Basic Information

Insect: Topomyia yanbarensis
Gene Symbol: -
Assembly: GCA_030247195.1
Location: CM058070.1:55342386-55343879[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.027 2.7 10.6 1.0 2 23 52 73 51 73 0.91

2 15 4.7e-05 0.0048 19.3 1.3 1 23 90 112 90 112 0.98

3 15 1.1e-05 0.0011 21.3 1.8 1 23 117 139 117 139 0.98

4 15 1.3e-05 0.0013 21.1 2.9 2 23 146 167 145 167 0.97

5 15 2.4e-06 0.00024 23.4 0.3 1 23 173 195 173 195 0.99

6 15 0.0023 0.24 13.9 0.0 1 20 201 220 201 222 0.94

7 15 0.13 14 8.4 1.7 2 23 245 266 245 266 0.97

8 15 2.7e-06 0.00028 23.2 1.8 1 23 271 293 271 293 0.96

9 15 0.0027 0.27 13.8 2.0 1 23 299 322 299 322 0.97

10 15 6.4e-05 0.0065 18.9 0.2 1 23 328 350 328 350 0.96

11 15 3.7e-05 0.0037 19.6 0.4 1 23 356 378 356 378 0.97

12 15 8e-06 0.00082 21.7 1.6 1 23 384 406 384 406 0.97

13 15 2.1e-05 0.0021 20.4 2.2 1 23 412 434 412 434 0.98

14 15 3.5e-05 0.0036 19.7 2.9 1 23 440 462 440 462 0.97

15 15 0.00076 0.077 15.5 5.9 1 23 468 491 468 491 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.027	2.7	10.6	1.0	2	23	52	73	51	73	0.91
2	15	4.7e-05	0.0048	19.3	1.3	1	23	90	112	90	112	0.98
3	15	1.1e-05	0.0011	21.3	1.8	1	23	117	139	117	139	0.98
4	15	1.3e-05	0.0013	21.1	2.9	2	23	146	167	145	167	0.97
5	15	2.4e-06	0.00024	23.4	0.3	1	23	173	195	173	195	0.99
6	15	0.0023	0.24	13.9	0.0	1	20	201	220	201	222	0.94
7	15	0.13	14	8.4	1.7	2	23	245	266	245	266	0.97
8	15	2.7e-06	0.00028	23.2	1.8	1	23	271	293	271	293	0.96
9	15	0.0027	0.27	13.8	2.0	1	23	299	322	299	322	0.97
10	15	6.4e-05	0.0065	18.9	0.2	1	23	328	350	328	350	0.96
11	15	3.7e-05	0.0037	19.6	0.4	1	23	356	378	356	378	0.97
12	15	8e-06	0.00082	21.7	1.6	1	23	384	406	384	406	0.97
13	15	2.1e-05	0.0021	20.4	2.2	1	23	412	434	412	434	0.98
14	15	3.5e-05	0.0036	19.7	2.9	1	23	440	462	440	462	0.97
15	15	0.00076	0.077	15.5	5.9	1	23	468	491	468	491	0.96

Sequence Information

Coding Sequence: ATGGAGCAGCAAAATTCAATATCTAATGAGGAGAACAAGCCAGGAGAACCCATCGAATTCAACGCCTCTATTCAGATAAAAGAAGAAATCGAGATAAGAGATTCACTGCCTAAAGTAGAATCCGGACAGGAGATAACAGAGGCCGGTAATACCCGATGTGAGATTTGTGACAAAGAATTCCCATCTATCTCGTTGCTCAACTGTCATCGATTGGATCACACGAAAGATATAAAAGCTGGTTTGTGTAGCTACGGAAATAAAAATTCTTACATTTGTGATATATGTGGAAAAGATTTTCGTAAGCTCTTTCGGCTCACACAGCATATGCAATATCACATGGAAAAAATTCACAAATGTGACGAGTGTGAGAAAGCATTTGCAAGAATTAGTGATCTTAATACTCATAAGAAAACTCACTTGAAAGAGAAGTCATGTAAATGTGAACTGTGTGGGAAGGCATTTATCACTCTTAGCTATCTCAATACGCATAAAAAAACCCACTCAACCAATAAACCATACAAATGTACGTTGTGTGAAATGGCATTTCGTATGCCCGCTCTGTTGAAAAGGCATATGCGTGTTCACGGGACTAAGAAGCGATTCAATTGTGAGGTCTGCGGGAAAGGATTTGCTACGACCTGGAGTCTCGCGACCCACAAGGGGATTAATAAGAATGAGAACGAAATTTCTCCCTGCAGCAAATATATATCTCGCAGGCAGTACAGTACACCAGTATGTGAAATATGTGGAAAAGACTGTCTTACGATTAAAAGGCTAAAAGATCATATGAAATCTCATAAAGAAAGAACACACATATGTGATGTGTGTGGAAAATCATTTAAGAGAACCAGTGATCTCAATGATCATAAGAAAATTCACTCGACGGAAAAATCATATATATGTGAATTGTGTGAAAAGGGGTTTCACACGGAGAAGCTGCTGAAAACTCACAAGCAGCGTGTTCACTCAGAAGAGAAACGCTTCAAGTGTGGAGTGTGTGGAAAAGGCTTTCGAATGAGTGGTTCATTGAGAGTGCATGCGTTTGTGCACACCGATCTAAGAAATTACAATTGTGAGGTATGTGGTAAGGAATTCAAACTCCTCGATACCTTAGAACGCCACAGGACTGTTCACACAAACGAAAGACCGCATTCATGTGAAGTTTGCGGTAAAGAATTTCGCCTTAAAGATTCGCTCAAAAATCATATGTATATTCACACAAACGAAAAACCGCACAAGTGTGAAGTGTGCGGTAAACAATTTCGCCAAAAGGTTATCCTAAAAAAACATATGAATGTTCACACAAATCTAAAACCGCACAAATGTGACGTGTGCGAAAAGGAATTTCCGGATAAGTATAACTTCAAAACTCATATGTATTTGCACACGAACGAAAAGCCTCATGAATGTGAAGTGTGTGGTCAAAAATTTCGCCATCGCCATTCCGTCTTCCGTCACATGTCAGTTCAGCACCTGAACATGAAGAGGCAGTGA
Protein Sequence: MEQQNSISNEENKPGEPIEFNASIQIKEEIEIRDSLPKVESGQEITEAGNTRCEICDKEFPSISLLNCHRLDHTKDIKAGLCSYGNKNSYICDICGKDFRKLFRLTQHMQYHMEKIHKCDECEKAFARISDLNTHKKTHLKEKSCKCELCGKAFITLSYLNTHKKTHSTNKPYKCTLCEMAFRMPALLKRHMRVHGTKKRFNCEVCGKGFATTWSLATHKGINKNENEISPCSKYISRRQYSTPVCEICGKDCLTIKRLKDHMKSHKERTHICDVCGKSFKRTSDLNDHKKIHSTEKSYICELCEKGFHTEKLLKTHKQRVHSEEKRFKCGVCGKGFRMSGSLRVHAFVHTDLRNYNCEVCGKEFKLLDTLERHRTVHTNERPHSCEVCGKEFRLKDSLKNHMYIHTNEKPHKCEVCGKQFRQKVILKKHMNVHTNLKPHKCDVCEKEFPDKYNFKTHMYLHTNEKPHECEVCGQKFRHRHSVFRHMSVQHLNMKRQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -