Basic Information

Insect: Topomyia yanbarensis
Gene Symbol: -
Assembly: GCA_030247195.1
Location: CM058069.1:369219357-369221518[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 2.2e-05 0.0023 20.3 0.8 3 23 146 166 145 166 0.98

2 15 0.35 35 7.1 0.1 2 23 204 226 204 226 0.94

3 15 0.0021 0.21 14.1 1.9 1 23 232 254 232 254 0.96

4 15 9.8e-06 0.001 21.4 3.0 1 23 260 283 260 283 0.96

5 15 0.0038 0.38 13.3 3.5 1 23 288 310 288 310 0.97

6 15 1.5e-05 0.0015 20.9 7.1 1 23 316 338 316 338 0.99

7 15 8.9e-05 0.0091 18.4 1.2 1 23 344 366 344 366 0.95

8 15 2.1e-05 0.0022 20.4 1.2 1 23 372 394 372 394 0.97

9 15 2.3e-06 0.00024 23.4 0.4 1 23 400 422 400 422 0.98

10 15 0.021 2.1 10.9 1.2 2 23 429 451 428 451 0.91

11 15 2.8e-06 0.00029 23.1 0.9 1 23 488 510 488 510 0.98

12 15 1.6e-05 0.0017 20.7 0.3 1 23 516 539 516 539 0.95

13 15 8.7e-06 0.00088 21.6 1.7 1 23 545 567 545 567 0.99

14 15 5.6e-06 0.00057 22.2 0.9 1 23 573 595 573 595 0.98

15 15 1.7 1.7e+02 5.0 1.4 1 23 601 623 601 623 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	2.2e-05	0.0023	20.3	0.8	3	23	146	166	145	166	0.98
2	15	0.35	35	7.1	0.1	2	23	204	226	204	226	0.94
3	15	0.0021	0.21	14.1	1.9	1	23	232	254	232	254	0.96
4	15	9.8e-06	0.001	21.4	3.0	1	23	260	283	260	283	0.96
5	15	0.0038	0.38	13.3	3.5	1	23	288	310	288	310	0.97
6	15	1.5e-05	0.0015	20.9	7.1	1	23	316	338	316	338	0.99
7	15	8.9e-05	0.0091	18.4	1.2	1	23	344	366	344	366	0.95
8	15	2.1e-05	0.0022	20.4	1.2	1	23	372	394	372	394	0.97
9	15	2.3e-06	0.00024	23.4	0.4	1	23	400	422	400	422	0.98
10	15	0.021	2.1	10.9	1.2	2	23	429	451	428	451	0.91
11	15	2.8e-06	0.00029	23.1	0.9	1	23	488	510	488	510	0.98
12	15	1.6e-05	0.0017	20.7	0.3	1	23	516	539	516	539	0.95
13	15	8.7e-06	0.00088	21.6	1.7	1	23	545	567	545	567	0.99
14	15	5.6e-06	0.00057	22.2	0.9	1	23	573	595	573	595	0.98
15	15	1.7	1.7e+02	5.0	1.4	1	23	601	623	601	623	0.93

Sequence Information

Coding Sequence: ATGAAAACCAAAGAGCAACCGGACACGATCAGTTTGGATCAGTTGTCCCTCGCCTTTACTTGTCGGACCTGCTTGAATACGGATTCGCGACAACTGTTGATTCCGATATTCGAGGATCACAAAGCCAGTGGCAAATCGCCGTACGACCTCTTTGATCAGCTGCTTTTCCTGAAACTAAAGATATCTGAAAACGATGGCTTTCCTGCTAATATTTGTAGCAACTGCATGGAGCGACTTGCCACAGTGAACGCTTTCAGGACCCAGTGTGAAAAAGCCCAGGAGTTTTTAGATCGCTATTTTGCCGTGCTCCCCCAAGAGCAGTTGGCTGACTGTAAGAAGGATCCCGACGAAGAATACACAGAGTTAGAATATTTAACTGAGCCAAACAACGATGAAGTTCAATTGAAGACAGAAGCATCGAGCGATGAACTGCTGTGTCCTGTGTGCAATAAGGCTTACAAGAGGAAGGTCCACCTGGAGCGACATGTGGAAAGTCACAATCAGAAGCAATTGGAAACTACTCATTCACTGAGCGTGTCTCTGACTAATAGCGTTGGCGGCTGTCCAGAAGATGTTAGTTCAGAATCTCTAATGCTCACAAAAAAGGCTGAATGTCGTTTCTGTGGTGATACATTTGCATCCAATGAAGTTTTGGCAGCACACACTAAAGAATCTCATCCGAAGGATCGTCCATTTTCTTGTCCAATATGTAAAAAGGCCTTCCAAAGTATATCAAACCGTAACAATCATTTGCACTTACACAATCAGGATAATCCTTTCAAATGTGCTCATTGTGGACAGACATTCAAGAGTAAGGTTTATTTGAACAGGCACAGAAAAGCAATTCACACGATAGGCAGTCATAGCTGTAATCAATGTGGTGCAACTTTTACCAACACAACCAAATATGAGTACCATTTGAAGTCGCACGACCctaacaaaaaatacaaatgtACTTACTGTACAAAATCATTTATCCAGCAGCACCATCTGTTAAACCATGAGAGAACTCACACCGGAAAGCGCCCTTTCTTATGCAACGTTTGTGGTAAAGGATTTAAGCATGAGCCAAGTTTCAAAGTTCATCTCAAAATCCACGAAGGCATTCGAACGCACGTTTGTTCAATCTGTTCCAAAGCTTTTGTCCAGCGAAGCAGCTACATTCAGCATATGGCTAAACATAAAAACATTCGAACGTTTCAGTGTGAACAATGTGGAAAGAGTTTTATCCAGCGTAACTCGTTGCTGGCGCATTTGAAAGGACATTCCGTTGACCGATTGCAGCGATGCGAGCCTTGCAACACAACGTTCAGTTCATCCAAGCAACTTACGGATCACAATTTAAAGTTACATAGCGAACGGCTCATGGGTCAGGAAGAATTCGGCGATTCATTGAAGACGGAACCAGAAAAACCTGATGTTAAGGAGAAGAACCCTACTTCATTCTACAAACTGATGCCGTACGCATGTAAACTGTGTAGTAAATCTTTCCGATTACCTTCTTCGCTTACAACGCACATGAAAATACACAACGAGGAACGAAAGTATGTTTGTGAAGAGTGTGGCAGTACCTTCAAGAGGGCTGAACATCTGCGAGTTCACGTAAATGGAATTCACTTGAAACGCAAACCATATAGCTGTGAGGTTTGCCATAAATCTTTTGCACAATCTGGTGACAGAAATGTCCATATGAGACGACACACGAATGAAAAACCCCATCAATGTACATACTGCGGCAAGGCTTTTAGATTAGCTAAAGCCCTTAGGGCTCATGTTCGGTTACACACCGGAGAGAAGCCGTTTTTGTGCGTCATTTGTAGTATGACTTTTATTTCCTATACTGCACTTGCCTgTCACACTCAAAAGCATCAGGAAGAAGGACAGAGTCGCCCGTTGATGATAGAAACCAGTGCAACTGATCCGGCGCTTGCTACAAGGGCCTTGATTCCTGAAACGCGAAGTAAAGTATTCGGGGACTAA
Protein Sequence: MKTKEQPDTISLDQLSLAFTCRTCLNTDSRQLLIPIFEDHKASGKSPYDLFDQLLFLKLKISENDGFPANICSNCMERLATVNAFRTQCEKAQEFLDRYFAVLPQEQLADCKKDPDEEYTELEYLTEPNNDEVQLKTEASSDELLCPVCNKAYKRKVHLERHVESHNQKQLETTHSLSVSLTNSVGGCPEDVSSESLMLTKKAECRFCGDTFASNEVLAAHTKESHPKDRPFSCPICKKAFQSISNRNNHLHLHNQDNPFKCAHCGQTFKSKVYLNRHRKAIHTIGSHSCNQCGATFTNTTKYEYHLKSHDPNKKYKCTYCTKSFIQQHHLLNHERTHTGKRPFLCNVCGKGFKHEPSFKVHLKIHEGIRTHVCSICSKAFVQRSSYIQHMAKHKNIRTFQCEQCGKSFIQRNSLLAHLKGHSVDRLQRCEPCNTTFSSSKQLTDHNLKLHSERLMGQEEFGDSLKTEPEKPDVKEKNPTSFYKLMPYACKLCSKSFRLPSSLTTHMKIHNEERKYVCEECGSTFKRAEHLRVHVNGIHLKRKPYSCEVCHKSFAQSGDRNVHMRRHTNEKPHQCTYCGKAFRLAKALRAHVRLHTGEKPFLCVICSMTFISYTALACHTQKHQEEGQSRPLMIETSATDPALATRALIPETRSKVFGD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -