLKCPQKGCVYKFETRAKRDIHIKCHNIEPILIGPGGPVPTGTGKDEKKDNFKCYQCGIEYPRWRECSQHLWKQHQVDTNMLKCPVCDVRFDFAVKVYRHLQTHRPVKAFACSSCTKSFATKSQLLVHEDIHKKQLLSRPKPKPASTTSGIADGGKALGTGDEERDVDAEDEDDEPKDPDGKPADKLPWYAERKCDICGHMFSTSKVLSKHIKTVHHKIKPFICSVCGYKSARKVTLTIHMRQHSGQKPLECKECQFRTADPSALKYHEKRHTKDKWYECKFCGLLTIQASALKTHIRLNHPKEYESIKCDLCNFTSVNAELLTRHKSDHKAGLIKSEDSHDSVSSKRSKNAPESSSDCFLPIESTDSVVHDAGGFTIPAVINAPVAHSEETQFPT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00949215;
90% Identity: iTF_00949215;
80% Identity: -