Tyan002517.1
Basic Information
- Insect
- Topomyia yanbarensis
- Gene Symbol
- ZBTB41_1
- Assembly
- GCA_030247195.1
- Location
- CM058068.1:44725566-44728342[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00024 0.024 17.1 0.1 2 21 76 95 76 96 0.94 2 13 0.0029 0.3 13.7 0.5 2 23 152 174 151 174 0.95 3 13 0.012 1.2 11.8 0.4 1 23 180 202 180 202 0.97 4 13 0.00021 0.022 17.2 3.7 1 21 208 228 208 229 0.95 5 13 5.3e-06 0.00054 22.3 0.2 2 23 241 262 240 262 0.96 6 13 9.7e-08 9.8e-06 27.7 0.4 1 23 272 294 272 294 0.99 7 13 1.6e-05 0.0017 20.7 0.6 1 23 300 322 300 322 0.98 8 13 5.1e-05 0.0052 19.2 0.4 1 23 328 350 328 350 0.99 9 13 4.9e-05 0.005 19.2 2.3 1 23 356 378 356 378 0.97 10 13 0.0047 0.48 13.0 0.5 1 23 384 407 384 407 0.97 11 13 1.4e-05 0.0014 20.9 0.2 2 23 414 435 413 435 0.96 12 13 2.9e-05 0.003 19.9 2.3 1 23 441 463 441 463 0.98 13 13 8.5e-05 0.0086 18.5 3.0 2 23 470 492 469 492 0.96
Sequence Information
- Coding Sequence
- ATGCCCAAGTCACCCAAACAACCTAAGCTGCCCAAGCCAGTTAGTTCGAAAGGCAGTAAATTCCGGCTCACTGGTTCCGTCGAACATGAACACGAGTTggaactcgtcgccgtcgatgACAATACGCAGGATACCGACGTCATGGGTATTTCGGAGGAGAACGCTGAACCGAATCTGGTGCAGACCAGGGACGGACGATTAATTATAGAAATGAAAGTTAATCGGACCTGCAACGTCTGCAATAAGACGTTTGCTTCGGCGAAGATGCTTGCAAAACATCAACTTATTTGTACCGATAAGTTGGAAGAGTTTAGAAATGTTTTGGAGAAGGAAAAAGTGGCGGCAATGGTTGCTCAACCGGGTGAAGAGTTTTTCAAGTACTGCAATCCTAATCCGGATAACCCATGCTACTGCTGCGGGGAAGATATATCTACAGCACATGTTGGTCATATTAAGTGCAAATTTTGTCCGAAGTCGTTTAAAGCTTACGAGTACATGGAAAAACACTTAGCTTCAGTTCACGCAGAACATGAGAATTTTGCTTGTCCTCAATGCAATGCCATGTGCGCATCGCGGAAGGTGTTAGAGGATCATTTAATGACTCATAGCGAAGGAAAGCCGTTTTCATGTTTGAAGTGTGGTAAGGATTTTACCCGCAAGTACCACCTCGATCGCCACTTGAATCACTCAAGCTGTGGTGAGATTCCGAAGCAGACACTGCCCTGCGAGGTGTGCGGTAGAGAATTCACCAGGCTGGACAATCTGCGGGAGCATCTTCGCTTCCACATGGGACAAGGATCCCGCAAACGTGACTACCAATGCCCGTACTGTCCCAAGTCGTTCTATGGATCATCGTTGTTGAATATTCACATTCGTACTCATACCGGTGAGAAGCCCTTCCCTTGTGATCTGTGCTCAAAGTCATTTCCGTCAACTGGAGCTTTACGGAAGCATCGCAGATCACACACCGGCGAACGTCCGTATCGTTGCGACGAGTGTCCAGCAACGTTTGCGGCACGAGAAACCTTGAACAGACATCGTAAAACGCATACCGGTGAGAAACCCCATCAGTGTACAGTTTGCAGTAAACGATTCATCCAGGCAACGCAGCTTCGTGCTCACATGTTCAATCACACCGGAGAAAACGGTTTCAAGTGCGATCAATGCGGAAGCGAATTCAATCGAAAGGCCCGGTTGGACGAACACGTACGCTACGTTCACAACAAGGAGAAACAGTTGGAATGTGAAATTTGTAGTAAGGAGTTTGTGCGAAAGGAAGATCTCAATCGTCATTTGGACTCACATAAATCGATTAGAAACTTCAGTTGTCAGCAGTGTGAGAAAACTTTCGTGACCAAAACTGCTATGAAACTTCACCAGAGGACACACATTGTTGAAGAACCATCAGTTTGTtctatttgcaataaaaaattcattCGACAGGATTGTGTGGCTAGACACATGAGGAAAAAGCATCGAATGATTGATTCTCAATCGTCGGAAAATGCGAACTACATCATTCCCGATGAATCAACTCTTATGGAAGTCGATGATGGCCAACCACAAATCGAGAAAGATCCCCAAGTTTTAGAAATTGGTGGTGAAGTTTATCAGATTACACCcgttgaaaatgttcaaatcgTTAAAATGAGTTCTAAGCTTACCAACGTGAAATATGAGCCAAACAGAGAAATCGAGATAGTAGACGTAGTCAAAATCACTAAATCACCTCAATTGGAATCCGAACCAGCTACCCTGCCCGTTAAAAAGAAGGAGGACAGCAAGCCTGAGATAAAACGAAAACGCCCTGTGAAAGTTGCTAAATCTGAAGAATTGCTACTGCTTCCACTTTCAGAGGAATCAGTCAAACCGGAACCTATTGTTTCTAACAGAAAATCTGGCAAGGATCATAAAAAGAATAAACGAGCTTCTAATACAGATTGTCAAGACCTTCTGGTTCCACTTTCAGAAGAACCAATCACACCAGAACCTGTTGTGGCTAGCAAAAAAGAACGAAAGAAGACCAAACGAGCCTCCGATCAGTTTGATTTCAAGTCCACCAAAATTAAGATAGAAGACCAGGATGATACCGTTCCAATCTTTCTCAGCGATGCAGTGTTGAAGGATAAGATCTCCGAGCTGCTCTGTCTACTGATCGAAGAGGACACGTTGGTCGAAATCGGTTGGCCAACGGCCCCGGTCGAGGATGTGCTGAGTAGCGTGATCCGGCGCTGTGGGCATAAGCCAGCCCGCAATGAGGAAGCCGGCGATTCTACCACCCGAATGCGAGAGAACACCAAGATCCTATTCGCGCTGACCATGGACGACGCCAATATCAAATCGTTGCTCAACAACCACACCGTCGACGAGGTGATTATGAATGTGCTTAAAAATAAGTGA
- Protein Sequence
- MPKSPKQPKLPKPVSSKGSKFRLTGSVEHEHELELVAVDDNTQDTDVMGISEENAEPNLVQTRDGRLIIEMKVNRTCNVCNKTFASAKMLAKHQLICTDKLEEFRNVLEKEKVAAMVAQPGEEFFKYCNPNPDNPCYCCGEDISTAHVGHIKCKFCPKSFKAYEYMEKHLASVHAEHENFACPQCNAMCASRKVLEDHLMTHSEGKPFSCLKCGKDFTRKYHLDRHLNHSSCGEIPKQTLPCEVCGREFTRLDNLREHLRFHMGQGSRKRDYQCPYCPKSFYGSSLLNIHIRTHTGEKPFPCDLCSKSFPSTGALRKHRRSHTGERPYRCDECPATFAARETLNRHRKTHTGEKPHQCTVCSKRFIQATQLRAHMFNHTGENGFKCDQCGSEFNRKARLDEHVRYVHNKEKQLECEICSKEFVRKEDLNRHLDSHKSIRNFSCQQCEKTFVTKTAMKLHQRTHIVEEPSVCSICNKKFIRQDCVARHMRKKHRMIDSQSSENANYIIPDESTLMEVDDGQPQIEKDPQVLEIGGEVYQITPVENVQIVKMSSKLTNVKYEPNREIEIVDVVKITKSPQLESEPATLPVKKKEDSKPEIKRKRPVKVAKSEELLLLPLSEESVKPEPIVSNRKSGKDHKKNKRASNTDCQDLLVPLSEEPITPEPVVASKKERKKTKRASDQFDFKSTKIKIEDQDDTVPIFLSDAVLKDKISELLCLLIEEDTLVEIGWPTAPVEDVLSSVIRRCGHKPARNEEAGDSTTRMRENTKILFALTMDDANIKSLLNNHTVDEVIMNVLKNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -