Tyan014189.1
Basic Information
- Insect
- Topomyia yanbarensis
- Gene Symbol
- -
- Assembly
- GCA_030247195.1
- Location
- CM058068.1:207255667-207257678[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.49 50 6.6 1.5 1 23 288 311 288 311 0.97 2 12 0.018 1.8 11.2 0.9 2 23 319 341 318 341 0.95 3 12 0.16 16 8.2 0.6 2 22 359 379 359 381 0.75 4 12 7.1e-06 0.00072 21.9 0.6 2 23 388 409 388 409 0.97 5 12 3.9e-05 0.004 19.5 0.1 1 23 415 438 415 438 0.94 6 12 0.00015 0.015 17.7 3.1 1 23 444 467 444 467 0.97 7 12 0.21 21 7.8 0.2 1 23 475 498 475 498 0.96 8 12 0.0052 0.53 12.9 0.8 2 23 507 529 506 529 0.95 9 12 1.2e-05 0.0013 21.1 0.5 1 23 538 561 538 561 0.94 10 12 2.3e-06 0.00024 23.4 3.9 1 23 567 589 567 589 0.97 11 12 8.9e-05 0.0091 18.4 1.1 1 23 595 618 595 618 0.97 12 12 0.0033 0.34 13.5 0.1 1 20 624 643 624 644 0.95
Sequence Information
- Coding Sequence
- ATGACCTGCTGTGTCCAACAGTGCCCTGGAGGGTCAAACTTCGTCAGCTTCCCGAAACTGGACCGATTCCGACAGCGCTGGCAAGAAGCAATCAAAATTGGAAGCGGAACAACGATAGTTTTGCCACCCGGCAAAAACGCCCCATTTGAGCAGCAAATCTGCACCTCACATTTCCCCAATCCAGATGAATTGGTTTACCAGGAGCCAACTCGGTTTATTGATAGaacGGGTCAGATCCGAGAAGTCGAAAGCTGCCGGCTTTGTTTACGCTTTCAACCGAAACCAGCAATGCTTGCCATAGACGAGCAGCTTGCCGGTCATAACATAGGCAGCCTAATTGCGACAGCGTTGAAGATACGTTTGAAACCGTACGATTTTCTGCAGCATATTTGCCACGAGTGTCTAGTGAAAATAGATTTGGTCCGGGCGGTGCAGAGTCAATACGTACTCCGGGATGTTCAGTATCGGACACTGGAGCTGATGAAGATTCCGTTCATACCAGTCAAGAGTGTTCTGCCGGATACAAGGCATGATGTTTCATTGGATATTAAACCTGTTGTTTCGCCGGAAACGATGGAGGTTGAAACTTCGGATCAGAGTATAAAATTGGAGCCAGAAGTGACCATAGAAGAAAGCAATCTGGTAGAACAACTCAAACCGAAAAAGCCTAAAAGAACAATGGATAAACCAaggaaaaagtataaaaaacgtGGGCAAAACCCCGTGAAAATTATTCCGAAAGAAGATCGTCTGAGATCGATTAACGCCAGAACCTGCTACATTTGCAGCACCAAGGTTCTGTTTGATAGCACCGATGAGCTTCACAAACATCTAACGGAAGTGCATGCCGGACAAATCGACTATGTATGTGTCCATTGCGACGGCAAACGATTTGCGGTTGTGTCCGGTTATAATAACCATCTGTGTCTGCACGATGTTTCCGAACGCCCGTTAAAGTGTAACTTTTGTGCTTTACGATACTCGACCAAGAAAGGtcttcaagtacacgagaacaAACTACACGGGGCGAACCATCAACTGCCGAAGCTATGCATTTCCAAAAGGATGAAACCACAGTGCGAACACTGTGGCAAATTTTTCCCATCGATTATGCGAGCACGGGAGCATAAATTGGTTGTGCACGAGAATGGAGTCGTGGCTGAGtgtaaaatttgtttgaaaacgTTCGTTACAACGGCGAATCTTCGACGGCACATGTTGGTCCATAGTAAGGAGCGACCGTACGCGTGTAACATTTGTGGTATTCGTTTTCGTGTCAGCACTTATTTGACTAAACACATTCTGGCAGATCATCAGGGTAAATCGGCCTATCATTGTAAAGTTTGTGACATTCCCTTTCGGAATCAAAGCGAATACTACCGGCACCGGAACAAGCTTCATCTGAAACCGAACGTTCGGCTGTACAGATGTCGTCTCTGTTCGGAGGTGCCCGTGACCTCAAAGGATCTCGAAGCCCACATCGAAGTGTGTCATCCGGGCGGAGATTATCCGTACAAACGGTGTACGCAGTGCGATGAAAAATTTGTGACCAACATGAAGCTAGGCGTACATTTGCGTGCAAAGCATGATTTTGGAAGCAAACAGCAGCCGTTCGTTTGTGACGTCTGCGGAAAGGAATACAGTCAAAAACATAGCCTTCGGGTGCATTTGGCTAATGCGCACAGTGGTGAGAAGTCGTTCTGTTGCGACGTGTGCGATAAACGGTTCGTCTTTCAGAGCAACCTTACCCGGCACCAGCAGATGCACAAGCTGGTTAAACGATTCTCCTGTGACTTTTGTGGGAAAACGTTCGGTCAGAAGACGGCCATGATGAATCACCGGCGGAACATTCACACCGGCGAGAAGGCATTCGTCTGTCCGGTGTGTGGGGCAGGATTTAAGGAGAGTTCAACTTTCTATCGGCATAAGGCTGCTTGTAAGATGTAA
- Protein Sequence
- MTCCVQQCPGGSNFVSFPKLDRFRQRWQEAIKIGSGTTIVLPPGKNAPFEQQICTSHFPNPDELVYQEPTRFIDRTGQIREVESCRLCLRFQPKPAMLAIDEQLAGHNIGSLIATALKIRLKPYDFLQHICHECLVKIDLVRAVQSQYVLRDVQYRTLELMKIPFIPVKSVLPDTRHDVSLDIKPVVSPETMEVETSDQSIKLEPEVTIEESNLVEQLKPKKPKRTMDKPRKKYKKRGQNPVKIIPKEDRLRSINARTCYICSTKVLFDSTDELHKHLTEVHAGQIDYVCVHCDGKRFAVVSGYNNHLCLHDVSERPLKCNFCALRYSTKKGLQVHENKLHGANHQLPKLCISKRMKPQCEHCGKFFPSIMRAREHKLVVHENGVVAECKICLKTFVTTANLRRHMLVHSKERPYACNICGIRFRVSTYLTKHILADHQGKSAYHCKVCDIPFRNQSEYYRHRNKLHLKPNVRLYRCRLCSEVPVTSKDLEAHIEVCHPGGDYPYKRCTQCDEKFVTNMKLGVHLRAKHDFGSKQQPFVCDVCGKEYSQKHSLRVHLANAHSGEKSFCCDVCDKRFVFQSNLTRHQQMHKLVKRFSCDFCGKTFGQKTAMMNHRRNIHTGEKAFVCPVCGAGFKESSTFYRHKAACKM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -