Basic Information

Insect: Topomyia yanbarensis
Gene Symbol: -
Assembly: GCA_030247195.1
Location: CM058070.1:137085996-137092634[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 22 0.1 10 8.8 2.6 1 23 241 264 241 264 0.91

2 22 0.0033 0.34 13.5 5.9 1 23 270 292 270 292 0.98

3 22 0.031 3.2 10.4 0.8 1 23 348 370 348 370 0.98

4 22 0.0005 0.05 16.1 2.4 1 23 377 399 377 399 0.98

5 22 0.0015 0.16 14.5 0.4 1 23 411 434 411 434 0.97

6 22 1.6e-05 0.0017 20.7 0.4 1 23 461 483 461 483 0.97

7 22 0.15 15 8.3 1.0 1 23 497 519 497 519 0.98

8 22 0.0075 0.76 12.4 4.1 2 23 562 583 562 584 0.95

9 22 0.0082 0.83 12.2 3.5 1 23 590 612 590 612 0.97

10 22 0.0052 0.53 12.9 2.8 1 23 641 663 641 663 0.99

11 22 0.033 3.4 10.3 0.5 1 23 758 780 758 780 0.98

12 22 0.023 2.4 10.8 5.7 1 23 812 834 812 835 0.94

13 22 0.00027 0.027 16.9 6.1 1 23 841 863 841 863 0.98

14 22 0.0057 0.58 12.7 0.3 2 23 925 946 924 946 0.98

15 22 0.053 5.4 9.7 6.9 2 23 971 992 971 993 0.95

16 22 0.0051 0.52 12.9 2.2 1 23 999 1022 999 1022 0.94

17 22 1.6e-05 0.0016 20.8 0.3 1 23 1053 1075 1053 1075 0.99

18 22 0.00034 0.034 16.6 0.9 2 23 1096 1117 1095 1117 0.97

19 22 0.35 35 7.1 3.7 3 23 1223 1243 1221 1244 0.94

20 22 0.00029 0.029 16.8 2.7 1 23 1250 1273 1250 1273 0.97

21 22 0.0074 0.75 12.4 3.0 1 23 1290 1313 1290 1313 0.96

22 22 0.14 14 8.3 1.5 1 23 1319 1341 1319 1342 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	22	0.1	10	8.8	2.6	1	23	241	264	241	264	0.91
2	22	0.0033	0.34	13.5	5.9	1	23	270	292	270	292	0.98
3	22	0.031	3.2	10.4	0.8	1	23	348	370	348	370	0.98
4	22	0.0005	0.05	16.1	2.4	1	23	377	399	377	399	0.98
5	22	0.0015	0.16	14.5	0.4	1	23	411	434	411	434	0.97
6	22	1.6e-05	0.0017	20.7	0.4	1	23	461	483	461	483	0.97
7	22	0.15	15	8.3	1.0	1	23	497	519	497	519	0.98
8	22	0.0075	0.76	12.4	4.1	2	23	562	583	562	584	0.95
9	22	0.0082	0.83	12.2	3.5	1	23	590	612	590	612	0.97
10	22	0.0052	0.53	12.9	2.8	1	23	641	663	641	663	0.99
11	22	0.033	3.4	10.3	0.5	1	23	758	780	758	780	0.98
12	22	0.023	2.4	10.8	5.7	1	23	812	834	812	835	0.94
13	22	0.00027	0.027	16.9	6.1	1	23	841	863	841	863	0.98
14	22	0.0057	0.58	12.7	0.3	2	23	925	946	924	946	0.98
15	22	0.053	5.4	9.7	6.9	2	23	971	992	971	993	0.95
16	22	0.0051	0.52	12.9	2.2	1	23	999	1022	999	1022	0.94
17	22	1.6e-05	0.0016	20.8	0.3	1	23	1053	1075	1053	1075	0.99
18	22	0.00034	0.034	16.6	0.9	2	23	1096	1117	1095	1117	0.97
19	22	0.35	35	7.1	3.7	3	23	1223	1243	1221	1244	0.94
20	22	0.00029	0.029	16.8	2.7	1	23	1250	1273	1250	1273	0.97
21	22	0.0074	0.75	12.4	3.0	1	23	1290	1313	1290	1313	0.96
22	22	0.14	14	8.3	1.5	1	23	1319	1341	1319	1342	0.95

Sequence Information

Coding Sequence: ATGATGGAAAGTCGGGGGCCAAAAACATCCGCCTGTACCACCATCATTACCAGCAGCAGTAATAGCAACAGCAACAATAATGCAACAAACATTAGATCAGGGGTAGCAGGAAGTGGGGAGTTTGGACGTATTGGAACTCCCGGAGGAATCGCTGTTCCTCAATCAGTGAGTGCATTATGCAGGATTTGCATGTTTGATTTCCGGTTGGACGGAGAAAAAATGCTGGAATCTCTTTCCCGGACGACGGTCGATTCGAGGACTTTGTACTCAATGTTGATGAGTATCTGCACACCGCTGGCTCAAGGGAATAATGACGGTATGCCGGACAAGATCTGTGGCGGGTGTAAAACAAAACTTGTACAGGCATATAAATTGTATGAGACGTGCTTGAAAAGTGATGAGAAAATTAAGAAACTGTTACAAACTCAACTGCCTGGAGGAATCCATGTAAAACAGGAAATCATtgaggatgatgatgatgtggAATTGGCCAATGTAGAACTTTACTGCGACGCTCAAGTAAAAAGGGAGGATTCATTCGGACATAATTACCAGTTTGAAGATCACTTGTACGAATCAGCTTTGTCGAACCTGAGAATTCAGTCCGTGCATAATGGGCCGGAAGTGCTCGTGCAGTTACAGGAACATAGTCTCCCACAGGAGGCGCCCCCAAAACCAACCTTTGAATGCGAAAAGTTTGTCAAAGTGACACCAAAAGGACACACATGCATGCTGTGTGGTAGAGACTTCAAGTATTTCAGTTATTATAAACAGCACGCACTGGCCCAACATGACCCAGAAAAACCACACAAGTGCGAGCAATGCAAATACACATTTAAAACCGAACAACGCCTGTTTCTACACATGAAAACCCACCTTGAAATGGAAACTCTTCCATTGGCAATCGAACATGCGGATATTCCGGAACCGGATACTGAGCAGGACCAAGAACACGAACAAGACCAGATGGAAGATATTATCAACGACGAGGACGCCACTGATGCAAATATATCCATTAATCCGGAATCAGGAGAGAAAGTTTACACATGTCTTATTTGCCAGAAGCAGTTATCAACGCTACCCCTGTATAACCGGCATCGCACAGTGCACACTGTCCGAGGTCGTCCATACGAGTGCGATATATGTCACTATCGTTTCGCAATGAAATTCAGTTACAATGCACACATGCTACGTCACGAACAAGGAAAAGATCCTGCCCAACCAGCAACATTTAAATGTACCGAATGTGACGAGAGTTTCCTAAGGCGGAAACTATTGAATATCCATGTGGCCACTGAGCACGAGAATATGCCAGCACCACTGAACAAAACAGCTCCTGCAGCGATTCTAACTAGTAATATATCGGATGGACGTCACGGTCATCCCTGTCCAATCTGCCCGGAGACGTTTAATCGGGAGTCTGTGCTAAACAATCACCTAAAAACGCATGAGCTCGAGGCTGCGCAACTCAAACACTCTGAGGTTTATTATGTATGCACTGTCTGCGGAATGGAATGCGAAACACGTCAAATTTTCGATAATCACATTAGAACCCATGGCGATGTTCAGTTTTTAAATAATGCTAACCAATCGGTAGACGCCGATGTCAGCGACGACGATCACGCACAGAATGGTGATGAATCAGTTGCTACCAGCACCAAATCGGACGGGAAAGCCGGGGCTAAGTGCGAGCTCTGTTCTAAAACATTCCCATACGCTTGTAACCTAAAGCAGCACAAAATCATTCATCACTCCGAATTGAAACCACACGAATGCTCCGTCTGTCATTACCGGTTTGAATACGAAGGCACACTGCTCCGACACGTGCAGAAACATTCCAAACAGGAAACTAGTGCACCACCGGTTGCTACTATTCCGACAGAGGACCTAATTGTTGCTCCTCCAGGAGCCTCCCTGATCTACAAGTGTAAGCTCTGTTCTGCACGCTTTCAAAAGCAGAAATCAATGCAATGGCATTTGAAAACACACCGGTCGATCGTTGCTAATGAGGGAGCGAGTGTACAAGAGTTGGAACAAAGTCTTAACCTACCAGCGCCAGCTCAACCAGTATTGAAACGTTCTTCATCGCCCTCAAGTACGAATGCGGCAGTTAAGGCGCTCCAATCCGCGGACACGGCTGCTTCACCTGCCGCTACATCGACGCCAGCTCGTTCGAAATCTCCTGGTGCACCAACACCCACTAGTGCCAAGTTGGAGCTGAAGGTACAACCGCAAACAGTTGACAAACCCGCTAGCAGCACACCGAAGATGTTCAAATGCAATTACTGTCCACAGAATCTAGATTCGGAGGATGCTTACTTTCAGCATCTCAAAGGACATCGCGTGCGCCCGAATGCAACCGATCCTCTTCAATCGGAGAGTGATTCTCCGCCGTTGAAAAAGAAACGGGCCTGGATTCGTTCGGGCGATCATCACCGTTGCAACTTGTGTCTCAAGCAGTTCACGTTCCGCAGTCAACTTCAGCAGCACACTGCTTTGCATCACCAGCCAGGAAAACCATACGAATGCAATAAATGTCACTACAGTTTCGTACACAAACTCAATCTTAAAAGACACGAGCTGACACACTTGGAGGAGGAACGTTTAGCTAGTGAGGACGATCCATCCATTCAGCTTCTGGAGGATGAAGGTTTCAATGCGGAACTGGAAGAGGTTGACGAGCCGGTGCTGGAGGAGGCTTCTACGAACAAACCATCAGAGGACGGCAACGAACCTCTAGCAAACGAAGCAACTGGAGTATCAAAGAAGAACAAATGCGTTGTCTGCTCGACTGTGTTTCAACGGGAAAATGAACTAATCGAACATCTCAAAACTCACATAGAGCGAATCAAAGTGTCCAAACAAGAGACacaaaccgcaaaaaaaattctatctGATGACAGTGATCGAAAGTGCAAACTATGTCTGAAGGTGTTTAAGTTCTCCTGCCAACTGAAGCAACATGTTCAAATGCATCACGCCAAAGACAAGCCTTTCGAGTGCAACATTTGCAAATATCGATTTGAATTTAAGGGACATATGATTCGTCACAAGGCCATAAATCATGCCGAGGAGGTAGCCGCCGAAGAAGCAGAGATGGACGAACTTCCGGCAAAAATCACTACCCCGACGGTTAAATTAGACGGCTCCGAAGTTTATCAATGCCCGGTTTGTCCGTTAAATTTCGTTAAACAACGGTCCCTCACGTGGCATTTGAAAACTCACACTACTCGACGGTCAAGGCATGATGACGGCATAGCATCCACTTCATCCGGCGAGATAATGCAGTGTCGTTTCTGCTCCCGTACTTTCCGTGATGTATACGAACTAAAAGCACACATGGTTACTCACGTCGGCAGTGGAGCAGCGACGTCCGCTACCTTACCTGATGCAGAACATTCTTTATTCGGTTCCGGCTTGGATATGATGCTGCAAGACTTCCCGGACAGTATGGAGAATACCGCTACTGATCCACTATTTGACGAATCCAATCTGGAGTTGGTACTGGAAGATAACTTCGACAATGATGATCTCGCGTTCAACATGCCCTACCATGATACACCACCGCTTCCACCAGCCAAGCGAAGTCTTCCAAGTAATGAAAACTCAATTTATGACATGGCTGAACCCGGTGCGTCGACTACGACAGCCAAAAGCAAAATCATCTGTGAGTTATGCAAGAAAGATTTTCTCTACTTGTGCAATTTGAAGCAACACATGCAGCTTCACCACGCAAAGGAAAAACCCTTCGAGTGTAAAATTTGCTTCTACCGCTTTGAATACAGTGGCCATCTTGTGCGTCACATTCGACAGAACCATGACAAAAGCCTGGCTGAAGATGCAGCTGGCGAAGCAAGCGAGAAGAATTTTGTCTGTACCTTCTGTTCAGAACTTTTTgagcaaaaatCTCAGCTAAATACACATCTTCACATGTACCACAAAGGGGAGAAGCAGTTCAAATGCGACTCTTGTCCTGCCTCTTTTGCTTACAAAAAAGCGTACGATACTCACCGAGAAGAACATCACACTCACAAACGTTCAGATTCTTCTACCGCTACTACATCTGGTTCTTCTACTAGAGTTTCAAGTGGTGCTCCCACTAGTTTCTCCTGCAACTTCTGCAAGAAGACGTAA
Protein Sequence: MMESRGPKTSACTTIITSSSNSNSNNNATNIRSGVAGSGEFGRIGTPGGIAVPQSVSALCRICMFDFRLDGEKMLESLSRTTVDSRTLYSMLMSICTPLAQGNNDGMPDKICGGCKTKLVQAYKLYETCLKSDEKIKKLLQTQLPGGIHVKQEIIEDDDDVELANVELYCDAQVKREDSFGHNYQFEDHLYESALSNLRIQSVHNGPEVLVQLQEHSLPQEAPPKPTFECEKFVKVTPKGHTCMLCGRDFKYFSYYKQHALAQHDPEKPHKCEQCKYTFKTEQRLFLHMKTHLEMETLPLAIEHADIPEPDTEQDQEHEQDQMEDIINDEDATDANISINPESGEKVYTCLICQKQLSTLPLYNRHRTVHTVRGRPYECDICHYRFAMKFSYNAHMLRHEQGKDPAQPATFKCTECDESFLRRKLLNIHVATEHENMPAPLNKTAPAAILTSNISDGRHGHPCPICPETFNRESVLNNHLKTHELEAAQLKHSEVYYVCTVCGMECETRQIFDNHIRTHGDVQFLNNANQSVDADVSDDDHAQNGDESVATSTKSDGKAGAKCELCSKTFPYACNLKQHKIIHHSELKPHECSVCHYRFEYEGTLLRHVQKHSKQETSAPPVATIPTEDLIVAPPGASLIYKCKLCSARFQKQKSMQWHLKTHRSIVANEGASVQELEQSLNLPAPAQPVLKRSSSPSSTNAAVKALQSADTAASPAATSTPARSKSPGAPTPTSAKLELKVQPQTVDKPASSTPKMFKCNYCPQNLDSEDAYFQHLKGHRVRPNATDPLQSESDSPPLKKKRAWIRSGDHHRCNLCLKQFTFRSQLQQHTALHHQPGKPYECNKCHYSFVHKLNLKRHELTHLEEERLASEDDPSIQLLEDEGFNAELEEVDEPVLEEASTNKPSEDGNEPLANEATGVSKKNKCVVCSTVFQRENELIEHLKTHIERIKVSKQETQTAKKILSDDSDRKCKLCLKVFKFSCQLKQHVQMHHAKDKPFECNICKYRFEFKGHMIRHKAINHAEEVAAEEAEMDELPAKITTPTVKLDGSEVYQCPVCPLNFVKQRSLTWHLKTHTTRRSRHDDGIASTSSGEIMQCRFCSRTFRDVYELKAHMVTHVGSGAATSATLPDAEHSLFGSGLDMMLQDFPDSMENTATDPLFDESNLELVLEDNFDNDDLAFNMPYHDTPPLPPAKRSLPSNENSIYDMAEPGASTTTAKSKIICELCKKDFLYLCNLKQHMQLHHAKEKPFECKICFYRFEYSGHLVRHIRQNHDKSLAEDAAGEASEKNFVCTFCSELFEQKSQLNTHLHMYHKGEKQFKCDSCPASFAYKKAYDTHREEHHTHKRSDSSTATTSGSSTRVSSGAPTSFSCNFCKKT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00949039;
90% Identity: -
80% Identity: -