Basic Information

Insect: Topomyia yanbarensis
Gene Symbol: -
Assembly: GCA_030247195.1
Location: CM058070.1:18234293-18244489[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 4.6e-05 0.0047 19.3 0.3 1 23 98 120 98 120 0.98

2 11 0.0019 0.19 14.2 2.5 1 23 126 149 126 149 0.96

3 11 6.3e-06 0.00064 22.0 0.4 1 23 155 177 155 177 0.99

4 11 1.7e-06 0.00018 23.8 0.1 1 23 183 205 183 205 0.99

5 11 0.042 4.3 10.0 5.3 1 23 211 233 211 233 0.98

6 11 1.2e-05 0.0012 21.1 3.3 1 20 239 258 239 262 0.95

7 11 0.16 16 8.2 5.6 1 23 268 288 268 288 0.97

8 11 2.1e-05 0.0021 20.4 0.0 3 23 296 316 295 316 0.98

9 11 4.4e-05 0.0044 19.4 1.1 1 23 322 344 322 344 0.99

10 11 1.5e-05 0.0015 20.8 0.4 1 23 350 373 350 373 0.97

11 11 2.2 2.3e+02 4.6 0.9 1 19 379 397 379 400 0.81

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	4.6e-05	0.0047	19.3	0.3	1	23	98	120	98	120	0.98
2	11	0.0019	0.19	14.2	2.5	1	23	126	149	126	149	0.96
3	11	6.3e-06	0.00064	22.0	0.4	1	23	155	177	155	177	0.99
4	11	1.7e-06	0.00018	23.8	0.1	1	23	183	205	183	205	0.99
5	11	0.042	4.3	10.0	5.3	1	23	211	233	211	233	0.98
6	11	1.2e-05	0.0012	21.1	3.3	1	20	239	258	239	262	0.95
7	11	0.16	16	8.2	5.6	1	23	268	288	268	288	0.97
8	11	2.1e-05	0.0021	20.4	0.0	3	23	296	316	295	316	0.98
9	11	4.4e-05	0.0044	19.4	1.1	1	23	322	344	322	344	0.99
10	11	1.5e-05	0.0015	20.8	0.4	1	23	350	373	350	373	0.97
11	11	2.2	2.3e+02	4.6	0.9	1	19	379	397	379	400	0.81

Sequence Information

Coding Sequence: ATGAAACGTAATCGTCAAATCAAAACAACTAAAGTAACCAAAGCATCTTCCGGTGCCGGTAGGCCGAAGACAAAAACCATCAAGCAGGAGAGTAACAACAATGATCTGGTTGAGCCCAGTCCAGCTGAACTAACAGCTGTGATAGAGCAACCCATCCTACCGGAGGTCGAAGATCTAGACAAAGGCTTGCTCGTGCTGGCAGTTGAGAATGAACCGCTGTCGGGTGCATCATCAACCGGTGACATCAGTGGTGGCGAGCAGAAATCCAGCAGGAAAAAGAACCGCAAGCAGTACATCTGCCAGGTGTGCAATAAGAATTTTATGGGAGCGAATGATCTACGGAAGCATTTGCGCATTCACAACGACGAACGTCCGTACGCTTGTGCGCactgcaacaaccgattccgacagGCTGGATGTTTGAAGAACCATATCGCCTCTCAACACGGCACGGATACGTTGTACACGTGCGATCTGTGCGGGAAGACGTTTCCCATCAAGGAGCGGCTTCGTTTGCACATGAGAGTGCATACCGGCGAGAAACCGTACCAGTGTCCCATGTGTCCTAAGACGTTTGCCCGTGGTGGTCAGCTCACCCAGCATCTGGCCACCCACAATGGAATCCGGAGACACAAGTGCCCACACTGCTCGTCAGCGTTCTCGTGTGCGGCCAATCTCAAGATGCATCTCAAAAGTCACCTGGACATTCGTGATTATACGTGCCATATCTGCGGCAAAGGGTTCTACCGGCCAGATGCCCTGAAGAAACACCTGCTCTGCTATCACGCCAATCTGAAGGCTTTCCATTGCCAAATCTGCAACAAAATGTTCAAAGGTCATCTCCCGCAGCACATGCGAACGCACAAGATGATTCGTCCACATGGGTGTGCAGTTTGTGGGGCCGTTTTTTCGCAGCGATCGCAGCTGGTTGTCCATCAGCGCATCCATACCGGAGAGCGTCCGTACCGATGTCAGGTCTGCTGGCAGGCATTCGCACACTCAAGTGTATTGAAGTTACACATTCGCAAGCACACTGGAGAGAAACCGTTTGAATGTCCTATTTGTAGAGTTGGATTTTCCCAGCTACCCCATCTGAAGAAACATATGCTCTCTATTCACAACCAGGACAAATCATATCTGTGCAAAAACTGTAATGTTTTCTTCAAGACTAAGTTGGACCATCAAAATCATGTAGCGAGCTGTTCACCAGATGAGCAAGGACCAATCAGTGTGGAGGAAATCATCGATAGAAATGTCAAACACGCCAACAGTGGAGTTGATCCTCCGATGCCGTTATCGCACATGAGATTTCTGGTGGCTATTCTGCTGAAAAAGATCTCCACTGAAGAACGGCTGAAGGATCTCGGGTTCGACAAAAGATTAATCGATAACGTACTCGTCGATTCGTTAAAATGCGCTGGTCGCAAAGCATGCGACGATAGAGCGGTGGACCCAGCGTTCCGACTGAAGCAGAACGTGCAAGAACTGCTGGAATGGACAGTCCCTGCCAAGTATATGGAGGAGTTCAAGAAAGCCAATCGGAGCACCGAAGAGTTACTGGAGGATTTGACGAACTAA
Protein Sequence: MKRNRQIKTTKVTKASSGAGRPKTKTIKQESNNNDLVEPSPAELTAVIEQPILPEVEDLDKGLLVLAVENEPLSGASSTGDISGGEQKSSRKKNRKQYICQVCNKNFMGANDLRKHLRIHNDERPYACAHCNNRFRQAGCLKNHIASQHGTDTLYTCDLCGKTFPIKERLRLHMRVHTGEKPYQCPMCPKTFARGGQLTQHLATHNGIRRHKCPHCSSAFSCAANLKMHLKSHLDIRDYTCHICGKGFYRPDALKKHLLCYHANLKAFHCQICNKMFKGHLPQHMRTHKMIRPHGCAVCGAVFSQRSQLVVHQRIHTGERPYRCQVCWQAFAHSSVLKLHIRKHTGEKPFECPICRVGFSQLPHLKKHMLSIHNQDKSYLCKNCNVFFKTKLDHQNHVASCSPDEQGPISVEEIIDRNVKHANSGVDPPMPLSHMRFLVAILLKKISTEERLKDLGFDKRLIDNVLVDSLKCAGRKACDDRAVDPAFRLKQNVQELLEWTVPAKYMEEFKKANRSTEELLEDLTN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00400850;
90% Identity: iTF_00949058;
80% Identity: -