Basic Information

Insect: Topomyia yanbarensis
Gene Symbol: -
Assembly: GCA_030247195.1
Location: CM058068.1:4165128-4167238[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.53 54 6.5 0.1 2 23 259 281 259 281 0.93

2 12 0.81 83 6.0 0.2 1 23 287 309 287 309 0.97

3 12 0.27 27 7.5 0.6 2 23 317 339 316 339 0.91

4 12 0.00022 0.023 17.2 0.1 3 23 357 378 355 378 0.96

5 12 9.6e-06 0.00097 21.5 3.9 2 23 385 406 385 406 0.97

6 12 0.00094 0.095 15.2 0.8 1 23 412 435 412 435 0.95

7 12 0.00042 0.043 16.3 0.3 1 23 441 464 441 464 0.97

8 12 0.092 9.4 8.9 0.1 3 23 484 505 482 505 0.95

9 12 0.00093 0.094 15.2 1.4 2 23 514 535 513 535 0.96

10 12 5.7e-05 0.0058 19.0 0.2 1 23 568 590 568 590 0.97

11 12 7.7e-06 0.00078 21.8 1.5 1 23 596 618 596 618 0.99

12 12 0.14 14 8.4 1.8 1 21 624 644 624 645 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.53	54	6.5	0.1	2	23	259	281	259	281	0.93
2	12	0.81	83	6.0	0.2	1	23	287	309	287	309	0.97
3	12	0.27	27	7.5	0.6	2	23	317	339	316	339	0.91
4	12	0.00022	0.023	17.2	0.1	3	23	357	378	355	378	0.96
5	12	9.6e-06	0.00097	21.5	3.9	2	23	385	406	385	406	0.97
6	12	0.00094	0.095	15.2	0.8	1	23	412	435	412	435	0.95
7	12	0.00042	0.043	16.3	0.3	1	23	441	464	441	464	0.97
8	12	0.092	9.4	8.9	0.1	3	23	484	505	482	505	0.95
9	12	0.00093	0.094	15.2	1.4	2	23	514	535	513	535	0.96
10	12	5.7e-05	0.0058	19.0	0.2	1	23	568	590	568	590	0.97
11	12	7.7e-06	0.00078	21.8	1.5	1	23	596	618	596	618	0.99
12	12	0.14	14	8.4	1.8	1	21	624	644	624	645	0.94

Sequence Information

Coding Sequence: ATGCCCTGCCTTGTACCGACCTGTGACAGCAATGGGGTAACATTGAAGCCGTTCCCCAATGTCGCTATGCTTGCGGAACGCTGGCTCGAAGCAATTCATCTAGGATGTGGACTCGTGATAGAAGTTGTAAACGATCAGGATCATCTCGAAATTTGTGATGCACACTTTCCGCCTTTGGGGAACTCAAAATTGGACGGTTGCCGCTACCGTGAACCCAGCAGATTTGCGAACTGTGATGGAAGCTACGTGGACGTAAGCAGTTGTCGCCTTTGTCTTGGATTCTATCACAAAACCGCCATGGTCATGCCAAAATCGACCTCTAGCGAGAAACGTCTTGTATCCAATATTTACGAATTATTCAATATAGATCTCCAACACGATGATCTGCTGACATTAATTTGCCAAGAATGTTTGGTCCGAATTGAGATACTAAGTACGATCAAACAAAAAATCACGGAAACGGATCGCGCATATCAACAACTGGTGCGGATTGGACAGGAACATATCTTAGCACACACTGTTAAGATCGAACCAGATCCCTTTCCAGATGAAATTATTAAGGAAGAAGCGCTTTCGGAAGATTTGTTCGATCCGGAACCGTATGTGGAAGATAACAGCAGTGACGAGTGGAAACCGGATGAGTCCGAAATATCCTCAAAGGTACAAAAAAGCCAACCGAAGCGAGGTGTTAAACGCACTAAACGTGAACAAAAGAAAGAACCACGAGTTAAGCACGAAAAAAAGAAGGAAAGTGTTGTGGAGAATGTTAAGCGAAAGTGCTATATATGTAAAACATTTCTCGCCGATGCCAATGAATTGGTATCTCATCTCATAGAAAACCATACCAGTGAAAAGGTTTATCGATGCGAGGAATGTTCACTGGATATCCCCGTTTTGACAATGTACAATCGTCACTTGAGCAGACACGATGAAACGGAAAGGCCAATCAAATGCAGCGATTGTCCTTTGCGATTTGTGTCACCTCTGCAGTGTAAGAATCATGAAAATATAATTCATGGAGCAAAGCACAACATAAAGTTAGGCAAACATAGGGAAAGGGAAATAATCTGTGAAATGTGTGGTGAAAAATTTCCACAAAAAGGTAGACTTAAAGATCACATTCAGAAGGTGCATCTGAAAATCGGAATTCCCAAGTGCGACAAATGCGATAAAACTTTCACGACCACACATAGCCTCGAGCGACATATGCTGCTGCATACCAACGTGAAACCTTACTCTTGCGATCAGTGTGATATGACCTTTCGGCGTTTACTCGATATGCGGCGCCATAAGAGTGTGGTTCACGATGGCATTAATCCGTACGTCTGTGCTGATTGTGGTAAAGAATTCAGAGGCTATCAAGCCCTGTATTGGCACCGTCAGAAAACTCATCTAGGGAAAGCAGATGCCCGTAGCGCTGCCAAACGAACAAGTTATCTATATGACATTTGTAAACTTTGCGATGCACGCTTCGGCAAAATGACCGAATTGGTTGAACACATTAAACAAGATCATAGTGACATAGATTATCCTCTTATAAAATGTGCGGAGTGTCCCCAAACCTTCTTCACCCCTCAGCATCTATCGAAGCATAAATCCATCCACACTGACAAGTATGCCTGTGCACTATGCGGCACTCGCCACTGCAACACGTACCAACTGCAGTGTCACATAGATTCCAAACATCCCGATGGACGTACGTTCGAATGCCCGACCTGCGGAAAGCAATACAAAACAACACGTGCTCTAACGATACATATTGCGCTTCATACCAAACCGAGACGGTTTCAGTGCGAGTATTGCCAAAAGGCATTCGCCCGGAATTGCGAGCTGATCATTCACACACGtattcacaccggagagaaaccgTTCGAATGCGTTGGTTGTCTCAAGCGTTTCAGCGATGACGGGACATTTCATAAGCATAAAAAGAAATGTCAAGTGCTCAAAACAGTAAGCGAACAGACGGCCAGTACGGACGAAGAGGATTGA
Protein Sequence: MPCLVPTCDSNGVTLKPFPNVAMLAERWLEAIHLGCGLVIEVVNDQDHLEICDAHFPPLGNSKLDGCRYREPSRFANCDGSYVDVSSCRLCLGFYHKTAMVMPKSTSSEKRLVSNIYELFNIDLQHDDLLTLICQECLVRIEILSTIKQKITETDRAYQQLVRIGQEHILAHTVKIEPDPFPDEIIKEEALSEDLFDPEPYVEDNSSDEWKPDESEISSKVQKSQPKRGVKRTKREQKKEPRVKHEKKKESVVENVKRKCYICKTFLADANELVSHLIENHTSEKVYRCEECSLDIPVLTMYNRHLSRHDETERPIKCSDCPLRFVSPLQCKNHENIIHGAKHNIKLGKHREREIICEMCGEKFPQKGRLKDHIQKVHLKIGIPKCDKCDKTFTTTHSLERHMLLHTNVKPYSCDQCDMTFRRLLDMRRHKSVVHDGINPYVCADCGKEFRGYQALYWHRQKTHLGKADARSAAKRTSYLYDICKLCDARFGKMTELVEHIKQDHSDIDYPLIKCAECPQTFFTPQHLSKHKSIHTDKYACALCGTRHCNTYQLQCHIDSKHPDGRTFECPTCGKQYKTTRALTIHIALHTKPRRFQCEYCQKAFARNCELIIHTRIHTGEKPFECVGCLKRFSDDGTFHKHKKKCQVLKTVSEQTASTDEED

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -