Tyan032824.1
Basic Information
- Insect
- Topomyia yanbarensis
- Gene Symbol
- -
- Assembly
- GCA_030247195.1
- Location
- CM058069.1:306107567-306110739[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 7.8e-05 0.0079 18.6 0.7 2 23 301 322 300 322 0.97 2 13 0.0013 0.14 14.7 0.1 1 23 328 350 328 350 0.99 3 13 1 1.1e+02 5.6 1.8 1 23 360 382 360 382 0.96 4 13 2 2.1e+02 4.7 0.1 10 23 427 441 424 441 0.85 5 13 0.054 5.5 9.7 1.7 2 23 448 469 447 469 0.93 6 13 1.8 1.9e+02 4.8 0.2 1 19 475 490 475 495 0.78 7 13 0.0021 0.21 14.1 3.9 1 23 503 526 503 526 0.95 8 13 0.0029 0.29 13.7 0.2 3 23 533 553 531 553 0.95 9 13 3.7e-05 0.0038 19.6 3.2 1 23 558 580 558 580 0.96 10 13 0.00043 0.044 16.3 1.1 2 23 589 611 588 611 0.94 11 13 0.00047 0.048 16.1 2.1 2 20 618 636 617 637 0.93 12 13 3e-05 0.003 19.9 0.4 1 23 645 667 645 667 0.98 13 13 0.01 1.1 11.9 2.1 1 23 673 696 673 696 0.97
Sequence Information
- Coding Sequence
- ATGAATCCGCAGatgtgcaaaatatgtatgtctACCGAAGCCATCCTGTATCTAGACATTTTTGGTGAAGTGCACACAAAGAAAGATATAGCTGCAATCATCTCCAAGCATCTGTGGTTTGATTTTAAGCCTTCGGATGAGCACCAAGTAATCTGCAGCGAGTGTTGGAACATCCTCTATGAGTTTAACAACTTCTATGAAACAGTTGAAAATGTGCATAAGATTAGCAGGGATGAAATTCCAAAGGAAGAGTTAATAGATGATCCGTTCGGTGACGATAGTTTTGCTAATGTGGATGATATTAATTATGAACCTGAAGGGGACACAGTTTTCTTTGAGTTAGTAGAAGCAAAGTCTGGCGAATTCGCAAAAACTGATGCGGAGGAAGACATTCTTCATAAAAGTGATGCGAGACAAAAACGTCCATCGAACAAGCCTGATACAAGAAAATCTCCTAGAAATAGAAGAACCCATGTTGAAAAGGATAATGAAATAATATGCACAAAGAATGAGGAGAAAATCAAACCAACTGTGCAAAAAGAGCGGCCAGAACGACCAAGGCGAAGTAACACCAAAGCGGTGTATAAAGCGGATACTTCATCGGAAGATGAATATAGTGAGCAAATTGAAGAATCTGGGTGTGAAGAATATATGGAggagcatttttcaaaaaagagaaaaattgtCGATCAGACTGAAACGACTTCAGCGGAAATTCCGAGTGATAGCGATGATGAGCCTATCTCTAAATTAACAAGGGCAAAAcgaaaaaaggaccagaagctgTTTGAGCACATTGATGAATTTGTCTGCTATATCTGCCCAGAAAGGGTTGAATTTGATCGATTCTACCATGCGACGCTTCATTACAAGACGCTGCACAAAGAGCCTGCGTATATTAAATGTAAAGTATGCGACAAAAGATGTTATTCCCCAGGAAGTTTGATCAGTCATATGGAAGTTCACAAGGATCCTGACAGATACAAGTGCGAGATATGTGGAAAGCAGAATGACGAGCAAGTGGCTCTGGTAAAGCATATGCGAATACATCGCCCTGAGCAAGTAGAAAAAATGCCATTTCAATGTGGACAGTGTCTTCGTCGATTTCCTTCGGAGAAAAAGCGGGATAGGCACGAGAAGAATCATAATCGAAAACCGTTGGAAAAACCGACGAGAATTGTCGGACGTGACGAAGAATTGCTAGAATTTTACCGTCGAATAAGTTGTGAGATATGCGATCGACAACGGTCCGTTGACGGTAGCTGGCCGGATGTAGAATATGAAAATCTGCAGGACTTGAAGAAGCACATGCGTGAGAAACATGATGACAAGGGTTACCTTAAATGCCCCGTGTGTGATAAAAAGTGCTACATTCGCTCAATGCTTATATTACACAAGGAGTTTCATTTGAATCAGGAAAAATTCAGATGCGAAATATGCGGCAACGTGTATCAAAACTTGGAAAAACACAAGGGCGCCGCTCATGCAAATTCGGGCGAGGCGTCGTTCTGTTGTGAACACTGCGGCAAGGCATTGACAAATGAAAAGAGCTTGAAATCGCACGTTGAGCGGAAACACGCCGTCAAGGATACAATTTGCGATATATGTCAAAAACCCTTTCGTAAAAGCATGCTCGAAGGTCACAAGCGGGTTGTTCACGAGATGGCTTCCTATATGTGCACACACTGTCCTCGAATGTTTAGAAGCAAGTTCTCGCTGAATCGACACTTGGATGAACACGAAGACAAAGTCAGGGAACGGGTAAAGTGTACCATTTGCGGTATGACTTTCAAGCACAAATACATACTGACGAAGCACATCGGTTCGGTACATACTAACGAAGCACCAGTTTCGTGTGATGTTTGCgGCAAACAGTTCAAATCTAAACACCACCTCTGGAGTCATAAGTCTGATACATGCAATAGTAGAAGGTATGATTGTACAATATGTGGACGAGTCTTTAAGGTCAGAGTTCGTTTGAATGAGCACATGACAACCCATACAGGAAAAAGTTTGTATCAGTGCACTTTCTGCCCGTTGACGTTTAGTTTTCAATCAATCCTCTACACTCACCGGAAGAAGGCCCATTACGAGCAATGGCTGGAACTTCAGGCAAAACGAGAAGAGGGTGTAAAATTCAAAGTTTTAGAGGCTCCAGCCTGA
- Protein Sequence
- MNPQMCKICMSTEAILYLDIFGEVHTKKDIAAIISKHLWFDFKPSDEHQVICSECWNILYEFNNFYETVENVHKISRDEIPKEELIDDPFGDDSFANVDDINYEPEGDTVFFELVEAKSGEFAKTDAEEDILHKSDARQKRPSNKPDTRKSPRNRRTHVEKDNEIICTKNEEKIKPTVQKERPERPRRSNTKAVYKADTSSEDEYSEQIEESGCEEYMEEHFSKKRKIVDQTETTSAEIPSDSDDEPISKLTRAKRKKDQKLFEHIDEFVCYICPERVEFDRFYHATLHYKTLHKEPAYIKCKVCDKRCYSPGSLISHMEVHKDPDRYKCEICGKQNDEQVALVKHMRIHRPEQVEKMPFQCGQCLRRFPSEKKRDRHEKNHNRKPLEKPTRIVGRDEELLEFYRRISCEICDRQRSVDGSWPDVEYENLQDLKKHMREKHDDKGYLKCPVCDKKCYIRSMLILHKEFHLNQEKFRCEICGNVYQNLEKHKGAAHANSGEASFCCEHCGKALTNEKSLKSHVERKHAVKDTICDICQKPFRKSMLEGHKRVVHEMASYMCTHCPRMFRSKFSLNRHLDEHEDKVRERVKCTICGMTFKHKYILTKHIGSVHTNEAPVSCDVCGKQFKSKHHLWSHKSDTCNSRRYDCTICGRVFKVRVRLNEHMTTHTGKSLYQCTFCPLTFSFQSILYTHRKKAHYEQWLELQAKREEGVKFKVLEAPA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -