Basic Information

Insect: Topomyia yanbarensis
Gene Symbol: -
Assembly: GCA_030247195.1
Location: CM058068.1:211903171-211905466[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 1 1.1e+02 5.6 1.5 2 23 172 194 171 194 0.90

2 14 0.81 83 5.9 2.7 6 23 203 220 203 220 0.98

3 14 2.7e-05 0.0027 20.1 0.3 1 23 226 249 226 249 0.95

4 14 0.0011 0.11 15.0 1.2 2 23 258 279 257 279 0.96

5 14 0.03 3.1 10.4 1.0 5 23 287 306 283 306 0.91

6 14 0.043 4.3 10.0 0.2 2 19 387 404 386 405 0.95

7 14 1.5 1.5e+02 5.1 1.8 6 23 418 435 418 435 0.98

8 14 0.0022 0.23 14.0 1.0 1 20 441 460 441 464 0.90

9 14 0.00049 0.049 16.1 0.7 2 23 473 494 472 494 0.96

10 14 0.067 6.8 9.4 0.2 2 23 503 525 502 525 0.94

11 14 0.029 2.9 10.5 4.0 1 23 532 554 532 554 0.97

12 14 0.0086 0.88 12.2 2.4 2 23 596 617 596 617 0.96

13 14 6.4e-05 0.0066 18.9 0.3 2 23 623 644 622 644 0.95

14 14 8.1e-05 0.0083 18.5 1.8 1 23 650 673 650 673 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	1	1.1e+02	5.6	1.5	2	23	172	194	171	194	0.90
2	14	0.81	83	5.9	2.7	6	23	203	220	203	220	0.98
3	14	2.7e-05	0.0027	20.1	0.3	1	23	226	249	226	249	0.95
4	14	0.0011	0.11	15.0	1.2	2	23	258	279	257	279	0.96
5	14	0.03	3.1	10.4	1.0	5	23	287	306	283	306	0.91
6	14	0.043	4.3	10.0	0.2	2	19	387	404	386	405	0.95
7	14	1.5	1.5e+02	5.1	1.8	6	23	418	435	418	435	0.98
8	14	0.0022	0.23	14.0	1.0	1	20	441	460	441	464	0.90
9	14	0.00049	0.049	16.1	0.7	2	23	473	494	472	494	0.96
10	14	0.067	6.8	9.4	0.2	2	23	503	525	502	525	0.94
11	14	0.029	2.9	10.5	4.0	1	23	532	554	532	554	0.97
12	14	0.0086	0.88	12.2	2.4	2	23	596	617	596	617	0.96
13	14	6.4e-05	0.0066	18.9	0.3	2	23	623	644	622	644	0.95
14	14	8.1e-05	0.0083	18.5	1.8	1	23	650	673	650	673	0.98

Sequence Information

Coding Sequence: ATGGCTACGCTAGTTTGCCTCACCTGCACGAAAACTACACAACCGGATTGTTCGATATCTGTTAGCGAGCGCGAGAATGTACAGACTGTCTTGTCCAAATACTTCTGGTTCACCGAGGATGTAAACCGCAAAAGCGTTCTGTGTCAAATCTGCTGGGATAAGATCAAtgattttcatcaattttaCTGCGAGATTGAGCGAGTCCATTTCCATTACGAATACAAAATACCTACCCAGTTCTTGCAGGTAAAGGAAGAACCTATCGCTCAGGAACCTGCTCCCCCATTGCCCGATGTCCTAGAAACGAACGTTTCGCTGAAAAGTGAGGACAGTGATAGCAGTGAAACATCCCCGGACAGGGGTGACGATAAAGATGATTCTTCGGACGACGAACCTCTTGTTGTAAAACAGCCGAAACGAAAAAAGCTTAAAACCCGAATTTTATCTCGTGGCCGGTCAACTGTTTCGAAAAGCATTCCAGATGATCAGCTAATTGCCGAACGGATTGAGCTGCAATGTGACACGTGTTCACTAAAGTGTAGTACGTTCGAAGATGTGCAGAAACATTCGATGGCGGAACACGAGAAACGAGCGTTTCTATACTGCTGTAAGCTCAAGTTCAGCAGAAAGTGTCGGCTCATGGACCATATTCGGTATCATATAAACCCGTCCGAGTTCCAGTGCGACATTTGCCCGAAACAGTTCCCCAACAGTGAATCACTGAGTCGCCACAAGGACAGTGCACACGCAAAAGACGGAGCCAGAACGCTTCGGTGTGGTACGTGTTCGAAGACATTCTCTCGTCTGAAAACGCTGGTCATTCATGAGAAGTATCATAAGAAAAAGTGGCGGTGCATCAGCTGTAAGAAATACTTTGCGAACGAATCATCTTTGCGCGCGCATAATCGAAGAAATCATCCGGATGGACTGCCTGTGGAGTCTGAGGAGAAAAGTCCACTAGGGGTGAAGAGTGAGAGTGATTCCAAAGATAACACTGTAGAGCAGGAGGGGGATTTCACCGGAAGTGATTTCAATGATCCCGATTTTGAGGACGAGAAACCGAAACGAGGGAAACGTAACAGATCGGGCCGGGGTGCACAACGGCCGGCGGACTGGGTACAGAAAAGCCAACAGCTGATTGCAAAGTATATCAACCTAGAATGTGACACGTGCTCGCAAAAGTTTAGCACGTTCGAGGAACTGGAACAGCATGGACCAGCGCAGCACGATAAGAAAGTTCATGTTTACTGTTGCGAATATAAGTTTAGTAGAAAGTGTCGTCTCATGGATCATCTTCAGTATCACGAAAATCCATCGAAATATCAGTGTGGTGTCTGCTCGAAGCAGTTTCAAAACAGTGAATCCTTTAAGCGCCACAACGATCTAGCTCACAAGGAGGAGGTGGAGAAAACACTGCAGTGCAGCATGTGTCCGAAAACGTTCGCGTTTGCTCGCTCTCTTAGGTTGCATGAAAAATATCACCGATCGTTGAATGAGAAGAAATGGTACTGCGCCACCTGTGATAAGTCGTTTGCCTGGGAAACGCTACTACGGCAACACAACCGTATAAATCATTCGGTTCGAGTGTTCGAGCACGTCTGTCACATCTGTGCGAAAGGTTATCACACACTGTCCTCGTACCGGTCGCATATAGCGTCACACGATGAGAATTACAAGCGGGAAAAGGCACCGGAGGAATTGGAGCGGGTGCAGTGTACGGTTTGCGAAAGCTGgCTTTTTAAGAAAGGCTTACGAAAGCACATGCGAAATCACACGGGTAGTCGAACCTGTGACCACTGCGGTCAGGTATGCAAAAGCATAGTGACCCTGCAGTATCACATGGCTCAGCATAAAAAGGCTGATCTCACCTGTTCAGTGTGCGAGAAAACGTTTAAACGGGAGATTAGTTTGAAGGAACACATGGCTGCTCACACCGGCCAGGTACTTTACACCTGTGACTTCTGCGGAAAGAATTTCAACTCCAATGCGAATTGGTCCTCGCATCGGAAAAAGTCTCATCCCAAAGAGTGGCTGGAGGATAAGATGCGCAAGAATCCTCACATGCAGCTGGAAGAGGGACAGAAACTGCTGGATCAGTGGCAGAAGCAGCAGTACTGCTAG
Protein Sequence: MATLVCLTCTKTTQPDCSISVSERENVQTVLSKYFWFTEDVNRKSVLCQICWDKINDFHQFYCEIERVHFHYEYKIPTQFLQVKEEPIAQEPAPPLPDVLETNVSLKSEDSDSSETSPDRGDDKDDSSDDEPLVVKQPKRKKLKTRILSRGRSTVSKSIPDDQLIAERIELQCDTCSLKCSTFEDVQKHSMAEHEKRAFLYCCKLKFSRKCRLMDHIRYHINPSEFQCDICPKQFPNSESLSRHKDSAHAKDGARTLRCGTCSKTFSRLKTLVIHEKYHKKKWRCISCKKYFANESSLRAHNRRNHPDGLPVESEEKSPLGVKSESDSKDNTVEQEGDFTGSDFNDPDFEDEKPKRGKRNRSGRGAQRPADWVQKSQQLIAKYINLECDTCSQKFSTFEELEQHGPAQHDKKVHVYCCEYKFSRKCRLMDHLQYHENPSKYQCGVCSKQFQNSESFKRHNDLAHKEEVEKTLQCSMCPKTFAFARSLRLHEKYHRSLNEKKWYCATCDKSFAWETLLRQHNRINHSVRVFEHVCHICAKGYHTLSSYRSHIASHDENYKREKAPEELERVQCTVCESWLFKKGLRKHMRNHTGSRTCDHCGQVCKSIVTLQYHMAQHKKADLTCSVCEKTFKREISLKEHMAAHTGQVLYTCDFCGKNFNSNANWSSHRKKSHPKEWLEDKMRKNPHMQLEEGQKLLDQWQKQQYC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00949149;
90% Identity: -
80% Identity: -