Basic Information

Insect: Topomyia yanbarensis
Gene Symbol: -
Assembly: GCA_030247195.1
Location: CM058069.1:121251584-121253444[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00014 0.014 17.8 3.5 1 22 282 303 282 303 0.96

2 10 0.00034 0.035 16.6 1.9 1 23 310 333 310 333 0.95

3 10 0.27 28 7.4 1.4 1 22 350 371 350 373 0.86

4 10 0.0036 0.36 13.4 1.4 1 20 386 405 386 407 0.94

5 10 0.00042 0.042 16.3 0.2 1 23 414 436 414 436 0.97

6 10 0.0011 0.11 15.0 0.1 1 23 442 464 442 464 0.98

7 10 1.8e-06 0.00018 23.7 0.9 1 23 470 492 470 492 0.98

8 10 0.00029 0.03 16.8 1.8 1 23 498 520 498 520 0.96

9 10 0.00038 0.039 16.4 0.9 1 23 526 549 526 549 0.97

10 10 3e-06 0.00031 23.0 0.9 1 23 555 577 555 577 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00014	0.014	17.8	3.5	1	22	282	303	282	303	0.96
2	10	0.00034	0.035	16.6	1.9	1	23	310	333	310	333	0.95
3	10	0.27	28	7.4	1.4	1	22	350	371	350	373	0.86
4	10	0.0036	0.36	13.4	1.4	1	20	386	405	386	407	0.94
5	10	0.00042	0.042	16.3	0.2	1	23	414	436	414	436	0.97
6	10	0.0011	0.11	15.0	0.1	1	23	442	464	442	464	0.98
7	10	1.8e-06	0.00018	23.7	0.9	1	23	470	492	470	492	0.98
8	10	0.00029	0.03	16.8	1.8	1	23	498	520	498	520	0.96
9	10	0.00038	0.039	16.4	0.9	1	23	526	549	526	549	0.97
10	10	3e-06	0.00031	23.0	0.9	1	23	555	577	555	577	0.99

Sequence Information

Coding Sequence: ATGGCTACAAAGATGTATACTTTGGCCTGTCGTATCTGCACACAAGCGGATGTAGACGAAATGGATTCTCTATATGATACCGTAATAGAGGAAAAGACGCCTGCTCAAATAATCGAGGAATGCTTTGGTATCACGATGAAACCGGACGATGGGCTTCCAACAAAGTATTGCCAAAATTGCAAGGAAGATTTGGGCGCTGTTCTTCGCTTCCACTCCCGGTTGCAGAACTCTGAGGTCAAGTTTAAAGATATTCTCGCTATGCCGATTATTGAAATAACtGAACCTGTTGATGGTAGTATTTCGTCAGTCTTTATATCGGAAATGTTCATTAAAAGCGAGGACGACGACCGTTCTGATTGTGAAGACCTGCCACCAAATGATGATTCCTCGGAGGAAGAAATTAAAAACAGAACGCGTCGAAAATGTAGAACGCAAGCTAAACGTAGAAAGAGGAAATATGTGATAAGCGAAGAGACTGAGTTTGAAGCTGCTGATGATGATTCTGTTGATCAGAAACCTGTAGTgggaaaagaagaagaagaagttaAACCAGATACGTCAAAACCGATTAAGAAGCATTGGCCGGAAAGGAAACTATCTGTTAGTTCATCCAGCGATGACAATTCCTTAGATTACGACAGTGCACAAAGCTCTGACAATGACGCAGAAGAGAAGCCCAAAAAAAGGCGACTGTACTACGGCGTCAAAGCGGATTCACTGCCGAAACGGTGCTGTGGGTGTAAAGATCTGCCATTGGATAGTCACGAAAAAGTCCAAGAACATTCCTATAAATATCATTACCGATATCAAATAACAAACGCGCGTGAAATAGAAGAAAATCCTTTCGAATGCCCGCACTGTTACAAACGATTCGATTCCAAAAAGGAATTTCTGCGGCATCAACGTAAAATGTATGTCGAAAGGTTACACCCGTGTCCCAAGTGTGACGAAGAATTTGCTAATCACTACGTACTGCAAAGACATCTCAAATTGTATCATAAGAAGAAAATGATAATTGAAAGAATGGAAGAGTTGCGCCAAGAATCGCATATCTGCTGTGCTTGTAAGCAGAAGTTCGACTCCAGTGAACTCTTGAAGGCCCATGCGGATGAAATCCACCTGAAGGAACGCGACACGTACGAGGGCGATTTTGAGTTCGAATGTGAAGTTTGCTACCGACGTTTTAAAACGCGACAGTCTATGAAGGTTCATCAATATCGAATGTTCAAAGGCAAGAAATTTATCTGTGCCCTCTGCGGCAAGGCATTCAAAGAAAAAGCTTTCCTGCGCGACCACGAAAACTCTCACCGACGAGAAAAACCATACGAGTGTCCTAAATGTGATGCACGTTTTTCTATCAAAGGTTCGTACGATGCACACGTCAGATTGCATGACGCGAAGGACGAGTTCAAGTGTGAATACTGTGGTCGTGGTTTCCGGACCAAAAGTCTACTCAAGGGGCATCTTACGGTCCATTCCGAGGATCGTCCGTTCAAATGCCACCTGTGTCCAATCACATTCACCCAGCAACGACTGTTGGATTCTCATATTGAATTTCATCTGGGCAATAAACCATTCAAGTGTCAGCAATGTCCTGCCTCGTATCGATATCAGAGAGATTTGAGAGGCCATATTCGCGAGAAGCACGAGGGCATACTAAGCTTTCAGTGCACGTATTGTCCGAAAGCTTTCAATCGAAAGAAACCGCTGGTAGTGCACCTCAAAACGCATGAAGCCATTTAA
Protein Sequence: MATKMYTLACRICTQADVDEMDSLYDTVIEEKTPAQIIEECFGITMKPDDGLPTKYCQNCKEDLGAVLRFHSRLQNSEVKFKDILAMPIIEITEPVDGSISSVFISEMFIKSEDDDRSDCEDLPPNDDSSEEEIKNRTRRKCRTQAKRRKRKYVISEETEFEAADDDSVDQKPVVGKEEEEVKPDTSKPIKKHWPERKLSVSSSSDDNSLDYDSAQSSDNDAEEKPKKRRLYYGVKADSLPKRCCGCKDLPLDSHEKVQEHSYKYHYRYQITNAREIEENPFECPHCYKRFDSKKEFLRHQRKMYVERLHPCPKCDEEFANHYVLQRHLKLYHKKKMIIERMEELRQESHICCACKQKFDSSELLKAHADEIHLKERDTYEGDFEFECEVCYRRFKTRQSMKVHQYRMFKGKKFICALCGKAFKEKAFLRDHENSHRREKPYECPKCDARFSIKGSYDAHVRLHDAKDEFKCEYCGRGFRTKSLLKGHLTVHSEDRPFKCHLCPITFTQQRLLDSHIEFHLGNKPFKCQQCPASYRYQRDLRGHIREKHEGILSFQCTYCPKAFNRKKPLVVHLKTHEAI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00949077;
90% Identity: -
80% Identity: -