Basic Information

Insect: Topomyia yanbarensis
Gene Symbol: -
Assembly: GCA_030247195.1
Location: JASDBJ010000068.1:159866-161915[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.74 75 6.1 5.3 2 19 208 225 207 230 0.92

2 14 5.3e-06 0.00054 22.3 0.9 1 22 244 265 244 265 0.96

3 14 0.00096 0.097 15.2 2.8 1 21 270 290 270 292 0.94

4 14 0.44 45 6.8 1.7 2 23 300 322 300 322 0.91

5 14 0.0027 0.28 13.7 0.7 1 22 334 355 334 355 0.95

6 14 2.6 2.7e+02 4.3 7.7 1 23 359 382 359 382 0.95

7 14 0.22 22 7.8 1.5 2 23 393 415 392 415 0.89

8 14 0.00013 0.013 17.9 1.7 1 22 429 450 429 450 0.96

9 14 0.00032 0.032 16.7 1.3 1 23 457 479 457 479 0.97

10 14 0.0013 0.13 14.8 6.4 1 23 485 507 485 507 0.97

11 14 4.6e-06 0.00047 22.5 4.8 1 23 515 537 515 537 0.97

12 14 0.0038 0.39 13.3 2.8 1 23 543 565 543 565 0.97

13 14 1.1e-06 0.00011 24.4 1.0 1 23 571 593 571 593 0.97

14 14 1.2e-05 0.0012 21.1 1.9 1 23 602 625 602 625 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.74	75	6.1	5.3	2	19	208	225	207	230	0.92
2	14	5.3e-06	0.00054	22.3	0.9	1	22	244	265	244	265	0.96
3	14	0.00096	0.097	15.2	2.8	1	21	270	290	270	292	0.94
4	14	0.44	45	6.8	1.7	2	23	300	322	300	322	0.91
5	14	0.0027	0.28	13.7	0.7	1	22	334	355	334	355	0.95
6	14	2.6	2.7e+02	4.3	7.7	1	23	359	382	359	382	0.95
7	14	0.22	22	7.8	1.5	2	23	393	415	392	415	0.89
8	14	0.00013	0.013	17.9	1.7	1	22	429	450	429	450	0.96
9	14	0.00032	0.032	16.7	1.3	1	23	457	479	457	479	0.97
10	14	0.0013	0.13	14.8	6.4	1	23	485	507	485	507	0.97
11	14	4.6e-06	0.00047	22.5	4.8	1	23	515	537	515	537	0.97
12	14	0.0038	0.39	13.3	2.8	1	23	543	565	543	565	0.97
13	14	1.1e-06	0.00011	24.4	1.0	1	23	571	593	571	593	0.97
14	14	1.2e-05	0.0012	21.1	1.9	1	23	602	625	602	625	0.98

Sequence Information

Coding Sequence: ATGGATATACTAATTGAGCCGGATTGCTACAAAGTTTGTAGAATCTGCATGGAAAGCTGCGAGGATGACTTCGTATGCGTTTACGATGAATTCGAGGATAATATCCTCATGGACGTAATTGCTGAATGTGCCCGAGTTGAGATTAGAAAAGACGATGCACTGCCACGAAATGCCTGCCGAAATTGTGCAGAATATATGATTATAGCCTATCATATTATACAAAAGTGTCGCGATTCCGATCAGACTTTGAGATCGATATTTAAACATGAAATCGATTTGAGCAGCAGAAAAGAAGAGCCAATTTTCGGAGTAACCGACATCCACGAAACGGATATCAACCCAGCGGAATATGCATTCCTTCTGTCAGATGCATACGACAAAATCATGTTGGAGGATGTCAAGGGTCTAATTGCGGCGGACGCCAATAATGGTTTAGTAAACGAATTTCACTGCGAGGATCATTACCAAAGTATGTTAAATGAGGATCACATTATAACCACACATTCCAGCCAAGAAATCCCTACTCCGGTTGAGACGCTCCAATTGGATTATTCGGAACTAGCGGGAACAGAGGAAAATAGACATCCAGAGTTAAGTCAACATGAGGCTCACGCGACTAAAAAGTGTTGTGGATGCAAAAAGatatttgaaaatgaatttgatCTGAAGAACCATTGCGACTCAGTCCACCTGAGTGAATCAAGCAACGCTCATGATGATACGAGACCGTTCAAATGTCCCGTATGCTATAAATCGTTCTCCAATCAGCAACTTTTGAAAGAACACCAGCGAAGTGTAATTCGAAAGTATTTCTGTCGACAATGTGGTAAAGGATTCATGACACAAGCGAACTTAGAAAATCATTTAAAGTGCCACGTGTCCTCGCGAGAAACCAGAAGGTGCTGTGGTTGTCGCAAAGATTTTAAAAATGATACGGAACTTGCATTGCATTCCAATGAAGTGCACAAACCGGAGCAGACTTTCGATCCTATCAAACCGTTTGAATGCAACATCTGCTATCGACGATATCCTACTCGAAAGTCCCTTGTAAGCCACAAGCGAATGATTCAACAGCATCAATGCTCTCACTGTGgtgaattttttatgaaaaaactttttctatCTTTACATGAAAAGTCTTGTCATCCAAATGAACAAAAAGATGACAAGAAAAAGCGATGTTGTGGGTGTCGTTTAGAATTCCCAAATCAACATTCGTTGATAGAACATGCGATAGCTACTCATATCAATACTAATCCTGTACCGGTTGACCCGACGAAACCCTTTGAATGTAAAATCTGCACACGGCGTTTTCCCTCTAAATTGACTCTACGCAAGCATCAGAGAAAAATAAGTCAGGAGAAACGCTACTCTTGTGAAATTTGTGGTCGATCTTTCAATCGCGCCCATGATAAAGCGACCCACGAAACGACTCATTCCAATGAAATGCCCTACACGTGCCACATCTGTTCACGCCGATTCAAAAACAAACTCTACCTCAAAAATCACTTCAAGCTGCACGCAACTAGTGACTCGCGAAACTTTTCCTGTCACGAATGTGGTAAGTGTTTCCGAACGAAGGACCTGCTGAAAACTCATGCCATCAGTCATAGCGAGGAACGGAAGTATGCATGCCAGTTCTGTTCTGCGACGTTTAAGCGTGCCCAGTGCTTAAAGATTCACACCAAAGTGCATACACGAGAGAAAGCATTTGCTTGCACGGTCTGTTCCAAACGGTACGTTCAATCGTCCGATTTGAAGCGTCACATGTTGACCCATAATCCGGGCGAGGGCGGCAAGCCGTTCCAGTGTGAATACTGTCTGAAGCGATATCCCCGGAAGGATTATCTCAAAGTGCACATCCGGAAGCAGCACCTGGAGAAGGCCGATATGATTCTGATCGAAGAGGTGGCTCTTGAGTTTCAAGGAAATAGTGATGGAAGTGATTTTCTACTGATTTAA
Protein Sequence: MDILIEPDCYKVCRICMESCEDDFVCVYDEFEDNILMDVIAECARVEIRKDDALPRNACRNCAEYMIIAYHIIQKCRDSDQTLRSIFKHEIDLSSRKEEPIFGVTDIHETDINPAEYAFLLSDAYDKIMLEDVKGLIAADANNGLVNEFHCEDHYQSMLNEDHIITTHSSQEIPTPVETLQLDYSELAGTEENRHPELSQHEAHATKKCCGCKKIFENEFDLKNHCDSVHLSESSNAHDDTRPFKCPVCYKSFSNQQLLKEHQRSVIRKYFCRQCGKGFMTQANLENHLKCHVSSRETRRCCGCRKDFKNDTELALHSNEVHKPEQTFDPIKPFECNICYRRYPTRKSLVSHKRMIQQHQCSHCGEFFMKKLFLSLHEKSCHPNEQKDDKKKRCCGCRLEFPNQHSLIEHAIATHINTNPVPVDPTKPFECKICTRRFPSKLTLRKHQRKISQEKRYSCEICGRSFNRAHDKATHETTHSNEMPYTCHICSRRFKNKLYLKNHFKLHATSDSRNFSCHECGKCFRTKDLLKTHAISHSEERKYACQFCSATFKRAQCLKIHTKVHTREKAFACTVCSKRYVQSSDLKRHMLTHNPGEGGKPFQCEYCLKRYPRKDYLKVHIRKQHLEKADMILIEEVALEFQGNSDGSDFLLI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00949059;
90% Identity: iTF_01462372;
80% Identity: iTF_01462372;