Tyan040405.1
Basic Information
- Insect
- Topomyia yanbarensis
- Gene Symbol
- -
- Assembly
- GCA_030247195.1
- Location
- CM058069.1:431777539-431778971[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 5.2e-05 0.0053 19.1 1.6 1 23 21 43 21 43 0.96 2 13 1e-05 0.001 21.4 1.8 3 23 51 71 49 71 0.98 3 13 0.0005 0.051 16.0 1.0 2 23 78 99 77 99 0.96 4 13 0.29 30 7.3 4.8 1 20 105 124 105 125 0.94 5 13 2.3e-05 0.0023 20.3 2.0 1 23 133 155 133 155 0.98 6 13 0.0013 0.13 14.7 1.5 1 23 161 183 161 183 0.98 7 13 0.001 0.1 15.1 0.9 1 23 189 211 189 211 0.98 8 13 6.7e-05 0.0068 18.8 3.5 1 23 240 262 240 262 0.98 9 13 0.00084 0.086 15.3 2.3 1 23 268 290 268 290 0.97 10 13 0.00038 0.039 16.4 0.6 1 23 295 317 295 317 0.98 11 13 9.9e-06 0.001 21.4 1.0 1 23 320 342 320 342 0.99 12 13 1.4e-06 0.00014 24.1 1.5 1 23 348 370 348 370 0.99 13 13 2.4e-05 0.0024 20.2 3.0 1 23 378 400 378 400 0.97
Sequence Information
- Coding Sequence
- ATGCAAATAGCGAACAGCTATGACCAAGTACAAGAGAACATTTTACAAGTTTCAAAATCTCACAACTGTGAAATCTGCGGCAAAGGGTTCAGCAAGGATAGTAAACTAAAAGAACACCGAAACATCCACACCGGTGAAAGACCGTTCGGGTGTAATTTCTGTGATAAAACATTTTCTACCCGTAGTACCCTGTCGGTTCACAAACGCATTCATTGGGGGAACAAGCCACTTATATGTGAGGTGTGCGATGAAGAATTTCAGCAAAGGACCCATTTCGTGATACACCAGAAGACGCACATAGGAGAAAAGCCCTTCAAATGCGATGCCTGTGGTAGGAAGTTTGCTAAGAAATCTTGCATGTATAATCATAAGCATTGTAGTAAAAGTGAACGACCTTTCAAATGTGAAATATGTGGCAAAAAATTCTCGTTCAATTTTGATATgcttcaacataagcgaatcCACACCGGCGAAAAACCACACAAATGTGATGTGTGTGGGAAAGATTTTCGCTTGAAATTTGTTTTGGTTGACCATAAGCGTATTCATACTGGCGAAAAACCATACGAGTGTAACATTTGTGCTAGAAAGTTCCGTACACGTGCTATCCTGAACAATCACAAAATGACACATAACAGTGGAAATTCATATGAATGTGGAACGGATTCAGAAATAATTGTTGAGAAATCCGTTCAATCTCAAGGTAGAATACGTCCTCACCAGTGCAACATTTGCAACAAAAAATACATGCGAAATACAGATCTTATGCGACACAGCCGCGTCCATAGCAACGCTAAACCATACGTTTGTGAGATTTGCTTTAAGCATTTCACCTATTCCGTAGGTCTATTAAGGCATGCTCACATCCACAACGAGGAAATATTTAAATGTAACGGTTGTATAAAGCAGTTCAGCAGCTACGAAGAACTAAAGGCACACCGCCTAATCCATGACACTTACGAGTGCCCGACGTGTAGGAAAAGATTCAGAAGCAACAGTATTCTACAACAGCACATCCGAGTTCATACCGGGGAAAGACCGTACACTTGTGACATTTGCAGCAAAAGTTTCAAGACACTCAGTACACTTTCCGCACATAATCGCACACACATCGACCACCCAGTTCGACCGTTTCACTGCGATGTGTGTGGTGCTGAATTCACTCGAAAAACAAGCCTGAATCGACACAGGAAGAATCATGGATTGCCACCGGCCAGTGATCCGGCAAGGGAATTGAAACTGAATGATGTAGAAGGAAACGTACGCGGGCATCAGAACGTAAACGTGGATGGGGAAATCGAGGAATCCCCACTGAAAACAGAATTCTTTGAGGTTCACGAAGAGCGATTAGCTGACGCAATACAGGATTAA
- Protein Sequence
- MQIANSYDQVQENILQVSKSHNCEICGKGFSKDSKLKEHRNIHTGERPFGCNFCDKTFSTRSTLSVHKRIHWGNKPLICEVCDEEFQQRTHFVIHQKTHIGEKPFKCDACGRKFAKKSCMYNHKHCSKSERPFKCEICGKKFSFNFDMLQHKRIHTGEKPHKCDVCGKDFRLKFVLVDHKRIHTGEKPYECNICARKFRTRAILNNHKMTHNSGNSYECGTDSEIIVEKSVQSQGRIRPHQCNICNKKYMRNTDLMRHSRVHSNAKPYVCEICFKHFTYSVGLLRHAHIHNEEIFKCNGCIKQFSSYEELKAHRLIHDTYECPTCRKRFRSNSILQQHIRVHTGERPYTCDICSKSFKTLSTLSAHNRTHIDHPVRPFHCDVCGAEFTRKTSLNRHRKNHGLPPASDPARELKLNDVEGNVRGHQNVNVDGEIEESPLKTEFFEVHEERLADAIQD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -