Basic Information

Insect: Topomyia yanbarensis
Gene Symbol: -
Assembly: GCA_030247195.1
Location: CM058069.1:431645719-431647248[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.00025 0.026 17.0 2.5 2 20 70 88 70 91 0.94

2 14 0.014 1.4 11.5 3.7 1 23 97 120 97 120 0.96

3 14 0.0026 0.27 13.8 0.2 2 23 134 155 133 155 0.96

4 14 9.9e-05 0.01 18.3 0.5 1 23 165 187 165 187 0.97

5 14 4.1e-06 0.00042 22.6 1.0 1 23 193 215 193 215 0.98

6 14 0.0018 0.18 14.3 1.1 1 23 221 243 221 243 0.98

7 14 0.0043 0.44 13.1 0.2 3 23 251 271 249 271 0.95

8 14 1.3e-06 0.00013 24.2 2.4 1 23 291 313 291 313 0.97

9 14 1.7e-05 0.0017 20.7 3.4 1 23 319 341 319 341 0.98

10 14 2.5e-05 0.0025 20.2 3.2 1 23 347 369 347 369 0.97

11 14 0.0011 0.11 15.0 4.8 1 23 375 397 375 397 0.99

12 14 0.00018 0.018 17.5 2.7 1 23 403 425 403 425 0.98

13 14 0.00037 0.038 16.5 1.8 1 23 431 453 431 453 0.99

14 14 5e-06 0.00051 22.3 1.3 1 23 462 484 462 484 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.00025	0.026	17.0	2.5	2	20	70	88	70	91	0.94
2	14	0.014	1.4	11.5	3.7	1	23	97	120	97	120	0.96
3	14	0.0026	0.27	13.8	0.2	2	23	134	155	133	155	0.96
4	14	9.9e-05	0.01	18.3	0.5	1	23	165	187	165	187	0.97
5	14	4.1e-06	0.00042	22.6	1.0	1	23	193	215	193	215	0.98
6	14	0.0018	0.18	14.3	1.1	1	23	221	243	221	243	0.98
7	14	0.0043	0.44	13.1	0.2	3	23	251	271	249	271	0.95
8	14	1.3e-06	0.00013	24.2	2.4	1	23	291	313	291	313	0.97
9	14	1.7e-05	0.0017	20.7	3.4	1	23	319	341	319	341	0.98
10	14	2.5e-05	0.0025	20.2	3.2	1	23	347	369	347	369	0.97
11	14	0.0011	0.11	15.0	4.8	1	23	375	397	375	397	0.99
12	14	0.00018	0.018	17.5	2.7	1	23	403	425	403	425	0.98
13	14	0.00037	0.038	16.5	1.8	1	23	431	453	431	453	0.99
14	14	5e-06	0.00051	22.3	1.3	1	23	462	484	462	484	0.97

Sequence Information

Coding Sequence: ATGGAGAGGCAGGGCTCACTTCCCTACGACAATGGCTCATTCTTAGATGATACTATCAACCAGGAAATTAGTAAGGATTCCCCAGCCGAAAGCTTCACCCAGATAAAGTTGGAAGAAATTGAAATAATCGATGGAGGGCTAGAAATCAAACCCGAGAAGTCGAAGGAGAGTATAGAAGCAAGTGTAAAGCAGACCATTCCGAATAACACATGTAATGTATGCGGTCATAGTTTTAGCTCAACACACAACCTCAAGGAGCACATGCCCCTGCACGACGAAAAAAGACCATTCAAATGTGATGTTTGTGGCTCGAGATTTTCCAAAGAAAGTCATATTTTGGTACACCATAAGTTAAGGCATAAAGATATCCCTCTTCCTGAGCTAAATTGTCGTTCCCTGAAATGTGATGTTTGCGGCAAACAGCTAGGAAGTGCTCGCAGTCTCAGAAATCACAAACTTATTCACGTTGAGAATCGAGTGGATTCATATGCCCACATATGCGATATTTGTGGCAAGAAATTCCCGATTCTTGCTAAGCTTGAACGCCACAGAAAGATCCACATGAAAACAAATTCTCACAAATGTAAAACCTGCGGAGCTGGTTTCAATGACTGGGCCAACCTCATGAAACACAAGCGCATCCATGCCGTTGAAAAACAGTATATGTGTAATATTTGCAAAATAGCATTTTTCGGACCTTGCGATTTGTCAGCTCACATGCATGTGCACACCAAAGAAGGAATGATTTGCTGTGATATTTGCGGGGAAGGATTTGCCTTACAACCGGAGCTGACGACGCATAAATCCATACATATCAGGAAGTGtgggaaatgttatgggcagtGTAGTTGCATCAGAGCCGATTTCGATCACCCGTGCGAGATTTGTGGGAAAAGATTTCGTTTACCCAAACACCTCATTGATCACATGCGTCGTCATACGAATGAAGACATTCACAAATGTGAGGTGTGTGGAAAAAAGTTCCGCTTCACTAATTACCTCACAATACACATGCTAACTCATACTGATGAGAAGCCACACGTATGTGATGTTTGTGGAAAAGAGTTCTACAGACGTTGCAATTTGCTGGTGCATAGACGAATCCACGAAACTGAAAAACAATATAAATGTGAGGTATGCGGAACAGGATTTCACAAACGCTGCAACCTCGAGCAACACAAGAAAGTTCATACGGGTGAGAAACCACACAAATGTGAAGTATGTGTAAAACAATTTCGTTCACGCAAAAATTTAGCGCAACATTCACGAGTTCACACAGGCGAAAAGCCTTTCAAGTGTGAAGTGTGTGGTCGAGGATTTCGTGTACATCAAGTCCTTAAGCAGCATAGGTTGACTCACACGCGGTACATAAACGAGAAAGCTCACGTTTGTGATGTGTGTGGAAGAGGATTCAGTCGGCGCACCAGGCTCACAAAACACATGTTGATTCACAAGGGAGATAAATCGTCCGAAAATGTGGACCTAATATCGCTACAGGCATTAGCACATCAACGAGAGgagcaaaaatga
Protein Sequence: MERQGSLPYDNGSFLDDTINQEISKDSPAESFTQIKLEEIEIIDGGLEIKPEKSKESIEASVKQTIPNNTCNVCGHSFSSTHNLKEHMPLHDEKRPFKCDVCGSRFSKESHILVHHKLRHKDIPLPELNCRSLKCDVCGKQLGSARSLRNHKLIHVENRVDSYAHICDICGKKFPILAKLERHRKIHMKTNSHKCKTCGAGFNDWANLMKHKRIHAVEKQYMCNICKIAFFGPCDLSAHMHVHTKEGMICCDICGEGFALQPELTTHKSIHIRKCGKCYGQCSCIRADFDHPCEICGKRFRLPKHLIDHMRRHTNEDIHKCEVCGKKFRFTNYLTIHMLTHTDEKPHVCDVCGKEFYRRCNLLVHRRIHETEKQYKCEVCGTGFHKRCNLEQHKKVHTGEKPHKCEVCVKQFRSRKNLAQHSRVHTGEKPFKCEVCGRGFRVHQVLKQHRLTHTRYINEKAHVCDVCGRGFSRRTRLTKHMLIHKGDKSSENVDLISLQALAHQREEQK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -