Basic Information

Insect: Topomyia yanbarensis
Gene Symbol: -
Assembly: GCA_030247195.1
Location: CM058070.1:325628729-325630855[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0017 0.17 14.4 4.6 1 23 158 180 158 180 0.97

2 11 3.6e-05 0.0037 19.6 1.5 1 23 186 208 186 208 0.98

3 11 0.0046 0.47 13.0 6.3 1 23 214 237 214 237 0.95

4 11 0.0056 0.57 12.7 2.6 1 21 243 263 243 265 0.95

5 11 0.00036 0.037 16.5 1.9 1 23 271 293 271 293 0.99

6 11 5e-05 0.0051 19.2 1.3 1 23 299 321 299 321 0.98

7 11 0.0074 0.76 12.4 3.0 1 23 329 352 329 352 0.97

8 11 0.3 30 7.3 3.0 2 23 360 381 359 381 0.97

9 11 0.0013 0.13 14.7 0.2 1 23 387 409 387 409 0.98

10 11 2.6e-05 0.0026 20.1 1.6 1 23 415 438 415 438 0.96

11 11 3.4e-07 3.4e-05 26.0 3.0 1 23 452 474 452 474 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0017	0.17	14.4	4.6	1	23	158	180	158	180	0.97
2	11	3.6e-05	0.0037	19.6	1.5	1	23	186	208	186	208	0.98
3	11	0.0046	0.47	13.0	6.3	1	23	214	237	214	237	0.95
4	11	0.0056	0.57	12.7	2.6	1	21	243	263	243	265	0.95
5	11	0.00036	0.037	16.5	1.9	1	23	271	293	271	293	0.99
6	11	5e-05	0.0051	19.2	1.3	1	23	299	321	299	321	0.98
7	11	0.0074	0.76	12.4	3.0	1	23	329	352	329	352	0.97
8	11	0.3	30	7.3	3.0	2	23	360	381	359	381	0.97
9	11	0.0013	0.13	14.7	0.2	1	23	387	409	387	409	0.98
10	11	2.6e-05	0.0026	20.1	1.6	1	23	415	438	415	438	0.96
11	11	3.4e-07	3.4e-05	26.0	3.0	1	23	452	474	452	474	0.98

Sequence Information

Coding Sequence: ATGGATGTCAAGGTGAAAACAGAAGGGACCGAAATCCAGTCGTATCTGGAATCGTTCAACAAAGAGATCGACGAAGGCGAAAAAGACGGAAATCCAGTAGAAGAGGACGATGAACAAGAAGACGATGATGAGGATGGCGGGTGCTACTTTGTGGATCAGAGTGGTAATTACTATTACCAGGCAAGTAAGGACTCGGAACCGGTTCTCACGACGGCGCCACCCGATGCAGAaatagaagaagaagaagaggaCGCAACTACGGTTACAATAGAATCTACCAAAGTAGAGCCCAAAACAGAGGATGTAAGTTATGTTCTTATCATGCAACCAACCGATGGTAAGGATGAAGATGAAACAGGCGCTGTGGATGAAGAGGAAAATGTGTATGATTTCGATGATGCAGAGTTTGGTACAGCAGAACAGAAACCTAATGTCAGCAAAGGTAAAACCCAAAGTTCCAAAGGTGTGACGCACATGTGCAACTATTGTAATTATACGACTAACAAGCGTTTTCTGTTGGCACGTCACATGAAATCTCATTCGGAGGATCGTCCTCACAAATGTTCAGTTTGCGAGCGTGGCTTCAAAACACTTGCTTCACTGCAAAACCATGTCAATACACACACTGGCACGAAACCGCACCACTGTAAGCATTGCGAAAGCAGTTTCACTACTTCCGGTGAGCTGGTACGCCATGTGCGTTATCGTCATACTCACGAGAAACCACATAAATGTCCCGAATGTGACTACGCAAGCGTTGAGTTGAGCAAACTAAAGCGTCATATTCGATGCCATACGGGCGAGCGTCCGTACCAGTGTCCTCATTGCACCTATGCTTCACCGGATACGTTTAAACTGAAGCGGCATCTACGTATTCACACCGGGGAGAAACCGTACGAGTGTGATGTTTGTCATGCTCGGTTCACTCAATCGAACTCGTTAAAAGCCCACAAGATGATCCATCAAGTTGGCGACAAACCGGTATATCATTGCGAACTATGTCCAACAACGTGCGGTCGTAAAACGGATCTGCGCATCCATGTGCAGAAGCTTCACACTCCACTTGACAAACCGATGCGTTGTCGGCGCTGCAACAACGTCTACCAAGATCGCTATTCGTATAAAATGCACACCAAAACTCACGAAGGCGAAAAATGCTATAAGTGTGATCTTTGCCCATACGCTTCGATTTCAGCACGACACCTCGAGTCGCATTTGCTAGTTCATACGGACCAAAAACCGTTCCAGTGTGAGATGTGTGAGCAGTCGTTCCGACAGAAGCAGCTGCTTAGGCGCCATGTCAACTTGTACCACAATCCGGATTACATCATTCCGGCACCGAAGGCTAAAACCCACAAGTGTCCGACATGTCCACGATCTTTCCGCCATAAAGGTAATTTGATTCGGCACATGGCTATGCACGATCCGGATTCGTTGGCCCGAGAGGAACAGCAAGCGCTTAAAGAAGGTCGCCAGAAGCGGGTACGTATACGTCTTGAGCAAGGTGATGAAGGCGAGGAAACTGACGAGAATGATCAGGATATGATGACCGTCGAGGGTGATGACGGGCAGTACGTAGTTCTAGAGGTCATACAGCTGCAGGATGATGAGGAACAGAAACCTACGACAAAAAAGAGCAAAACGGCAAAGAATGTGGTAAAAGAGGAGGAAGAAGAGGAAGAAACGGAAGAAGAAACAGAGGAAAGTGAGCAGGAAATGGATTTGCCAGAAAACAACGAAGAGTTTATTTTTAGCGAAACCGACGTGCTGATGTCCTCTTTGCCACCACCAGCGAAGAAGGCAAGGTACACCGCTCTTAACAGTACCACTGCTAGCCGAGGGGTTGCCATCGAAAAAGATATGTCGAACTGTTTTGGATTTGATGAAGAAGAAGATGACAGCTCAGACGGCAAAGCAACAATCACCATATTAAGCTAA
Protein Sequence: MDVKVKTEGTEIQSYLESFNKEIDEGEKDGNPVEEDDEQEDDDEDGGCYFVDQSGNYYYQASKDSEPVLTTAPPDAEIEEEEEDATTVTIESTKVEPKTEDVSYVLIMQPTDGKDEDETGAVDEEENVYDFDDAEFGTAEQKPNVSKGKTQSSKGVTHMCNYCNYTTNKRFLLARHMKSHSEDRPHKCSVCERGFKTLASLQNHVNTHTGTKPHHCKHCESSFTTSGELVRHVRYRHTHEKPHKCPECDYASVELSKLKRHIRCHTGERPYQCPHCTYASPDTFKLKRHLRIHTGEKPYECDVCHARFTQSNSLKAHKMIHQVGDKPVYHCELCPTTCGRKTDLRIHVQKLHTPLDKPMRCRRCNNVYQDRYSYKMHTKTHEGEKCYKCDLCPYASISARHLESHLLVHTDQKPFQCEMCEQSFRQKQLLRRHVNLYHNPDYIIPAPKAKTHKCPTCPRSFRHKGNLIRHMAMHDPDSLAREEQQALKEGRQKRVRIRLEQGDEGEETDENDQDMMTVEGDDGQYVVLEVIQLQDDEEQKPTTKKSKTAKNVVKEEEEEEETEEETEESEQEMDLPENNEEFIFSETDVLMSSLPPPAKKARYTALNSTTASRGVAIEKDMSNCFGFDEEEDDSSDGKATITILS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00949094;
90% Identity: -
80% Identity: -