Tyan023511.1
Basic Information
- Insect
- Topomyia yanbarensis
- Gene Symbol
- -
- Assembly
- GCA_030247195.1
- Location
- CM058069.1:160159394-160161867[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.024 2.4 10.8 1.2 1 23 158 181 158 181 0.91 2 16 0.017 1.7 11.3 0.5 2 21 195 214 194 215 0.95 3 16 1.6 1.6e+02 5.1 6.4 2 19 224 241 223 246 0.89 4 16 0.0087 0.88 12.2 1.4 1 21 286 306 286 307 0.97 5 16 9.5e-05 0.0097 18.3 1.3 2 23 327 349 326 349 0.94 6 16 0.0065 0.66 12.5 0.2 2 22 364 384 363 384 0.94 7 16 0.32 33 7.2 0.1 1 23 391 413 391 413 0.97 8 16 0.011 1.1 11.9 1.5 1 23 419 442 419 442 0.91 9 16 0.0026 0.26 13.8 1.1 1 21 460 480 460 481 0.97 10 16 3.6e-06 0.00037 22.8 0.9 1 23 488 510 488 510 0.97 11 16 0.041 4.2 10.0 0.2 1 13 516 528 516 533 0.87 12 16 0.00057 0.058 15.9 0.4 1 23 544 566 544 566 0.97 13 16 5.7e-06 0.00058 22.2 4.4 1 23 572 594 572 594 0.99 14 16 0.0052 0.53 12.8 2.5 1 23 600 622 600 622 0.98 15 16 0.014 1.4 11.5 1.1 1 23 628 650 628 650 0.98 16 16 0.0059 0.6 12.7 2.4 1 23 658 681 658 681 0.96
Sequence Information
- Coding Sequence
- ATGGATAATGTGGAAAATATTTGCCGAATTTGTTTGACTGGAGGAACGACGGGTGTGGATTGCTTGTTGATTAGTATTTTTCGACAACTGGTTGAGTCTCCGGAtccggatttttcaatagtcaCTGCAATGCAAGTAATTTGTGATTTAGAGGTATCAGAAGATGACAACTTTCCGAAACAAATTTGTATGGTGTGCTATTCGCGACTCGTGGACGCGTACGGGTTGCGCGATCAGTCCCAGAAATCGATGGAAACTCTCTCCGCTATAATGAACAAAGCGACCATGAACGAAATGTGCAATGCAGAGGAAGACGAGGAAAACATATATGATGTCGAGTATCTGGAAGAAGAGCAAGAAACGATTGCTCCAGAGCTCGTAGATTTGAAATTCGAGCGCCAAGATGACTTAGAGATTTCTGTTGAACAATCAGTTGTCGGAAACATGGCAACTGCTAGCGatgaaataatttattcctgTTGCGGATGTTCAAAATCATATGGGACTGAAATTGAGCTGAGGAAACATTCAATTCAAGTACACCACCCCAAAACAAAAGTAGAAGCATCAATTAATAAAAACCAATGTAACATATGCTTCAAGCTGTTCCGGAGCGTTTACAAACTGAAGGCTCATAGGAATGGTAAAAATAGCTTACAACCACtgaaaaaatgtgaattttgtGGTTGCAATTTTTACTCTTCAAGTGGTCTATCCAACCATTGCAAATTATTCCATACTGAGCAGTTATTTAAATGCTGTGGGTGTACGTTTAGTTCGTTAGATAAACGCAAATTTCTTCAGCACTCGGATAGTCACCAAATAGAAAAAGATTCGGGCGAGCAATTGAAACGCTATGAATGTTCGGTTTGCTATGAACGTTTCAAAACATTGTCTGAAAAAAGAACTCATCAGCGATTTCCTTATCGTAAGCGAAGAGCGAAAGAGTCGGAGGAAGAGATAACCATGACGGTGCTGCGATGCTGCGGATGCCCAAAGGTTTTCAAAACAATCTCGGAGCTACGGAGCCACCAAAATGAGCTGCACTTTCCACAGAGAGTACAGAGCTCTAACGAGGAGTTATCAATCGAGTGTGGTGGATGCTACAAGTTATTTAAAAACACTGCTCTCCTCAATAAGCACCTTCGACGAGCGGCGGACAAGAAGCTGTACGCTTGTAGTAAGTGCACCGTTGCTCGTCGCTCTTTGAAAGATTTGATCGAGCATGAGGCCACTCACAAAGGGGGAGGAGCTTTTGTCTGCTGTGGCTGCCGCAGAGGCTTCGAGACACAAGATGCTTTGGAACACCACTCGTTGGAAGAGCATTCCAAAAGACCGAAAATTTACCATAATGACGAATCCGATACCATAAGACCTTTCGAGTGTAAAATTTGCtatcgaaaatacaaatcaGCCAGAGATCTCCGCGGCCATCAGCGGTTTGTGTATTACGATAAGATTCACACTTGCGATACATGTGGCAAAGGATTCTCCCAGGAAAGTAGCCTATCCGTGCACATGGCAAGACACAAAAAGGAGGCCAAGTTTCCATGCCCTATTTGTGGGAAGAAGTATAAACACGAAGTCATGGTACGTAATTGTATAACACGTCATGAGCGGCCGAAGGAGCACAAATGCAAAATATGTAACGTTATCTTTCCGGCCGCTTCAAATCTCTATTCCCATATGGTTTCTCACTCAGAAGATCGACGTTACAAATGTGACGTTTGTGGACAGATGTTCAAACGAAGCTTCCATCTCCGAAAACATAAAATCACTCATACAAGTGAAAAGAATTACCCTTGTGAACAGTGTTCCGCCCGGTTCTGTTCCACTACAGAGCTGTACAAACATCAAATTCGCCATACCGGAGTTTATCCGTATGAATGTAGCATTTGTAGCAAGAAAGTAACAACACGCCAGGTGTATATAAAACACTATGAGAGCCACATTGATGAAAAAGACAAGATATTCACTTGTGACGTTTGTCCGACACAATTCAGTCAAGAACATTTCCTATCCAATCACGTTAAGTATACGCACCGGATCGAACCACAGGATAAGCACTGGAATGATAAATTTAATCGTCAAGGACCGAGCAGAATGAGGGGAGGTCCGCGGATGGCTGGACTTAAGTTAAGTGATTCTTTTGACACCAGTAGGTGTGAGGCGAAGATCGCGGAAACGGACAATGGTGATCCTCTCTTGCTCATGGAGACAGTGGACGAGGAAGTTGTACTGACGAACGAGTGA
- Protein Sequence
- MDNVENICRICLTGGTTGVDCLLISIFRQLVESPDPDFSIVTAMQVICDLEVSEDDNFPKQICMVCYSRLVDAYGLRDQSQKSMETLSAIMNKATMNEMCNAEEDEENIYDVEYLEEEQETIAPELVDLKFERQDDLEISVEQSVVGNMATASDEIIYSCCGCSKSYGTEIELRKHSIQVHHPKTKVEASINKNQCNICFKLFRSVYKLKAHRNGKNSLQPLKKCEFCGCNFYSSSGLSNHCKLFHTEQLFKCCGCTFSSLDKRKFLQHSDSHQIEKDSGEQLKRYECSVCYERFKTLSEKRTHQRFPYRKRRAKESEEEITMTVLRCCGCPKVFKTISELRSHQNELHFPQRVQSSNEELSIECGGCYKLFKNTALLNKHLRRAADKKLYACSKCTVARRSLKDLIEHEATHKGGGAFVCCGCRRGFETQDALEHHSLEEHSKRPKIYHNDESDTIRPFECKICYRKYKSARDLRGHQRFVYYDKIHTCDTCGKGFSQESSLSVHMARHKKEAKFPCPICGKKYKHEVMVRNCITRHERPKEHKCKICNVIFPAASNLYSHMVSHSEDRRYKCDVCGQMFKRSFHLRKHKITHTSEKNYPCEQCSARFCSTTELYKHQIRHTGVYPYECSICSKKVTTRQVYIKHYESHIDEKDKIFTCDVCPTQFSQEHFLSNHVKYTHRIEPQDKHWNDKFNRQGPSRMRGGPRMAGLKLSDSFDTSRCEAKIAETDNGDPLLLMETVDEEVVLTNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01462407;
- 90% Identity
- iTF_01462407;
- 80% Identity
- -