Tyan016482.1
Basic Information
- Insect
- Topomyia yanbarensis
- Gene Symbol
- -
- Assembly
- GCA_030247195.1
- Location
- CM058069.1:21635752-21638978[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 6.5e-05 0.0066 18.8 0.6 2 23 112 133 111 133 0.96 2 18 0.028 2.8 10.6 6.6 1 23 139 161 139 161 0.98 3 18 0.043 4.4 10.0 4.0 1 23 167 189 167 189 0.84 4 18 0.26 26 7.5 0.1 2 23 195 217 194 217 0.95 5 18 0.00052 0.053 16.0 5.1 1 23 223 245 223 245 0.98 6 18 0.00064 0.065 15.7 0.5 3 23 250 270 249 270 0.97 7 18 0.0051 0.52 12.9 1.1 1 20 277 296 277 298 0.94 8 18 0.5 51 6.6 5.9 1 23 303 326 303 326 0.98 9 18 0.00013 0.014 17.8 0.3 2 23 640 662 639 662 0.94 10 18 0.0044 0.44 13.1 0.0 1 23 672 694 672 694 0.95 11 18 0.00013 0.014 17.9 2.5 1 23 700 723 700 723 0.96 12 18 4.9e-05 0.005 19.2 0.6 2 23 729 750 728 750 0.96 13 18 0.091 9.2 8.9 1.3 1 23 756 778 756 778 0.91 14 18 4.9e-05 0.005 19.2 1.3 1 23 783 805 783 805 0.98 15 18 0.00012 0.013 18.0 0.6 1 23 811 833 811 833 0.98 16 18 0.0048 0.49 13.0 0.3 2 23 840 862 839 862 0.95 17 18 2.6e-05 0.0026 20.1 1.4 1 23 875 897 875 897 0.94 18 18 6.2 6.3e+02 3.2 6.2 1 23 903 927 903 927 0.94
Sequence Information
- Coding Sequence
- ATGCCTCGAAGACGTGCAGCAGCTTCGAATTTATTAGCTAAGCAATTGGGTCATACGGAAAATTTTCAAGAGTCTAAGCAAACTGAAGGAGAAGATGGTCCTGCTCTAAAGCAATCAATCAAGGGTCGCGGTAGAGGTAGACCGAGACATCCTCGTCCTGATGTACTGGTTCCTGCAGAGGAAACTAGGATGCCAGATTCAAGTAGGTCTTTGGATTCGAGAGATGCAACTGACGATGAGTATCGGCCAACCGGAAGTGCGTCGGGTGAAGAAACTGATCTAAAGGAAAGGAAAAAGGTTACCCGTCATAAGGATGGCAGCAAGTCTAACGTGACGTGTGAAATCTGCGGAAAATTTTTCAAGTTTCGAGCCACTCTGAAGCAGCATGAACAGATTCACTATGGAATCAAAGAATTCGAATGTCACGTATGCCACACACGGTTTCTGCACAAGGGAACACTGAAGGTGCACCTTCGATTGCATACTGGAGAAATGCCGTACAAGTGTCCGCACTGCCCGAAGCGTTTTCGCGGGCAGACTGCCTTAGATTGTCACGTGTTTAGGCATACTAAACAGGGAACTAAATGTCCCCAGTGTTCGTCGATTTTTGCTACACCTTCTATTGTAAAGCAGCACATTCGAGAGGTTCACACGACAGAACGGTCACATACGTGCCAAATCTGCGGTGTAACATATAAGCATCGCAAAAGTCTGCGATTGCACCTGCGTAACCACCAGAAACGAATCTGTCCGGATTGCGGCAAGGTTTTTCACAGTATATATGCGATGATGACTCACCGGAAGATTCACGCACAGGATCACTTCCAGTTTAAGTGTACCTATTGTGatcgaaagtttgaaaaggatgAGGAATTGCAGTCCCACAACAAACTTAGATGGAGAGCTTACCAGTGCGAAATGTGCTGCCACAGTTTTAACAAGGCTGAATATCTAACGAACCACAATCGACGGAACCACTGGAAGGAAATGGGCCTGGAACAGTTGAAGGTTGCGCCTCCGAAGAACGGATGGAACAGAAAAGGTGTACCGAAGCCGAAAAAAGTCGAAGGACAGAAAATTCATTCTTCAGCTGAGATTACTGAAAGTATGGTATATGATAGACCTCCAGAGACACAACAGGCGATTTATAATTCTATGGAAAACAATCAATCGATGAGCGTACCTATGATGCAGTCTATGGAATCTTTCGGTACAGAATCTTATCACACTGAAATCGCCGAACCAGGCGTACTCGAAAGGTCATCAACCATAACAACAATTACAACAGAAATAAGACCAATTAGTCCAAAGTATCCAGCAGACATAAAATCATGTGACGAGTTTCCAGGTAATGACGGAATAGTTGAAACGTTAGAAGAACAAGAGTCTGATTTCGAATATGAATGCGCTGCGAACGATGATGTCGGAGTAGCTGAAGAATCAGACTCAGACCAAAGTTTAATCGGCCGGATTAAAGTCGAAGAAAGCACACTACCGGAGGCGTCGGAGCCAACTCCTTTGAAAGTTGAGTTTCCGGATCAGGACGATTTAGAACAGCCTTCTGTAATCGAAGCAACTGTGACTAAGGTTGAAGTTTTGGAAGACTTCCAGAAGAAGGAACCTGTGTCCGATAGTGAAGATGAAGTCCCGCTGGTGAATTTCCTTCCGAAAGGCCGTACTAGTCGACATGTTTCACAACCCTTGTCGAAAACTTCAAATAAGAGTACTAAGCGTAAAACACGGAAAGCAGACGGCCTGTCTTCCAACGGAGAGTCGTTACCCATAAAAAGGGAACCAATCGATGGCACCGATGACAACCTTAATTCGACGGAAAAAGAAGGGAAAGAGCGCAAACGAAGAATGCgtcttgaaattgaaaatgattcacATAAAAGAACAAAAATCAAACAAGAACTTTACTGCCCATACTGCGGCGAATCCTTCAGGGGACGAACAGCCCTCAAGCAGCACAAGGCTAAAGTTCACCCGGACATGAAACCAAACAAAGGGCCATTTATTTGTGAAATCTGTGGCAAATCGTACGCCACGGTAGCATCCATGGTCGTCCACCGGGGAAGTCATGTCGAATATCAGCGCTTCAAATGCGATGAGTGTCCGAAGGCATTCACCTACCGATGTTATTTGGAGAATCACAAACGAGCTGAACATTTGCACGAGCGGCTGATTTGTCCTCTTTGCGGAAAACAGTTCAAATACAGCCAGGACCTGAAGGTGCACACCAAACAGCACGAGGATGACAAACCATTTAAGTGTGACCTTTGTCCATCGGTGTTCCGTTATCCCAGTGCGCTGCGTTGTCATAAAGCGCTCCACGTGGAAACTATTTTCACGTGCGACATCTGTCAGAAAGAGTTCAAATACGCGAACAGCTTACGAGTCCACAAGCGGCTGCACACCGGCGTCAAGCGCTTCCGGTGCGAAATTTGTGATCGGGAGTTCCATACGAAGGCGCCGCTGGTACGGCACTTAGCGACTCATTCGGTGGAACGCGAAATGAAGTGCGTCGTCTGCGATAAGATCTTctataaaaaaatcgaattggtAATCCATCAGACGAAGGAACATCCAAACAATCCTGTCATAGGAAAAACTATTAAGATTCATGTCTGTCCGGTATGTGGTCAAGAGTTTACCAAGAAAAGTAATCTGAAGTCTCACTCGTACATTCATGGCGATGTATACAAGTACAAGTGCGATCTCTGCGAGGATCAGAAATTTAAACAACATGCCGGGCTACGCCATCATTTGACGCATTTTCATAAACTTGAAATTAGGAAGCGGCAACCGAAGGATGAAGGTAAGGAGGGTCAAACAAACGAGGAAGTTGGCTCTACAATTAACGCTACGCTGGCACCAGCGGTTAGCGTTTTACACAACGGTGTTGAATTCATGGTGCAGCGGATTGAGTGCGAATAG
- Protein Sequence
- MPRRRAAASNLLAKQLGHTENFQESKQTEGEDGPALKQSIKGRGRGRPRHPRPDVLVPAEETRMPDSSRSLDSRDATDDEYRPTGSASGEETDLKERKKVTRHKDGSKSNVTCEICGKFFKFRATLKQHEQIHYGIKEFECHVCHTRFLHKGTLKVHLRLHTGEMPYKCPHCPKRFRGQTALDCHVFRHTKQGTKCPQCSSIFATPSIVKQHIREVHTTERSHTCQICGVTYKHRKSLRLHLRNHQKRICPDCGKVFHSIYAMMTHRKIHAQDHFQFKCTYCDRKFEKDEELQSHNKLRWRAYQCEMCCHSFNKAEYLTNHNRRNHWKEMGLEQLKVAPPKNGWNRKGVPKPKKVEGQKIHSSAEITESMVYDRPPETQQAIYNSMENNQSMSVPMMQSMESFGTESYHTEIAEPGVLERSSTITTITTEIRPISPKYPADIKSCDEFPGNDGIVETLEEQESDFEYECAANDDVGVAEESDSDQSLIGRIKVEESTLPEASEPTPLKVEFPDQDDLEQPSVIEATVTKVEVLEDFQKKEPVSDSEDEVPLVNFLPKGRTSRHVSQPLSKTSNKSTKRKTRKADGLSSNGESLPIKREPIDGTDDNLNSTEKEGKERKRRMRLEIENDSHKRTKIKQELYCPYCGESFRGRTALKQHKAKVHPDMKPNKGPFICEICGKSYATVASMVVHRGSHVEYQRFKCDECPKAFTYRCYLENHKRAEHLHERLICPLCGKQFKYSQDLKVHTKQHEDDKPFKCDLCPSVFRYPSALRCHKALHVETIFTCDICQKEFKYANSLRVHKRLHTGVKRFRCEICDREFHTKAPLVRHLATHSVEREMKCVVCDKIFYKKIELVIHQTKEHPNNPVIGKTIKIHVCPVCGQEFTKKSNLKSHSYIHGDVYKYKCDLCEDQKFKQHAGLRHHLTHFHKLEIRKRQPKDEGKEGQTNEEVGSTINATLAPAVSVLHNGVEFMVQRIECE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -