Tyan013685.1
Basic Information
- Insect
- Topomyia yanbarensis
- Gene Symbol
- -
- Assembly
- GCA_030247195.1
- Location
- CM058068.1:201360703-201361746[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 6e-05 0.0061 19.0 4.8 1 23 10 32 10 32 0.98 2 12 0.00026 0.027 16.9 1.3 1 23 38 60 38 60 0.98 3 12 8.2e-06 0.00084 21.7 1.0 1 23 66 88 66 88 0.99 4 12 1.6e-06 0.00017 23.9 0.6 1 23 94 116 94 116 0.98 5 12 0.00078 0.079 15.5 0.7 1 23 122 144 122 144 0.97 6 12 0.0004 0.041 16.4 4.1 1 20 150 169 150 172 0.95 7 12 3.9e-05 0.0039 19.6 7.5 1 21 178 198 178 200 0.95 8 12 2.9e-06 0.0003 23.1 0.7 1 21 206 226 206 228 0.96 9 12 0.0013 0.13 14.8 0.2 3 23 238 258 236 258 0.95 10 12 0.0038 0.39 13.3 0.5 1 23 264 287 264 287 0.96 11 12 1.2e-05 0.0012 21.2 3.3 1 23 292 314 292 314 0.98 12 12 2.2e-06 0.00023 23.5 2.2 2 23 321 343 320 343 0.94
Sequence Information
- Coding Sequence
- ATGCGAACCCACACCGAAAAAACTTCCCACCGGTGCGACATTTGTGGAAAAAGCTTTGTGAGGACACACGTATACGTGAGACATAGAAGAACGCATACCGGCGAACGACCGTTTTCCTGCGAAATATGTGGTAAAGGTTTCACATGCCAACCCTATCTGGACACGCATATGAGACTGCACACTGAAAATCACGCATACAAGTGCGATGTTTGTGGCAAAGGATACAGTTCAAGGACTATGTTTATGACCCACGTGAGATCCCATACAGGCGAGCGTCCGTACAAATGTGACATATGTGGGAAAAGTTTTGCTAGTAAGTTGTACCTGAGTAAGCATACGATAATACACGCAGAAAATCACAAGTTCAACTGTGATGTTTGTGGCAAAGGATGTGGTACAAGAGCCAAGCTTACGATTCACGAGCAATCCCACGGCATCGAGCGCTCCCACAAATGTGACATTTGCGGCAAGGGATTTTTCTCTAGCAAACAGTTAAATCAGCATCTCGAATGTCATAACGACGAACGTCTGCATCGATGTAATATTTGCGACAAAGAGTTCAGAAATAATCATCACCTCATCGCACACATGCGTTGCCACACTGGGGAACGGCCGTACGAATGTGACATTTGTGGTGCTTCGTTCAGCTTTTCTAGTAGCCTCATAGCTCACATGCGCTGCCACTTAAACCTAGCATCAAAACCTTTCGGATGTGATGTATGCGGAGCAAAATTTAGTcttcaaaaaaatctcaccaCGCACAGTGAGGTTCATCGGCGGACCCCGTTCCATGAATGTCCAAATTGTGACCAACAATTTCTCACCGCCGGAAAGCTGGAGAGGCATCGGGTAACCATTCACCAGTATCGACCGCACAAATGTACGATCTGTGACAAAGCCTGTGCCACCATGTCGAACTTGCGGGATCATCAGAAAGTTCACACCGACGTGATTCGACTCAAATGTCACGTCTGCGAGCGGAGCTTTTCAAGGAAATCAAGTCTTCAAGCACATGTAAAAGCAAAACACGCTTGGGACGAATGA
- Protein Sequence
- MRTHTEKTSHRCDICGKSFVRTHVYVRHRRTHTGERPFSCEICGKGFTCQPYLDTHMRLHTENHAYKCDVCGKGYSSRTMFMTHVRSHTGERPYKCDICGKSFASKLYLSKHTIIHAENHKFNCDVCGKGCGTRAKLTIHEQSHGIERSHKCDICGKGFFSSKQLNQHLECHNDERLHRCNICDKEFRNNHHLIAHMRCHTGERPYECDICGASFSFSSSLIAHMRCHLNLASKPFGCDVCGAKFSLQKNLTTHSEVHRRTPFHECPNCDQQFLTAGKLERHRVTIHQYRPHKCTICDKACATMSNLRDHQKVHTDVIRLKCHVCERSFSRKSSLQAHVKAKHAWDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -