Basic Information

Insect: Topomyia yanbarensis
Gene Symbol: -
Assembly: GCA_030247195.1
Location: CM058068.1:190381372-190383305[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.00028 0.029 16.8 0.4 1 23 147 170 147 170 0.97

2 13 0.0013 0.13 14.8 1.0 1 23 275 297 275 297 0.99

3 13 5.2e-05 0.0053 19.1 1.4 2 23 300 321 300 321 0.97

4 13 9.9e-05 0.01 18.3 1.8 1 23 327 349 327 349 0.98

5 13 2.6e-05 0.0026 20.1 4.6 2 23 356 377 355 378 0.95

6 13 0.28 28 7.4 0.6 5 23 391 409 388 409 0.95

7 13 0.00043 0.043 16.3 3.2 2 23 415 437 414 437 0.96

8 13 0.066 6.7 9.4 0.9 2 23 450 470 450 470 0.97

9 13 0.00017 0.017 17.6 1.5 1 20 477 496 477 499 0.92

10 13 0.0025 0.26 13.8 0.2 1 23 507 529 507 529 0.98

11 13 0.00012 0.012 18.0 5.7 1 23 535 557 535 557 0.98

12 13 1.6e-05 0.0017 20.7 4.2 1 23 563 585 563 585 0.99

13 13 0.0012 0.12 14.9 5.4 1 23 591 613 591 614 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.00028	0.029	16.8	0.4	1	23	147	170	147	170	0.97
2	13	0.0013	0.13	14.8	1.0	1	23	275	297	275	297	0.99
3	13	5.2e-05	0.0053	19.1	1.4	2	23	300	321	300	321	0.97
4	13	9.9e-05	0.01	18.3	1.8	1	23	327	349	327	349	0.98
5	13	2.6e-05	0.0026	20.1	4.6	2	23	356	377	355	378	0.95
6	13	0.28	28	7.4	0.6	5	23	391	409	388	409	0.95
7	13	0.00043	0.043	16.3	3.2	2	23	415	437	414	437	0.96
8	13	0.066	6.7	9.4	0.9	2	23	450	470	450	470	0.97
9	13	0.00017	0.017	17.6	1.5	1	20	477	496	477	499	0.92
10	13	0.0025	0.26	13.8	0.2	1	23	507	529	507	529	0.98
11	13	0.00012	0.012	18.0	5.7	1	23	535	557	535	557	0.98
12	13	1.6e-05	0.0017	20.7	4.2	1	23	563	585	563	585	0.99
13	13	0.0012	0.12	14.9	5.4	1	23	591	613	591	614	0.96

Sequence Information

Coding Sequence: ATGAAGCTGTATCCGGTCCACGAAAACATCCCTATCTACCCAAGTTCGTACGACCTCTCGACGGCACAGGAGTGCTGGAATCTGAGCAATCGCAACCACTCCGGAAGTCACAATACCAGCAGCAACAGTAGCAATAACAATAGTACAGGAGCCCAAGCAGGCACCAGTACTGTCAGCGGAGCGCATCAGGATCGAAATGCATCACACCACCCATATCATCATATTTATCATCCTTCCCAGGGAATTAATTTCCAATTCCCCCAGCACGATCAACATCGACACGCTGGAGACAACGGTGACGATCAAGTGGATGACAAGTCGAAAATTCTTCTGGATTATGGTGCTGGCAATAGTGGAGTGAACTATCATGGCGTGGGGACTAGCAATGCTGGTATGTTACCTGATGAGTGCAGTCGAAAGTTAGCCAAGATTCGTTCGTATCGATGTTCCGAGTGTCCCAAATCGTTTGCACTTTTGAAACAACGACGCGCTCATATGCTATCGGAGCATAACATAGACGGTAAGGAAAATGTGTTGGGACCCATTACGGCTTCAGGTACGTCTGGTGTGTCGTCGACAATCACTTCCGGGTCGGCATTGGGTTTCTTTTCCGGACCTGGCGAAGGATCAAGTACGGCAATATTGAATAAGAAAATCAAGATAGAACCGCAACCGATGCTGATGAGCTATAGCTCTTTGAAGCAGGAACTAGAACAGAAGCAAGAGGAAGGAATTGCTGCTAGTGAACTACCAGGACCAAGTGGAATGCTTGCCAGTAGCAGCAACGTTCCTGCCAGTGGGGAAGTTCGCCGGAAACGAACCTATGTTTGTGGTACGTGCAAACAAGAGTTCGATAGATTTAAATTGTTTAATGCTCACCTGATGACTCACCCTGCCGAGTGTTATACCTGTGGCAGAAGCTTCAGGCATTGGCCAAATTTCGCTCTTCACATAAAGCGGCATTTGGGGATAAAAGACCATCAGTGCCGATTGTGCGGAAAGAAATTTGTGATCAAACAAAAATTGATTGAACATATGCGAGTCCACACGGGAAAAGCGCCCATCAAATGTCCCGACTGCGATCAACACTTCCGACGGTTTTCCAATTTGGCTCAGCATCGCAATCGGCATCATCTTAATAAGATACCTTCGAAAAAAGATTTTGTTTGCCACTGCGGGGAGGTATTCCAGTCTAAGGCCAAAATGGAGTGGCATAAGGAAATTCACGAAAATAGGCCTAAAAGTTGTCCCTTCTGCCGGGAAAAGTTCATCCACAAAAACAGCCTAACCAGACACATTCGACTATCTCACACCGAGAAATACGTGAAGCTAGAAATTGAAACCGAAACGTGTACGATCTGCAATCAACCGTACATCAAGACGAGCATGAAGCGACACATGGAGACGCATACCGAAGAGCGGATGGCATACTCATGCACGATTTGTAACAAGCTTTTCAGTACCAACTGGAACCTAAAGCAGCACAAATGGACACACGCCAATCCGACGCTGAAACCCTTCCAGTGTAATATGTGTTCAAGCGGGTTCGTCCGGGAGGCGGACTACATAACTCACATGAATGCCCACAAATCCATCCGACCGTACACGTGCAACCACTGCGGGTGTCAGTTTATCCGGAAGTACAACTGGATCCGGCACACGCGGGAACACGAAACGGACAAAAACTACACGTGCGAGATTTGTGGGCGTAAGTTCCACCGCAAGTACTATCTGACGGAGCACAAGCGGATTCACACCGGCGAGCGGCCGTTCTCCTGTAACATCTGCGGTAAGACGTCCTCGACCAAGACGAATCACAACAAACACATCAAGATCCATCACGCGCGGGATCCGCTGACGGCGGAAGGTTAG
Protein Sequence: MKLYPVHENIPIYPSSYDLSTAQECWNLSNRNHSGSHNTSSNSSNNNSTGAQAGTSTVSGAHQDRNASHHPYHHIYHPSQGINFQFPQHDQHRHAGDNGDDQVDDKSKILLDYGAGNSGVNYHGVGTSNAGMLPDECSRKLAKIRSYRCSECPKSFALLKQRRAHMLSEHNIDGKENVLGPITASGTSGVSSTITSGSALGFFSGPGEGSSTAILNKKIKIEPQPMLMSYSSLKQELEQKQEEGIAASELPGPSGMLASSSNVPASGEVRRKRTYVCGTCKQEFDRFKLFNAHLMTHPAECYTCGRSFRHWPNFALHIKRHLGIKDHQCRLCGKKFVIKQKLIEHMRVHTGKAPIKCPDCDQHFRRFSNLAQHRNRHHLNKIPSKKDFVCHCGEVFQSKAKMEWHKEIHENRPKSCPFCREKFIHKNSLTRHIRLSHTEKYVKLEIETETCTICNQPYIKTSMKRHMETHTEERMAYSCTICNKLFSTNWNLKQHKWTHANPTLKPFQCNMCSSGFVREADYITHMNAHKSIRPYTCNHCGCQFIRKYNWIRHTREHETDKNYTCEICGRKFHRKYYLTEHKRIHTGERPFSCNICGKTSSTKTNHNKHIKIHHARDPLTAEG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -