Tyan048226.1
Basic Information
- Insect
- Topomyia yanbarensis
- Gene Symbol
- -
- Assembly
- GCA_030247195.1
- Location
- CM058070.1:83951732-83953887[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.093 9.5 8.9 0.2 2 23 309 330 309 330 0.96 2 13 0.0011 0.11 14.9 0.5 2 23 336 357 335 357 0.96 3 13 5.3 5.4e+02 3.4 1.4 2 23 365 387 364 387 0.82 4 13 0.6 61 6.4 3.5 1 23 407 429 407 429 0.90 5 13 0.0011 0.12 14.9 3.1 1 23 435 457 435 457 0.97 6 13 5e-06 0.00051 22.3 0.8 1 23 463 485 463 485 0.98 7 13 0.00075 0.077 15.5 1.3 1 23 491 514 491 514 0.95 8 13 9.9 1e+03 2.5 7.0 3 23 534 554 533 555 0.91 9 13 0.0073 0.75 12.4 0.3 2 23 564 585 563 585 0.97 10 13 0.007 0.71 12.4 0.7 1 20 589 608 589 611 0.89 11 13 6.8e-05 0.0069 18.8 3.1 1 23 617 639 617 639 0.96 12 13 4.8e-05 0.0049 19.3 5.6 1 23 645 667 645 667 0.98 13 13 2.9e-05 0.0029 19.9 3.0 1 21 673 693 673 694 0.95
Sequence Information
- Coding Sequence
- ATGCCGTGTATCGTCCCCAATTGCGATTCGAAAGGGCAAAGCTTCACCCTGCGCTTTCCCCGTAGTCATTTCTTATATGAGCGCTGGCGAGAGGCAATCGAATTGGGCTCTGGCTCAACACTTCCGGCCGATATCGATCCGCTGCAAGCGGAAATTTGTCAACAGCATTTCGATGAAGTGGATCGGTACAGTGAGCCGATAAACTTTCGAAATCGGAGCTTGGACCGAGACGTTCACCTATCCAGTTGCAGATTGTGTCTTCGCTTTGATTTTGCCGAGAGGGTAGCACCTGTGTGCGGAGGACACCTAATTGGGGATATTCCGATCGAGGAAGTGCTGAAATCTATCTTCAAAATTCAACTGGACAATAATTACGGTGTCTGTGAAGCGTGTCTTGTTCGGTTGGATATCGTTGTAACTATACGCAAGCAATTTGCCGAAAGCGCTAAATGTTGGCAAAAGATGGATGTATTTATTAACGAGGAGAATCGACTAAGGTACAGAAAGGCACTGAAAGCTGAAACTATACGAGTTCCGAACAAAGTTATGTCTGCAACTAGGGAAGAAATGCAACAAGAATCACGACCGATATCGCAAGTTGTGCAGGCGATGCCAGTCAAACTAGAGACAAAGACAGATTACACAATGAAACCCTCAAAACTGGTTAATACACCCTTACACGACGAGGCATCCTTAGAGGATATTGAGCGCAATGATGGGAACAATCATCCTGTTTCGTCAAGAGATGATAATTTTGTTCGTGAGGTAAATCAATCTTCGACAATAGAAGAAACAAAAGTTACAATGCGACATAAAACTACATCTAAAGAAAACTCAATTGAGAAACGCGGTATAGgaaggcctcggaaaaagtccGCCAAAGTTTCAAAGGAGAAAGTGCATCTCAAAGGAATGACAGAGCGCAAATGCTACATGTGCGTTCAGTTGTTCCAAACATCGGAAGAACTGTTTGCTCACATGGTTGTGCACGTTGATCATGATTTGACCTGTAATGTGTGTAATCAACCATTTCCTAATCTTACTAAATATAATCGTCATTTAGCGAAGCATGATTCAGTTGAACGACCAATGAAATGTGATCACTGTGAACTAAGATTTGCTGATGGATTAGGTAAACGGCGACATGAAAAGCAACGCCATAACATCGATCACTCGGTTACGGTTTTTAACTCGGTCAACAGCAAACGAAAAGGGAAATACACGTGCCAACATTGTGGTAAGCAGTGTTTATCGTTATCTTTTCTCAAAGAACACGAAGACGCCCACGCCGGTATTAAACGACACGAGTGTAGATCCTGCGGTCGCCTGTTTGCCAACAAAAACAATCTCGAACGGCACCATCTTATCCATACATCAGAAAAGCCTTACAAATGTCAAGTTTGTGGAAAAGCCTTCCGACAGTCCCCCATGTACAAAGACCATCTGCGATTACATTCGGGCGAAACGCCGTACGCATGTAACGGTTGCGACATGCAGTTTACATCTACCACCCTGTTACGAAAACACAAAATCCGCTTCCACGGAGCAATATCCACGCCCACGAATAACAGTCTTTGTACGATCCGGCCCCACAATCACTGCCGCTTCTGCATGAGCTCATTCAAACGTCACTCGCTGTTGATTGATCATATCGAGCGGCACCATCCGTACGAGGAAATTGAGTACCTTCGATGTCCCACCTGCGAGCAGCAATTTGTCGTGAAGCAGGCGTTCGAACTTCACCTGCGCAACCACGagaaaaactttcaatgtgagttCTGTGATAAAGCGTTCAGCACCCTGCAGGCGCTGAAATTTCACCAGCCGATCCACGACGGTATCAGAGGTTATTCCTGCAAGACCTGTTCGAAATCTTTCACACACGTTGCCAACCTAAAGCGACACGAACTACTGCATTTGGGAATCAAGCGCCATGAGTGCGATTTCTGCGGAAAACGATTTGCGCAGTCGAATCAACTGCATACCCACAGGAGAACACACACCGGGGAGAAACCGTACGAGTGTCAAAAGTGTGGCAAACGATTCGCTGATAATAGCACACTTTGCAAGCATAAGAAAAGTGTGTGTAAGCCGATGTGA
- Protein Sequence
- MPCIVPNCDSKGQSFTLRFPRSHFLYERWREAIELGSGSTLPADIDPLQAEICQQHFDEVDRYSEPINFRNRSLDRDVHLSSCRLCLRFDFAERVAPVCGGHLIGDIPIEEVLKSIFKIQLDNNYGVCEACLVRLDIVVTIRKQFAESAKCWQKMDVFINEENRLRYRKALKAETIRVPNKVMSATREEMQQESRPISQVVQAMPVKLETKTDYTMKPSKLVNTPLHDEASLEDIERNDGNNHPVSSRDDNFVREVNQSSTIEETKVTMRHKTTSKENSIEKRGIGRPRKKSAKVSKEKVHLKGMTERKCYMCVQLFQTSEELFAHMVVHVDHDLTCNVCNQPFPNLTKYNRHLAKHDSVERPMKCDHCELRFADGLGKRRHEKQRHNIDHSVTVFNSVNSKRKGKYTCQHCGKQCLSLSFLKEHEDAHAGIKRHECRSCGRLFANKNNLERHHLIHTSEKPYKCQVCGKAFRQSPMYKDHLRLHSGETPYACNGCDMQFTSTTLLRKHKIRFHGAISTPTNNSLCTIRPHNHCRFCMSSFKRHSLLIDHIERHHPYEEIEYLRCPTCEQQFVVKQAFELHLRNHEKNFQCEFCDKAFSTLQALKFHQPIHDGIRGYSCKTCSKSFTHVANLKRHELLHLGIKRHECDFCGKRFAQSNQLHTHRRTHTGEKPYECQKCGKRFADNSTLCKHKKSVCKPM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -