Basic Information

Insect: Topomyia yanbarensis
Gene Symbol: -
Assembly: GCA_030247195.1
Location: CM058068.1:4183421-4185432[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 8.1e-06 0.00083 21.7 1.5 1 23 292 314 292 314 0.97

2 10 4.9e-06 0.0005 22.4 1.2 1 23 320 342 320 342 0.97

3 10 1.9e-05 0.0019 20.5 0.5 1 23 348 370 348 370 0.99

4 10 0.00062 0.063 15.8 5.0 1 23 376 398 376 398 0.99

5 10 9.7e-05 0.0099 18.3 0.4 1 23 404 426 404 426 0.98

6 10 0.00012 0.012 18.0 0.9 1 23 432 455 432 455 0.96

7 10 8.3e-05 0.0084 18.5 2.7 1 21 461 481 461 483 0.94

8 10 6.2e-06 0.00063 22.1 0.2 1 23 489 511 489 511 0.97

9 10 5.7e-05 0.0058 19.0 1.7 1 21 517 537 517 538 0.94

10 10 0.0012 0.12 14.9 6.9 1 23 550 573 550 573 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	8.1e-06	0.00083	21.7	1.5	1	23	292	314	292	314	0.97
2	10	4.9e-06	0.0005	22.4	1.2	1	23	320	342	320	342	0.97
3	10	1.9e-05	0.0019	20.5	0.5	1	23	348	370	348	370	0.99
4	10	0.00062	0.063	15.8	5.0	1	23	376	398	376	398	0.99
5	10	9.7e-05	0.0099	18.3	0.4	1	23	404	426	404	426	0.98
6	10	0.00012	0.012	18.0	0.9	1	23	432	455	432	455	0.96
7	10	8.3e-05	0.0084	18.5	2.7	1	21	461	481	461	483	0.94
8	10	6.2e-06	0.00063	22.1	0.2	1	23	489	511	489	511	0.97
9	10	5.7e-05	0.0058	19.0	1.7	1	21	517	537	517	538	0.94
10	10	0.0012	0.12	14.9	6.9	1	23	550	573	550	573	0.98

Sequence Information

Coding Sequence: aTGGTTCACTTTTGCAAACTGTGCCAATTGCTTCACAAAAGCATGGATTACATCGAGTGCGATGGAAGCAACGTATGGCTCTTGGAGTCGGTGTTCAAGCTAAAGATCATCCCCGTCAACGGTCGGGTAGAACCAATCTGCCAGAAGTGTATCGATAAGTACAACAAAGTCATGCGGCGAAAGCGAAAAGCCAACGGAGGCTTTCCGATTTCGCAGAATCAAATGTTTCCCATCACGACGACGACAACGGTAACTTCATCCACCCAGCTCGTGATTGCCGGATCGATGATGAACGAAGTGGTTCAAAGGCAGCGACCGGAACCACAGCTGACAATGGCTACCGCAGCTCAGCTGAGACAGGAGGATTCCTCCACCGAGATGGTGACAGCTAACAGTTTTCAGCTAAATATCACCGGAGCCGCCGCTGTCTATAGAACCACCGGGAAGGAAGGACGGGGTAGTTCCGAGGATGATAGTTCAGCAGATAAAAGTAGTGATGGGGAAGATGATgaagacgatgatgatgatgatgatgacggagCTGATGGTGGTAGCAGTGATTCTAGTGATTGCTGTAGTGACGGATCGTATGATAGTAGTTCCAGCTATAGCACAACGAGTAGCAGTGTAAGTTCAACCGAGACGCGAACGAGCCTTCGAATTGATGAAGCTGAATCGGAAAGGATGGAACAAATGGAGTCGAACGGTTCGTTGGAAATTGATGAGAATGCTGAAGATTCACTATCAGTAGATACTGGGGCAGTTGCAAAATCGGAGGTGGTAATGGAGCAAGAAACCACGATGAATTCGGACACAGGGAATGAAAACTCAAAAAagacgaaaaagagaaagaaacGTGAAAAGGGTCAACCGCATATTTGCGAAATTTGCAAGAGGGAATTCACGAAAGCAGTATATCTTCGGGTTCACATGAGGACTCATACAGGGGAAAAGCCATTTGCCTGTGATATTTGTTTTAAAAGTTTCACTCAGGCCTCGAGTTTGAATACCCACAAGAGATTGCATTCCAAGATTCGTCCTTTTACTTGTGAGATATGCGGAGCTGAATACACAAGTTCCGGAAACTTCAAAGTACATTTCCGGACGCATACTATGGAAAAACCCTACAAGTGTAGTTACTGTGAAAAATCTTTTAACCAGCACTCATCAAAGAAATTACACGAACGTATTCATAACAATGAGAAACCTTACATCTGCCAGGTCTGCTTGAAAGCTTTTTCCAACATCAGCAATTTGCACGTTCATGCACGAATTCACAACAACGAACGTCCGTACGAGTGCAACCTATGCGAAAAGAACTTCGCTCAATCACAGACGTTGAAAACTCACGTGCTCTCAAAGCATACCGAAAACAGACCGTTCCGGTGTGACATATGCCCGAGAACTTACGCAACGCAATCGAATTTAAATAACCACAAAAACTGCCATCTGTCAGAGAAACCATTCGTTTGCGACGAATGCGGTGGACGTTTTACCCAGAAGAGCTCCCTAAAGACACATATCCTAGCACACAAAAGCGAAAAGAATCATCACTGCCCCAAGTGTGGCAAAGGTTTCACAACGTTAGCAACTTTGAACACCCACCAGAAGTACGTTCGCTGCGACCGAGCGGGTGAACCTGCGGTCTATCACTGTACCTACTGTGTGCGGAAGTTTAAGCAGAAGACCCGATTCCGGACCCACATGAGGACGGTGCATCAGAAGGACATCGACGAGGTGCCGATGGTCGATGAGATACCGGCCGGCGAAGAGGAATCGGCGCAGCCGGTCGGCGAGAATACACCGGAGATGCTTGGTGGTATACTGAATGACGGGATGGAAGGTTTATCGTCGGCGCTGGTTACCGACTTTGAGGACCATTTTGCTGCACATAATTTCTAG
Protein Sequence: MVHFCKLCQLLHKSMDYIECDGSNVWLLESVFKLKIIPVNGRVEPICQKCIDKYNKVMRRKRKANGGFPISQNQMFPITTTTTVTSSTQLVIAGSMMNEVVQRQRPEPQLTMATAAQLRQEDSSTEMVTANSFQLNITGAAAVYRTTGKEGRGSSEDDSSADKSSDGEDDEDDDDDDDDGADGGSSDSSDCCSDGSYDSSSSYSTTSSSVSSTETRTSLRIDEAESERMEQMESNGSLEIDENAEDSLSVDTGAVAKSEVVMEQETTMNSDTGNENSKKTKKRKKREKGQPHICEICKREFTKAVYLRVHMRTHTGEKPFACDICFKSFTQASSLNTHKRLHSKIRPFTCEICGAEYTSSGNFKVHFRTHTMEKPYKCSYCEKSFNQHSSKKLHERIHNNEKPYICQVCLKAFSNISNLHVHARIHNNERPYECNLCEKNFAQSQTLKTHVLSKHTENRPFRCDICPRTYATQSNLNNHKNCHLSEKPFVCDECGGRFTQKSSLKTHILAHKSEKNHHCPKCGKGFTTLATLNTHQKYVRCDRAGEPAVYHCTYCVRKFKQKTRFRTHMRTVHQKDIDEVPMVDEIPAGEEESAQPVGENTPEMLGGILNDGMEGLSSALVTDFEDHFAAHNF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -