Basic Information

Insect: Topomyia yanbarensis
Gene Symbol: -
Assembly: GCA_030247195.1
Location: CM058070.1:74859678-74862800[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.17 17 8.1 0.2 1 21 281 301 281 302 0.91

2 10 2.6 2.7e+02 4.4 0.3 3 23 351 373 349 373 0.87

3 10 0.00034 0.034 16.6 1.1 1 21 387 407 387 408 0.94

4 10 6.2e-05 0.0064 18.9 1.2 1 23 414 436 414 436 0.97

5 10 9.1e-05 0.0093 18.4 0.1 1 23 442 464 442 464 0.98

6 10 7.7e-06 0.00078 21.8 3.4 1 23 470 492 470 492 0.97

7 10 1e-06 0.0001 24.5 4.6 1 23 498 520 498 520 0.99

8 10 0.0011 0.12 14.9 0.5 2 23 527 548 526 548 0.95

9 10 0.00029 0.029 16.8 2.3 1 23 554 576 554 576 0.98

10 10 7.3e-06 0.00074 21.8 1.2 1 23 582 604 582 604 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.17	17	8.1	0.2	1	21	281	301	281	302	0.91
2	10	2.6	2.7e+02	4.4	0.3	3	23	351	373	349	373	0.87
3	10	0.00034	0.034	16.6	1.1	1	21	387	407	387	408	0.94
4	10	6.2e-05	0.0064	18.9	1.2	1	23	414	436	414	436	0.97
5	10	9.1e-05	0.0093	18.4	0.1	1	23	442	464	442	464	0.98
6	10	7.7e-06	0.00078	21.8	3.4	1	23	470	492	470	492	0.97
7	10	1e-06	0.0001	24.5	4.6	1	23	498	520	498	520	0.99
8	10	0.0011	0.12	14.9	0.5	2	23	527	548	526	548	0.95
9	10	0.00029	0.029	16.8	2.3	1	23	554	576	554	576	0.98
10	10	7.3e-06	0.00074	21.8	1.2	1	23	582	604	582	604	0.98

Sequence Information

Coding Sequence: ATGCTGATTTGTCGCATTTGTATGCATAACACTTCAAGTGGTGAGCAAGTAGTGCCAATTTTCTCCAAGATCGGTAATGAATTTGTCGCAAGTCTTATCATTGAATGCGCTGGTGTAGAGATCGTGGAAGACGATGGGCTACCGGCCCAAATTTGCCTCACCTGTTTAGCAGATCTTAAACAATCCAACACGTTCGTACGGACAGTACGCTTTTCTGATcagaaattgagaaaatctttgaaatgcTCAGCTGGGAATAGGATAACGAACGATGAAAGTGCCAACCACAATTCAATGGATGATGATGATCTATCATGGCAAATGATCCAGATTCATCTGACCGAAGTAAAAGAGGAAGAAGTTGATGGGGACAAATTGAAAGATGAGGCAACCTCGCAAGAGGTTGCGTGCGGAAGCGATCATGACTCCATAAGTTGGAATGAATCGAGAGAATACAAGTCAGATGGGGAGCGGGAACATCTTATGAaaatagttgaaaaatttccaaGCACAATAAGTAGGAAGTTAACGAGAAGCAAACAGAAACAACGAGCTATTGGTGAATGTCAACCTACTGAATCAGACTCCGATCAAGATCCACCTAAAAGAAAAGtaagaaaaaaatgtacaaaaaaacGGATGAACCATGTTGACATTGACGATTCGGACGATGAAAACTTTTCTGAAGCGAAACTTCTATCATTATATCAAACTGTTCCAGTTGAAGGTACGGCTCACGTATGTTGTGCCTGTCTCAAACTTTACAGCAATCGGAAGGAGCTCGTAGAGCACGGCCATATAGCTCACACCAAGAAAAAGTACATAAACGAATCGAAAACGCACATTTGCGATGTCTGTTTCCGTCGCTACTCAAAACCGGGACCCTTGGAAGTTCACAAACAAAGCTTCGTCGGACTCGATCTCGTGTACGAATGTATTCGCTGTTTAACACGTGTCACTAAACAAAACCGCAGGCAGCATGCACGTACACACCTGAGATATCGAGAACCGGAAACGGATTTGGACAAATCCCAGCGAGAGCAGCTTTGTTGTGCCAAAGACTGTTCTGCGTCCTACGTTACCGAAGAGTTGTTACTTGTACACGGCAAGGAAACCCACATTGGCCATAAAGTGGATACGGATGATCCACTACGACGATATGAGTGCCCAGTGTGCTACAAGAGGTTTGAAAAGAGGGAAGCTCTAACTCGCCATCGTCATCGAATGTACCGGACAACGCACCAGTGTGCCATCTGTGGGAAGGAGTTCAAGAATCGTTACGAAATGTTAGTGCATGAGCGGAATCACGACAACATCAAGCCGTACTCTTGTGAGATCTGCGCGAAGCGGTTTAACTCGAAGGAAGCTGTGCGGGTCCACATGCTGATCCATTCCGATAGTAAGCCATTTTCGTGTGAGATCTGTGGTTGGAGGTTTCGGCGGAAGTGCAATCTAACGAAGCATGCGTCGAAACACAGCGCGGATACGCCCTTTCAGTGCAATATATGTCAAAAAACTTTCAAGGGAAAATACCACCTTCAGTATCACATGCGGATACACACGGGTCACAAGCCGTGGCCCTGTCGATATTGTGACAAATCGTTCGCGGACCATGCAAATCGTGCAAGGCATGAGATTTCTCATACAGGTATAAAACCCTACAAATGTTCATACTGCGACAAGTCATTCATCCGTAGACGATATCAAATTGAACACGAAAGCACGCACACagGAATAAAACCGTACCGGTGCGAGATGTGTAACCGCACCTTCGGCCAGAAGACTGCCCTGAAACGGCACCTAGATATGCACCCGCTGGCTTCGGAGAATCAAAAATCACTAGAACAGCCATCTCCGATGTCGGAAATTCAGCCGATGTCACCGGAACTGCCTCGGTGA
Protein Sequence: MLICRICMHNTSSGEQVVPIFSKIGNEFVASLIIECAGVEIVEDDGLPAQICLTCLADLKQSNTFVRTVRFSDQKLRKSLKCSAGNRITNDESANHNSMDDDDLSWQMIQIHLTEVKEEEVDGDKLKDEATSQEVACGSDHDSISWNESREYKSDGEREHLMKIVEKFPSTISRKLTRSKQKQRAIGECQPTESDSDQDPPKRKVRKKCTKKRMNHVDIDDSDDENFSEAKLLSLYQTVPVEGTAHVCCACLKLYSNRKELVEHGHIAHTKKKYINESKTHICDVCFRRYSKPGPLEVHKQSFVGLDLVYECIRCLTRVTKQNRRQHARTHLRYREPETDLDKSQREQLCCAKDCSASYVTEELLLVHGKETHIGHKVDTDDPLRRYECPVCYKRFEKREALTRHRHRMYRTTHQCAICGKEFKNRYEMLVHERNHDNIKPYSCEICAKRFNSKEAVRVHMLIHSDSKPFSCEICGWRFRRKCNLTKHASKHSADTPFQCNICQKTFKGKYHLQYHMRIHTGHKPWPCRYCDKSFADHANRARHEISHTGIKPYKCSYCDKSFIRRRYQIEHESTHTGIKPYRCEMCNRTFGQKTALKRHLDMHPLASENQKSLEQPSPMSEIQPMSPELPR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01462436;
90% Identity: iTF_01462436;
80% Identity: -