Basic Information

Insect: Topomyia yanbarensis
Gene Symbol: -
Assembly: GCA_030247195.1
Location: CM058068.1:6583226-6587033[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 2.8e-05 0.0029 20.0 1.6 1 23 208 230 208 230 0.98

2 18 4.5e-05 0.0046 19.4 0.7 1 23 236 259 236 259 0.95

3 18 0.0003 0.031 16.7 0.6 2 23 272 294 271 294 0.96

4 18 0.088 9 9.0 1.4 1 23 354 377 354 377 0.91

5 18 8.3e-05 0.0084 18.5 1.5 2 23 384 405 383 405 0.96

6 18 0.00049 0.05 16.1 3.1 1 23 411 434 411 434 0.96

7 18 0.048 4.9 9.8 4.5 1 23 446 469 446 469 0.98

8 18 0.004 0.4 13.2 0.4 1 22 515 536 515 538 0.90

9 18 9.1e-05 0.0093 18.4 1.5 1 23 577 599 577 599 0.96

10 18 0.013 1.4 11.6 2.4 1 23 605 628 605 628 0.97

11 18 0.0017 0.17 14.4 0.8 2 23 638 660 637 660 0.96

12 18 0.00022 0.022 17.2 6.4 1 23 811 833 811 833 0.97

13 18 0.0018 0.18 14.3 0.4 1 23 839 862 839 862 0.97

14 18 7.3 7.4e+02 3.0 0.6 1 10 873 882 873 896 0.83

15 18 0.049 5 9.8 3.2 2 23 1010 1031 1009 1031 0.96

16 18 1.6e-06 0.00016 23.9 3.7 1 23 1059 1081 1059 1081 0.98

17 18 0.0065 0.66 12.5 0.5 1 23 1087 1110 1087 1110 0.95

18 18 2.5 2.5e+02 4.4 3.0 1 15 1123 1137 1123 1146 0.81

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	2.8e-05	0.0029	20.0	1.6	1	23	208	230	208	230	0.98
2	18	4.5e-05	0.0046	19.4	0.7	1	23	236	259	236	259	0.95
3	18	0.0003	0.031	16.7	0.6	2	23	272	294	271	294	0.96
4	18	0.088	9	9.0	1.4	1	23	354	377	354	377	0.91
5	18	8.3e-05	0.0084	18.5	1.5	2	23	384	405	383	405	0.96
6	18	0.00049	0.05	16.1	3.1	1	23	411	434	411	434	0.96
7	18	0.048	4.9	9.8	4.5	1	23	446	469	446	469	0.98
8	18	0.004	0.4	13.2	0.4	1	22	515	536	515	538	0.90
9	18	9.1e-05	0.0093	18.4	1.5	1	23	577	599	577	599	0.96
10	18	0.013	1.4	11.6	2.4	1	23	605	628	605	628	0.97
11	18	0.0017	0.17	14.4	0.8	2	23	638	660	637	660	0.96
12	18	0.00022	0.022	17.2	6.4	1	23	811	833	811	833	0.97
13	18	0.0018	0.18	14.3	0.4	1	23	839	862	839	862	0.97
14	18	7.3	7.4e+02	3.0	0.6	1	10	873	882	873	896	0.83
15	18	0.049	5	9.8	3.2	2	23	1010	1031	1009	1031	0.96
16	18	1.6e-06	0.00016	23.9	3.7	1	23	1059	1081	1059	1081	0.98
17	18	0.0065	0.66	12.5	0.5	1	23	1087	1110	1087	1110	0.95
18	18	2.5	2.5e+02	4.4	3.0	1	15	1123	1137	1123	1146	0.81

Sequence Information

Coding Sequence: ATGGATGCTAGCGATTCCATTGCGAACGACTTGCAGGAAGTGCCAAATGGCGATCCGGCATCCTATTGTCGACTGTGCCTCTCTAATATTGACGTGGAGGCTCTTTTCCCCGATGGGCAAGGTGCCCGTCAAGAAGTGATCGATCGGATTCACGAATGCACTGGGATTCAGATCACAGTCGACGAAGATTATGCGTCGTCGGTATGCTGGTTGTGTTCGCTATCGCTGGAAGAATTCCAGCGCTTCCGAGAACGATGTCATCGTTACGATATTTTGATCCGTCAGAAACGGAAGGCGCCACAAGTTTTAGTCGGATCTGTTGCAGCTAATATTAGCTATCATGTGGATTCAGAAGACGACAACAGTTTCGATGACGACTACGATGGAGAAGGTGACGACGGTGACGGGCCTGGGTTACTTCGTATCACGTCGGTACAGGAGGGGTTTGATTCCGTTGAGGTACAATCAAACGAAAGTTTGCTGGAAGAGACTTCCTTTCAGCCGGATGAGGAAGATGTGAAACCAGATCAAGATACGTTGGCTTCTTATGCTGAGAATTTCAGACAACTCAACAATAGTTCTGAGACTTTAGATTCAAATGCGGAAACAAGTGAGCGCCGTTTCAAGTGCAATATGTGCAGCAGAAGTTTCAAAAACCGTGCGAATCTCTGGGAGCATAACCGACTTCACACCGGAAAGCTTCCATTTGACTGTAATGATTGCGGGACCACATTCAGTCGGGTTAAATCTCTTGAAGCTCACCGTGAAAAGTATCACTCCAAGAATTCGACCGAAGATCCGCCGTTGAGATTGAAATGCCAATTTTGTCCCCGAGTCTTCCCTCGCAAGGGTGATCGTACGCAGCACATGAAAATGGGTCATCCGGATCAGTACAATCCGAACGATAAAATGGATACCCCAAGCCCTGTAATCTCAAAGGATAGATCTACACCAGCAATAACATCATCAATGCCGGAGAAGTCCTCCCCTGTAGTGAAGAAATCAATTTCCACCAGCACTCCAACGCCAAGCCCTGTACCAGATTCGGCAGCTGCTCGTTTCTGCTGTAATTTATGCACCAAGAATTTCCAATCAGTTCAACAACTAGAAGATCACATCGGGCTTATGCATCCGAAAGATGGTATCCTCAAATGTTCCCTTTGTCCGAAGACGTTCAAGTCAAGACAAACGTTACGAATGCACATCCTAAATCATCAGGGAAAACTTCCTTACAAATGTGACGATTGTGGTTCTCGTTTCGATCGTCGCTTCTATTTGCAGAAACATCGGGATAAGTATCACGAAGGAGACGATTGTCAGGCAATTCAGTGTCGCTTCCGGTGTAAATTCTGTCCTCGAATATTCCACCGTAAAATTGATCGCAAAACCCATACTCGAATGGTTCACTTAAAGGAGATAAAGGTTAAGAAGGAAAAAATAGAACAAACCCTATCAGCTATTCAATGTCCTACGATGGAAGACGATGGCGAAGCATCCGTACACACAGAAGTTACCGTGAATGCTTCGCCAGCTGAACCTAGTTTCGAATGCCTTCAGTGCGGTGAACATTTCCCCACGTCAGCAATGCTTCAAGAACATACCGATGATCAgcataagaaaaaaatccaacaaCAGGACGTTAAACCAGTACTTCCGTTTCGAGCACCCCTAGCATCGAGAATGATGAAAATCAAACCAATTAGATCTTCGATGAACGTTCGGCGACCATATAAGTGTCCATATTGCCCCAAGACTTTCACACAAAATTATGTAATGAAGGAGCACACATTCATCCATACCGGCTCACTCCGTTACCGGTGCGATGAGTGCATGGCGATGTTCAATCGACCGCACTATCTGCGTGCACATAAGCAAAAATATCACGGCCAGAACAGCAAATTCAGAGCCCTCAAGTGCCGCTACTGCACGCGTAGCTTCGTTCGAAAACAGGATATCAAAATTCACGAGCGTATTGCCCATGGCGTTATCAGTGCCGGTAACGTTGAAAGAGAAATACTAGAGACGGAGCGCAACGGCGGAGAAAGTGATGGTGCTGCGGGTACCGAGGACAATGCTGATGGGGAACTGGAACCCGAAGAGGACGTTGACATGATCGACGAGGACGATGATGATTTAGGCGAAGAAGTGGACCTCGATGATGGCATTGGCGATATCGATGGCGGCGGTGATATCGATGACATAGGTGATATCGACGGCGATCAAGACGACGACGAAGATGGCGATGAGGTAGCTTTAGATGCAGAATCGATCGAAGATGATCCGGAGATTCGTGACGTTGTAGTTACGCTGGAACGCATTCCCGAAGATGTACTACAGACACTGGATAATTCCAACGAAGACGACGAGGCATCGGTCGATGTGGAATCCGCTGGAAGTGTTCCACCGACTCCGCGTCTAAACGTCACGCTACATCGGTGCCCAAAGTGCTTGAAGGTGTTCAAGACACGCAAATCATTAAAACATCACATGATCTACCATCAGAACCAGCTTCCCTTCTCATGCGATGAGTGTGGCGTTCAGTTTGCTCGGAATCGGCCTCTGCAGGTACACAAACAGCGGTACCATTCGGAAGATGCTCCCTACACTGGTAAACGGTTCAGCTGCGATTACTGTCCGCGAATATTCCTGCGTGATAGAGATAAAATGTTTCACCAGAAAACCGTGCATTCCATGGAAAAAAGCTATGCTAATCGAGATGAAAGTACTCCAGAACTGAAAAAGTCTAAGATCAAGAAACGTAAAGATTACGTTTGTGTGGTATGCTGTGATCGCTACGAATCGGAGAAATCTTGCCAGCGTCACATAAACGAATTCCATCCATCAGAGGCGCTTCCGAAGACCCCATCAGAATCTCCAGTACCAAGTGGACTTGCAACTCCGGTTAAACTGGAGCCTGGAACAGAATCAGATGATTACGGGAACTCTATCATTCCACATTCACTTCTGCCACCGTCAGCACCACCTCCCTTGATATTGAATCCTGGCCTTCGACCTTACAAACTGTGTCGCTGCACAACCTGTgtagccattttcaaaacccgCGAACACTGGAACGAACACATTCAAATGCATCCCAATGTGCGTCCGCACCACTGCGAACAGTGCCTGTTTAGGCGCAAAAGCCGCTCGAACCGGAAGGTGACGTCAGTCGGATTCAAGTGTCAGCACTGTCCGAAGGTGTTCACCAAGGCTAGCTCGTTGCGGACGCATCAGCGATTGCATACGTCCGAGCTGCGTTTCCCGTGCGACGAATGCGGCATGATGTACGACCGTTATCGGCTGCTACAGCTCCACAAGGAGAAGTATCACTCGGAAGACGCGATGCAGTATCCGACGCCGGCAACCTTCCGTTGTATGTACTGTCCAAGAACGTTTATGCGGCAGCGCGATTGCAACTTCCACCAGGAGTCGGTGCATGCGACCTAG
Protein Sequence: MDASDSIANDLQEVPNGDPASYCRLCLSNIDVEALFPDGQGARQEVIDRIHECTGIQITVDEDYASSVCWLCSLSLEEFQRFRERCHRYDILIRQKRKAPQVLVGSVAANISYHVDSEDDNSFDDDYDGEGDDGDGPGLLRITSVQEGFDSVEVQSNESLLEETSFQPDEEDVKPDQDTLASYAENFRQLNNSSETLDSNAETSERRFKCNMCSRSFKNRANLWEHNRLHTGKLPFDCNDCGTTFSRVKSLEAHREKYHSKNSTEDPPLRLKCQFCPRVFPRKGDRTQHMKMGHPDQYNPNDKMDTPSPVISKDRSTPAITSSMPEKSSPVVKKSISTSTPTPSPVPDSAAARFCCNLCTKNFQSVQQLEDHIGLMHPKDGILKCSLCPKTFKSRQTLRMHILNHQGKLPYKCDDCGSRFDRRFYLQKHRDKYHEGDDCQAIQCRFRCKFCPRIFHRKIDRKTHTRMVHLKEIKVKKEKIEQTLSAIQCPTMEDDGEASVHTEVTVNASPAEPSFECLQCGEHFPTSAMLQEHTDDQHKKKIQQQDVKPVLPFRAPLASRMMKIKPIRSSMNVRRPYKCPYCPKTFTQNYVMKEHTFIHTGSLRYRCDECMAMFNRPHYLRAHKQKYHGQNSKFRALKCRYCTRSFVRKQDIKIHERIAHGVISAGNVEREILETERNGGESDGAAGTEDNADGELEPEEDVDMIDEDDDDLGEEVDLDDGIGDIDGGGDIDDIGDIDGDQDDDEDGDEVALDAESIEDDPEIRDVVVTLERIPEDVLQTLDNSNEDDEASVDVESAGSVPPTPRLNVTLHRCPKCLKVFKTRKSLKHHMIYHQNQLPFSCDECGVQFARNRPLQVHKQRYHSEDAPYTGKRFSCDYCPRIFLRDRDKMFHQKTVHSMEKSYANRDESTPELKKSKIKKRKDYVCVVCCDRYESEKSCQRHINEFHPSEALPKTPSESPVPSGLATPVKLEPGTESDDYGNSIIPHSLLPPSAPPPLILNPGLRPYKLCRCTTCVAIFKTREHWNEHIQMHPNVRPHHCEQCLFRRKSRSNRKVTSVGFKCQHCPKVFTKASSLRTHQRLHTSELRFPCDECGMMYDRYRLLQLHKEKYHSEDAMQYPTPATFRCMYCPRTFMRQRDCNFHQESVHAT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -